Rh3BG371700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015348
Physical Location & Seq
Reverse (-)
46951531 .. 46954649
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG371700.1

Sequence Viewer

Length: 1167 bp
ATGAGGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAACAAAGCAAATTCAAATTCAAATTCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTCACCCTATATAATTCCACTCGTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCAATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCCGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCCGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATTGAAGATATCGGCGGTGCTGCAGTGTTATTTTTACCCTGTGATGTATACAATTGGACACCACCAGAGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAATCATGGAACTTCTTCAGTGCATCTTCTGACATTTCAGATATGTTGTGTCTGATATTGAAGAGTGGGAGAACAAAGTACGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.11

Weight (kDa)

9.61

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 169, 995
AccI GTMKAC 1 cut(s) 978
AccII CGCG 1 cut(s) 523
AccIII TCCGGA 1 cut(s) 708
AciI CCGC 1 cut(s) 945
AclWI GGATC 3 cut(s) 861, 893, 1063
AcoI YGGCCR 2 cut(s) 169, 384
AcsI RAATTY 6 cut(s) 125, 131, 137, 685, 733, 908
AcuI CTGAAG 1 cut(s) 1078
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 4 cut(s) 760, 804, 827, 1157
AfiI CCNNNNNNNGG 5 cut(s) 167, 509, 870, 871, 998
AgsI TTSAA 9 cut(s) 130, 136, 142, 474, 509, 542, 935, 1051, 1138
AhdI GACNNNNNGTC 1 cut(s) 186
AjnI CCWGG 2 cut(s) 414, 869
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 3 cut(s) 218, 836, 926
AluI AGCT 3 cut(s) 218, 836, 926
Alw26I GTCTC 2 cut(s) 194, 519
AlwI GGATC 3 cut(s) 861, 893, 1063
AlwNI CAGNNNCTG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 708
AoxI GGCC 3 cut(s) 169, 384, 861
ApeKI GCWGC 2 cut(s) 164, 950
ApoI RAATTY 6 cut(s) 125, 131, 137, 685, 733, 908
Asp700I GAANNNNTTC 1 cut(s) 1091
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 3 cut(s) 6, 158, 862
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 5 cut(s) 277, 286, 484, 524, 619
AvaII GGWCC 2 cut(s) 6, 158
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 151, 937
BccI CCATC 3 cut(s) 12, 574, 898
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 2 cut(s) 416, 871
BclI TGATCA 2 cut(s) 79, 322
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 194, 519
BfaI CTAG 2 cut(s) 569, 659
BfmI CTRYAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 2 cut(s) 169, 995
BisI GCNGC 2 cut(s) 165, 951
BlsI GCNGC 2 cut(s) 166, 952
BmcAI AGTACT 1 cut(s) 804
Bme1390I CCNGG 3 cut(s) 416, 430, 871
Bme18I GGWCC 2 cut(s) 6, 158
BmeRI GACNNNNNGTC 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 6, 158, 862
BmrFI CCNGG 3 cut(s) 416, 430, 871
BmsI GCATC 4 cut(s) 470, 525, 834, 1109
BpiI GAAGAC 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 7 cut(s) 172, 205, 428, 601, 645, 870, 1026
BsaWI WCCGGW 2 cut(s) 549, 708
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 509, 870, 871, 998
Bse118I RCCGGY 1 cut(s) 167
Bse3DI GCAATG 4 cut(s) 358, 429, 442, 558
BseAI TCCGGA 1 cut(s) 708
BseBI CCWGG 2 cut(s) 416, 871
BseDI CCNNGG 7 cut(s) 172, 205, 428, 601, 645, 870, 1026
BseGI GGATG 6 cut(s) 23, 33, 411, 585, 849, 1036
BseLI CCNNNNNNNGG 5 cut(s) 167, 509, 870, 871, 998
BseMI GCAATG 4 cut(s) 358, 429, 442, 558
BseMII CTCAG 2 cut(s) 608, 648
BseRI GAGGAG 2 cut(s) 229, 599
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 2 cut(s) 151, 937
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 2 cut(s) 246, 1023
Bsh1236I CGCG 1 cut(s) 523
BshFI GGCC 3 cut(s) 171, 386, 863
BsiSI CCGG 4 cut(s) 168, 430, 550, 709
BslFI GGGAC 2 cut(s) 26, 300
BslI CCNNNNNNNGG 5 cut(s) 167, 509, 870, 871, 998
BsmAI GTCTC 2 cut(s) 194, 519
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 26, 300
BsnI GGCC 3 cut(s) 171, 386, 863
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 708
Bsp143I GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
Bsp68I TCGCGA 1 cut(s) 523
BspACI CCGC 1 cut(s) 945
BspANI GGCC 3 cut(s) 171, 386, 863
BspCNI CTCAG 2 cut(s) 607, 647
BspEI TCCGGA 1 cut(s) 708
BspFNI CGCG 1 cut(s) 523
BspHI TCATGA 1 cut(s) 673
BspMAI CTGCAG 1 cut(s) 955
BspMI ACCTGC 2 cut(s) 169, 995
BspPI GGATC 3 cut(s) 861, 893, 1063
BsrDI GCAATG 4 cut(s) 358, 429, 442, 558
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 7 cut(s) 172, 205, 428, 601, 645, 870, 1026
BssMI GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
BssNAI GTATAC 1 cut(s) 979
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 4 cut(s) 172, 205, 601, 1026
Bst1107I GTATAC 1 cut(s) 979
Bst2UI CCWGG 2 cut(s) 416, 871
Bst4CI ACNGT 2 cut(s) 289, 346
Bst6I CTCTTC 2 cut(s) 51, 1133
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 169, 769, 1022
BstDEI CTNAG 2 cut(s) 594, 634
BstDSI CCRYGG 1 cut(s) 645
BstEII GGTNACC 1 cut(s) 490
BstF5I GGATG 6 cut(s) 23, 33, 411, 585, 849, 1036
BstFNI CGCG 1 cut(s) 523
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 7 cut(s) 82, 325, 469, 658, 856, 901, 1058
BstMAI GTCTC 2 cut(s) 194, 519
BstMBI GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
BstNI CCWGG 2 cut(s) 416, 871
BstNSI RCATGY 1 cut(s) 1024
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 3 cut(s) 414, 428, 869
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 2 cut(s) 151, 937
BstV2I GAAGAC 1 cut(s) 283
BstZ17I GTATAC 1 cut(s) 979
BsuRI GGCC 3 cut(s) 171, 386, 863
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 6 cut(s) 23, 33, 411, 585, 849, 1036
BtsI GCAGTG 3 cut(s) 246, 252, 960
BtsIMutI CAGTG 4 cut(s) 246, 252, 960, 1102
BtuMI TCGCGA 1 cut(s) 523
BveI ACCTGC 2 cut(s) 169, 995
Cac8I GCNNGC 3 cut(s) 169, 769, 1022
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 700
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 6, 158, 862
CseI GACGC 1 cut(s) 11
Csp6I GTAC 4 cut(s) 759, 803, 826, 1156
CviAII CATG 5 cut(s) 674, 829, 1016, 1021, 1083
CviJI RGCY 9 cut(s) 171, 177, 218, 386, 644, 836, 863, 920, 926
CviKI_1 RGCY 9 cut(s) 171, 177, 218, 386, 644, 836, 863, 920, 926
CviQI GTAC 4 cut(s) 759, 803, 826, 1156
DdeI CTNAG 2 cut(s) 594, 634
DpnI GATC 7 cut(s) 81, 324, 468, 657, 855, 900, 1057
DpnII GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
DriI GACNNNNNGTC 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 169, 384
Eam1104I CTCTTC 2 cut(s) 51, 1133
Eam1105I GACNNNNNGTC 1 cut(s) 186
EarI CTCTTC 2 cut(s) 51, 1133
Eco130I CCWWGG 4 cut(s) 172, 205, 601, 1026
Eco32I GATATC 1 cut(s) 940
Eco47I GGWCC 2 cut(s) 6, 158
Eco57I CTGAAG 1 cut(s) 1078
Eco91I GGTNACC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 733
EcoRII CCWGG 2 cut(s) 414, 869
EcoRV GATATC 1 cut(s) 940
EcoT14I CCWWGG 4 cut(s) 172, 205, 601, 1026
ErhI CCWWGG 4 cut(s) 172, 205, 601, 1026
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 5 cut(s) 677, 832, 1019, 1024, 1086
FaqI GGGAC 2 cut(s) 26, 300
FatI CATG 5 cut(s) 673, 828, 1015, 1020, 1082
FbaI TGATCA 2 cut(s) 79, 322
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 2 cut(s) 165, 951
FokI GGATG 6 cut(s) 20, 30, 398, 592, 856, 1043
Fsp4HI GCNGC 2 cut(s) 165, 951
FspBI CTAG 2 cut(s) 569, 659
GlaI GCGC 1 cut(s) 699
GluI GCNGC 2 cut(s) 165, 951
GsaI CCCAGC 1 cut(s) 461
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 3 cut(s) 171, 386, 863
HapII CCGG 4 cut(s) 168, 430, 550, 709
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 700
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 5 cut(s) 677, 832, 1019, 1024, 1086
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 2 cut(s) 834, 924
HinfI GANTC 4 cut(s) 210, 546, 632, 1079
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 4 cut(s) 168, 430, 550, 709
HphI GGTGA 5 cut(s) 277, 286, 484, 524, 619
Hpy166II GTNNAC 3 cut(s) 406, 814, 979
Hpy188I TCNGA 8 cut(s) 158, 466, 597, 637, 732, 1108, 1117, 1131
Hpy188III TCNNGA 5 cut(s) 317, 522, 674, 709, 738
Hpy8I GTNNAC 3 cut(s) 406, 814, 979
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 574, 715
HpyCH4III ACNGT 2 cut(s) 289, 346
HpyCH4V TGCA 6 cut(s) 88, 263, 478, 953, 1004, 1100
HpyF3I CTNAG 2 cut(s) 594, 634
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 5 cut(s) 677, 832, 1019, 1024, 1086
HspAI GCGC 1 cut(s) 698
Kpn2I TCCGGA 1 cut(s) 708
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 2 cut(s) 79, 322
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 2 cut(s) 151, 937
LweI GCATC 4 cut(s) 470, 525, 834, 1109
MaeI CTAG 2 cut(s) 569, 659
MaeIII GTNAC 4 cut(s) 283, 340, 490, 882
MalI GATC 7 cut(s) 81, 324, 468, 657, 855, 900, 1057
MboI GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
MboII GAAGA 8 cut(s) 38, 61, 283, 616, 947, 1084, 1095, 1150
MfeI CAATTG 2 cut(s) 83, 982
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 386
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 9 cut(s) 41, 47, 54, 250, 369, 577, 580, 738, 991
Mox20I TGGCCA 1 cut(s) 386
MroI TCCGGA 1 cut(s) 708
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 1091
MscI TGGCCA 1 cut(s) 386
MseI TTAA 6 cut(s) 222, 405, 449, 776, 1035, 1165
MslI CAYNNNNRTG 2 cut(s) 416, 483
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 4 cut(s) 168, 430, 550, 709
MspR9I CCNGG 3 cut(s) 416, 430, 871
MunI CAATTG 2 cut(s) 83, 982
MvaI CCWGG 2 cut(s) 416, 871
MvnI CGCG 1 cut(s) 523
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 430
NdeII GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 5 cut(s) 677, 832, 1019, 1024, 1086
NmuCI GTSAC 3 cut(s) 283, 490, 882
NruI TCGCGA 1 cut(s) 523
NspI RCATGY 1 cut(s) 1024
PaeI GCATGC 1 cut(s) 1024
PagI TCATGA 1 cut(s) 673
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 3 cut(s) 210, 546, 1079
PkrI GCNGC 2 cut(s) 166, 952
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 414, 869
PspEI GGTNACC 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 2 cut(s) 414, 869
PspPI GGNCC 3 cut(s) 6, 158, 862
PstI CTGCAG 1 cut(s) 955
PstNI CAGNNNCTG 1 cut(s) 464
RruI TCGCGA 1 cut(s) 523
RsaI GTAC 4 cut(s) 760, 804, 827, 1157
RsaNI GTAC 4 cut(s) 759, 803, 826, 1156
RseI CAYNNNNRTG 2 cut(s) 416, 483
SaqAI TTAA 6 cut(s) 222, 405, 449, 776, 1035, 1165
SatI GCNGC 2 cut(s) 165, 951
Sau3AI GATC 7 cut(s) 79, 322, 466, 655, 853, 898, 1055
Sau96I GGNCC 3 cut(s) 6, 158, 862
ScaI AGTACT 1 cut(s) 804
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 3 cut(s) 416, 430, 871
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 4 cut(s) 470, 525, 834, 1109
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 2 cut(s) 6, 158
SmiMI CAYNNNNRTG 2 cut(s) 416, 483
SphI GCATGC 1 cut(s) 1024
SsiI CCGC 1 cut(s) 945
SspI AATATT 2 cut(s) 397, 518
SspMI CTAG 2 cut(s) 569, 659
StyD4I CCNGG 3 cut(s) 414, 428, 869
StyI CCWWGG 4 cut(s) 172, 205, 601, 1026
TaaI ACNGT 2 cut(s) 289, 346
TaqI TCGA 1 cut(s) 1077
TatI WGTACW 1 cut(s) 802
TfiI GAWTC 3 cut(s) 210, 546, 1079
Tru1I TTAA 6 cut(s) 222, 405, 449, 776, 1035, 1165
Tru9I TTAA 6 cut(s) 222, 405, 449, 776, 1035, 1165
TscAI CASTG 4 cut(s) 253, 259, 960, 1102
TseFI GTSAC 3 cut(s) 283, 490, 882
TseI GCWGC 2 cut(s) 164, 950
Tsp45I GTSAC 3 cut(s) 283, 490, 882
TspDTI ATGAA 8 cut(s) 400, 602, 662, 680, 845, 919, 1004, 1034
TspGWI ACGGA 2 cut(s) 64, 856
TspRI CASTG 4 cut(s) 253, 259, 960, 1102
VpaK11BI GGWCC 2 cut(s) 6, 158
XapI RAATTY 6 cut(s) 125, 131, 137, 685, 733, 908
XceI RCATGY 1 cut(s) 1024
XmiI GTMKAC 1 cut(s) 978
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 2 cut(s) 569, 659
ZrmI AGTACT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.