Rh3CG368400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015348
Physical Location & Seq
Reverse (-)
46731043 .. 46734892
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG368400.1

Sequence Viewer

Length: 1023 bp
ATGCTTCATTTCACTTCCAAATTCTCACTTGCCTTTTGTCTCTCCCTACTTACATCTCTCATATCTACAGGAGTCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTTACCCTATATAATTCCACCCGTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCGATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCTGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATAGAAGATATCGGCGGTGCTGCAGTGTTATTTTTACCCTGTGCTGTATACAATTGGACACCACCAGAGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAATCATGGAACTTCTTCAGTGCATCTTCTGACATTTCAGATATGTTGTGTCTGATATTGAAGAGTGGGAGAACGAAGTACGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.37

Weight (kDa)

9.11

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 851
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 379
AccIII TCCGGA 1 cut(s) 564
AciI CCGC 1 cut(s) 801
AclWI GGATC 3 cut(s) 717, 749, 919
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 4 cut(s) 20, 541, 589, 764
AcuI CTGAAG 1 cut(s) 934
AfaI GTAC 4 cut(s) 616, 660, 683, 1013
AfiI CCNNNNNNNGG 4 cut(s) 365, 726, 727, 854
AgsI TTSAA 5 cut(s) 330, 365, 398, 907, 994
AjnI CCWGG 2 cut(s) 270, 725
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 4 cut(s) 80, 500, 692, 782
AluI AGCT 4 cut(s) 80, 500, 692, 782
Alw26I GTCTC 2 cut(s) 44, 375
AlwI GGATC 3 cut(s) 717, 749, 919
AlwNI CAGNNNCTG 1 cut(s) 320
Aor13HI TCCGGA 1 cut(s) 564
AoxI GGCC 2 cut(s) 240, 717
ApeKI GCWGC 1 cut(s) 806
ApoI RAATTY 4 cut(s) 20, 541, 589, 764
Asp700I GAANNNNTTC 1 cut(s) 947
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 4 cut(s) 133, 340, 380, 475
BalI TGGCCA 1 cut(s) 242
BbvI GCAGC 1 cut(s) 793
BccI CCATC 2 cut(s) 430, 754
BciT130I CCWGG 2 cut(s) 272, 727
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 44, 375
BfaI CTAG 2 cut(s) 425, 515
BfmI CTRYAG 2 cut(s) 66, 807
BfoI RGCGCY 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
BmcAI AGTACT 1 cut(s) 660
Bme1390I CCNGG 3 cut(s) 272, 286, 727
BmgT120I GGNCC 1 cut(s) 718
BmrFI CCNGG 3 cut(s) 272, 286, 727
BmsI GCATC 4 cut(s) 326, 381, 690, 965
BpuMI CCSGG 1 cut(s) 286
BsaJI CCNNGG 4 cut(s) 284, 457, 726, 882
BsaWI WCCGGW 1 cut(s) 564
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 726, 727, 854
Bse3DI GCAATG 3 cut(s) 214, 285, 414
BseAI TCCGGA 1 cut(s) 564
BseBI CCWGG 2 cut(s) 272, 727
BseDI CCNNGG 4 cut(s) 284, 457, 726, 882
BseGI GGATG 4 cut(s) 267, 441, 705, 892
BseLI CCNNNNNNNGG 4 cut(s) 365, 726, 727, 854
BseMI GCAATG 3 cut(s) 214, 285, 414
BseMII CTCAG 2 cut(s) 464, 504
BseRI GAGGAG 2 cut(s) 91, 455
BseXI GCAGC 1 cut(s) 793
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 102, 879
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 242, 719
BsiSI CCGG 2 cut(s) 286, 565
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 4 cut(s) 365, 726, 727, 854
BsmAI GTCTC 2 cut(s) 44, 375
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 2 cut(s) 242, 719
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 6 cut(s) 178, 322, 511, 709, 754, 911
Bsp68I TCGCGA 1 cut(s) 379
BspACI CCGC 1 cut(s) 801
BspANI GGCC 2 cut(s) 242, 719
BspCNI CTCAG 2 cut(s) 463, 503
BspEI TCCGGA 1 cut(s) 564
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 529
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 3 cut(s) 717, 749, 919
BsrDI GCAATG 3 cut(s) 214, 285, 414
BssECI CCNNGG 4 cut(s) 284, 457, 726, 882
BssMI GATC 6 cut(s) 178, 322, 511, 709, 754, 911
BssNAI GTATAC 1 cut(s) 835
BssT1I CCWWGG 2 cut(s) 457, 882
Bst1107I GTATAC 1 cut(s) 835
Bst2UI CCWGG 2 cut(s) 272, 727
Bst4CI ACNGT 2 cut(s) 145, 202
Bst6I CTCTTC 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 625, 878
BstDEI CTNAG 2 cut(s) 450, 490
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 4 cut(s) 267, 441, 705, 892
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 6 cut(s) 181, 325, 514, 712, 757, 914
BstMAI GTCTC 2 cut(s) 44, 375
BstMBI GATC 6 cut(s) 178, 322, 511, 709, 754, 911
BstNI CCWGG 2 cut(s) 272, 727
BstNSI RCATGY 1 cut(s) 880
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 270, 284, 725
BstSFI CTRYAG 2 cut(s) 66, 807
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 793
BstZ17I GTATAC 1 cut(s) 835
BsuRI GGCC 2 cut(s) 242, 719
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 4 cut(s) 267, 441, 705, 892
BtsI GCAGTG 2 cut(s) 108, 816
BtsIMutI CAGTG 3 cut(s) 108, 816, 958
BtuMI TCGCGA 1 cut(s) 379
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 2 cut(s) 625, 878
CaiI CAGNNNCTG 1 cut(s) 320
CciI TCATGA 1 cut(s) 529
CfoI GCGC 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 718
Csp6I GTAC 4 cut(s) 615, 659, 682, 1012
CviAII CATG 5 cut(s) 530, 685, 872, 877, 939
CviJI RGCY 7 cut(s) 80, 242, 500, 692, 719, 776, 782
CviKI_1 RGCY 7 cut(s) 80, 242, 500, 692, 719, 776, 782
CviQI GTAC 4 cut(s) 615, 659, 682, 1012
DdeI CTNAG 2 cut(s) 450, 490
DpnI GATC 6 cut(s) 180, 324, 513, 711, 756, 913
DpnII GATC 6 cut(s) 178, 322, 511, 709, 754, 911
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Eco130I CCWWGG 2 cut(s) 457, 882
Eco32I GATATC 1 cut(s) 796
Eco57I CTGAAG 1 cut(s) 934
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 270, 725
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 2 cut(s) 457, 882
ErhI CCWWGG 2 cut(s) 457, 882
FaeI CATG 5 cut(s) 533, 688, 875, 880, 942
FaqI GGGAC 1 cut(s) 156
FatI CATG 5 cut(s) 529, 684, 871, 876, 938
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 4 cut(s) 254, 448, 712, 899
Fsp4HI GCNGC 1 cut(s) 807
FspBI CTAG 2 cut(s) 425, 515
GlaI GCGC 1 cut(s) 555
GluI GCNGC 1 cut(s) 807
GsaI CCCAGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 2 cut(s) 242, 719
HapII CCGG 2 cut(s) 286, 565
HhaI GCGC 1 cut(s) 556
Hin1II CATG 5 cut(s) 533, 688, 875, 880, 942
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 690, 780
HinfI GANTC 4 cut(s) 72, 402, 488, 935
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 286, 565
HphI GGTGA 4 cut(s) 133, 340, 380, 475
Hpy166II GTNNAC 3 cut(s) 262, 670, 835
Hpy188I TCNGA 7 cut(s) 322, 453, 493, 588, 964, 973, 987
Hpy188III TCNNGA 5 cut(s) 173, 378, 530, 565, 594
Hpy8I GTNNAC 3 cut(s) 262, 670, 835
HpyAV CCTTC 2 cut(s) 430, 571
HpyCH4III ACNGT 2 cut(s) 145, 202
HpyCH4V TGCA 5 cut(s) 119, 334, 809, 860, 956
HpyF3I CTNAG 2 cut(s) 450, 490
Hsp92II CATG 5 cut(s) 533, 688, 875, 880, 942
HspAI GCGC 1 cut(s) 554
Kpn2I TCCGGA 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 178
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 6 cut(s) 178, 322, 511, 709, 754, 911
LmnI GCTCC 1 cut(s) 288
Lsp1109I GCAGC 1 cut(s) 793
LweI GCATC 4 cut(s) 326, 381, 690, 965
MaeI CTAG 2 cut(s) 425, 515
MaeIII GTNAC 4 cut(s) 139, 196, 346, 738
MalI GATC 6 cut(s) 180, 324, 513, 711, 756, 913
MboI GATC 6 cut(s) 178, 322, 511, 709, 754, 911
MboII GAAGA 5 cut(s) 472, 803, 940, 951, 1006
MfeI CAATTG 1 cut(s) 838
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 9 cut(s) 20, 160, 224, 360, 541, 589, 764, 838, 866
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 2 cut(s) 81, 482
MnlI CCTC 6 cut(s) 112, 225, 433, 436, 594, 847
Mox20I TGGCCA 1 cut(s) 242
MroI TCCGGA 1 cut(s) 564
MroXI GAANNNNTTC 1 cut(s) 947
MscI TGGCCA 1 cut(s) 242
MseI TTAA 6 cut(s) 84, 261, 305, 632, 891, 1021
MslI CAYNNNNRTG 2 cut(s) 272, 339
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 2 cut(s) 286, 565
MspR9I CCNGG 3 cut(s) 272, 286, 727
MunI CAATTG 1 cut(s) 838
MvaI CCWGG 2 cut(s) 272, 727
MvnI CGCG 1 cut(s) 379
NciI CCSGG 1 cut(s) 286
NdeII GATC 6 cut(s) 178, 322, 511, 709, 754, 911
NlaIII CATG 5 cut(s) 533, 688, 875, 880, 942
NmuCI GTSAC 3 cut(s) 139, 346, 738
NruI TCGCGA 1 cut(s) 379
NspI RCATGY 1 cut(s) 880
PaeI GCATGC 1 cut(s) 880
PagI TCATGA 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 947
PfeI GAWTC 2 cut(s) 402, 935
PkrI GCNGC 1 cut(s) 808
PleI GAGTC 2 cut(s) 80, 482
PpsI GAGTC 2 cut(s) 80, 482
Psp6I CCWGG 2 cut(s) 270, 725
PspEI GGTNACC 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 270, 725
PspPI GGNCC 1 cut(s) 718
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 320
RruI TCGCGA 1 cut(s) 379
RsaI GTAC 4 cut(s) 616, 660, 683, 1013
RsaNI GTAC 4 cut(s) 615, 659, 682, 1012
RseI CAYNNNNRTG 2 cut(s) 272, 339
SaqAI TTAA 6 cut(s) 84, 261, 305, 632, 891, 1021
SatI GCNGC 1 cut(s) 807
Sau3AI GATC 6 cut(s) 178, 322, 511, 709, 754, 911
Sau96I GGNCC 1 cut(s) 718
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 2 cut(s) 81, 482
ScrFI CCNGG 3 cut(s) 272, 286, 727
SfaNI GCATC 4 cut(s) 326, 381, 690, 965
SfcI CTRYAG 2 cut(s) 66, 807
SmiMI CAYNNNNRTG 2 cut(s) 272, 339
SphI GCATGC 1 cut(s) 880
Sse9I AATT 9 cut(s) 20, 160, 224, 360, 541, 589, 764, 838, 866
SsiI CCGC 1 cut(s) 801
SspI AATATT 2 cut(s) 253, 374
SspMI CTAG 2 cut(s) 425, 515
StyD4I CCNGG 3 cut(s) 270, 284, 725
StyI CCWWGG 2 cut(s) 457, 882
TaaI ACNGT 2 cut(s) 145, 202
TaqI TCGA 1 cut(s) 933
TasI AATT 9 cut(s) 20, 160, 224, 360, 541, 589, 764, 838, 866
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 2 cut(s) 402, 935
Tru1I TTAA 6 cut(s) 84, 261, 305, 632, 891, 1021
Tru9I TTAA 6 cut(s) 84, 261, 305, 632, 891, 1021
TscAI CASTG 3 cut(s) 115, 816, 958
TseFI GTSAC 3 cut(s) 139, 346, 738
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 3 cut(s) 139, 346, 738
TspDTI ATGAA 8 cut(s) 256, 458, 518, 536, 701, 775, 860, 890
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 3 cut(s) 115, 816, 958
XapI RAATTY 4 cut(s) 20, 541, 589, 764
XceI RCATGY 1 cut(s) 880
XmiI GTMKAC 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 947
XspI CTAG 2 cut(s) 425, 515
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.