AT2G45480

growth-regulating factor 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012482
Physical Location & Seq
Forward (+)
18745249 .. 18747634
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45480.2

Sequence Viewer

Length: 1290 bp
ATGCAGAGCCCTAAAATGGAGCAGGAGGAGGTTGAGGAGGAGAGGATGAGGAATAAGTGGCCGTGGATGAAGGCGGCGCAGTTAATGGAGTTTCGGATGCAAGCTTTGGTGTATAGATACATAGAGGCTGGTCTCCGTGTGCCTCATCATCTCGTGGTGCCTATTTGGAACAGTCTTGCTCTCTCTTCTTCCTCCAATTACAACTATCACTCTTCTTCTCTGTTGAGTAACAAGGGAGTAACCCATATCGACACGTTGGAAACTGAACCAACTAGGTGCAGGAGAACAGATGGGAAGAAATGGCGCTGTAGCAACACGGTCCTTCTATTCGAGAAGTACTGTGAACGGCACATGCATAGAGGTCGTAAACGTTCAAGAAAGCTTGTGGAATCTTCTTCTGAGGTTGCTTCATCATCAACCAAATACGACAACACTTATGGTTTGGATAGGTATAACGAGAGTCAGAGTCATCTTCATGGGACAATCTCGGGTTCTAGTAATGCGCAGGTAGTTACCATTGCTTCACTGCCTAGTGCCAGATCCTGTGAAAATGTCATTCGTCCGTCTTTAGTGATCTCTGAATTCACAAACAAAAGTGTGAGTCACGGCAGAAAGAACATGGAGATGAGTTATGATGACTTTATTAATGAAAAAGAGGCGAGTATGTGTGTTGGAGTTGTTCCTCTTCAAGGTGATGAGAGCAAACCTTCGGTTCAAAAGTTCTTCCCTGAGGTATCTGATAAATGCTTAGAAGCTGCAAAATTCTCAAGCAACAGGAAGAATGATATAATTGCAAGAAGCAGAGAATGGAAGAATATGAATGTTAATGGTGGTTTGTTTCATGGTATCCACTTTTCTCCAGACACTGTTCTTCAAGAACGTGGTTGTTTTCGTTTACAAGGAGTTGAAACAGACAATGAACCAGGAAGGTGCCGAAGAACAGATGGGAAGAAGTGGAGATGCAGCAAAGATGTTTTGTCTGGTCAGAAGTACTGCGATAAGCACATGCATAGAGGTATGAAGAAGAAGCATCCAGTTGATACTACTAACTCACATGAGAATGCCGGGTTTAGCCCGTTAACCGTGGAAACAGCTGTTAGATCGGTTGTGCCTTGCAAAGATGGAGATGACCAGAAGCATTCTGTTTCAGTCATGGGAATTACACTGCCCCGAGTTTCTGATGAGAAGAGCACTAGCAGTTGCAGTACCGACACTACCATTACTGACACAGCTTTAAGGGGTGAAGACGACGATGAGGAGTACTTGTCTTTGTTTTCACCAGGTGTTTAG

Protein Analysis

429

Amino Acids

48.61

Weight (kDa)

8.35

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 25 - 58 5.9e-11 QLQ
WRC PF08879 91 - 132 5.2e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45480 AT2G45480 AT2G45480
fragaria_vesca FvH4_7g12130 FvH4_7g12130
malus_domestica MD02G1201000.v1.1
prunus_persica Prupe.2G148100_v2.0.a1
pyrus_communis pycom02g16430
rosa_chinensis RchiOBHm_Chr1g0350881
rosa_laevigata RLG00000028446
rosa_multiflora Rmu_sc0014584.1_g000012
rosa_roxburghii Rroxscaffold_4G00304440
rosa_rugosa Rorug01G0214900 Rorug01G0215000
rosa_samantha Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana Rw1G019870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 2 cut(s) 157, 930
AciI CCGC 1 cut(s) 74
AclI AACGTT 1 cut(s) 370
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 2 cut(s) 581, 761
AdeI CACNNNGTG 1 cut(s) 1283
AfaI GTAC 4 cut(s) 338, 992, 1207, 1262
AfiI CCNNNNNNNGG 2 cut(s) 16, 689
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 375, 689, 716, 875, 908
AjnI CCWGG 2 cut(s) 922, 1279
AluBI AGCT 5 cut(s) 104, 382, 755, 1094, 1232
AluI AGCT 5 cut(s) 104, 382, 755, 1094, 1232
Alw21I GWGCWC 1 cut(s) 1193
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 534
AlwNI CAGNNNCTG 2 cut(s) 543, 866
Ama87I CYCGRG 2 cut(s) 487, 1170
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 755, 963
ApoI RAATTY 2 cut(s) 581, 761
AseI ATTAAT 1 cut(s) 645
AspLEI GCGC 3 cut(s) 79, 306, 505
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 1066
AsuHPI GGTGA 3 cut(s) 704, 1253, 1269
AvaI CYCGRG 2 cut(s) 487, 1170
AvaII GGWCC 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 729
BanI GGYRCC 2 cut(s) 157, 930
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 1251
Bbv12I GWGCWC 1 cut(s) 1193
BbvI GCAGC 2 cut(s) 742, 975
BccI CCATC 3 cut(s) 284, 938, 1115
BceAI ACGGC 3 cut(s) 46, 362, 622
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 2 cut(s) 924, 1281
BciVI GTATCC 1 cut(s) 857
BcnI CCSGG 1 cut(s) 1066
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 4 cut(s) 273, 495, 531, 1194
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 857
BisI GCNGC 3 cut(s) 75, 756, 964
BlsI GCNGC 3 cut(s) 76, 757, 965
BmcAI AGTACT 3 cut(s) 338, 992, 1262
Bme1390I CCNGG 3 cut(s) 924, 1066, 1281
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 487, 1170
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 159, 932
BmrFI CCNGG 3 cut(s) 924, 1066, 1281
BmsI GCATC 3 cut(s) 87, 950, 1039
BpiI GAAGAC 1 cut(s) 1251
BpmI CTGGAG 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 1066
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 62, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 1250, 1280
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 689
Bse1I ACTGG 1 cut(s) 1034
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 516
BseBI CCWGG 2 cut(s) 924, 1281
BseDI CCNNGG 2 cut(s) 62, 1083
BseGI GGATG 4 cut(s) 51, 72, 102, 1030
BseLI CCNNNNNNNGG 2 cut(s) 16, 689
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 2 cut(s) 390, 720
BseNI ACTGG 1 cut(s) 1034
BseRI GAGGAG 4 cut(s) 41, 50, 53, 1271
BseXI GCAGC 2 cut(s) 742, 975
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 2 cut(s) 157, 930
BsiHKAI GWGCWC 1 cut(s) 1193
BsiHKCI CYCGRG 2 cut(s) 487, 1170
BsiSI CCGG 1 cut(s) 1065
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 16, 689
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 2 cut(s) 1066, 1138
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 2 cut(s) 487, 1170
Bsp1286I GDGCHC 2 cut(s) 11, 1193
Bsp143I GATC 3 cut(s) 539, 573, 1100
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 391, 721
BspLI GGNNCC 2 cut(s) 159, 932
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 534
BspQI GCTCTTC 1 cut(s) 1181
BspT107I GGYRCC 2 cut(s) 157, 930
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 1 cut(s) 1034
BssECI CCNNGG 2 cut(s) 62, 1083
BssMI GATC 3 cut(s) 539, 573, 1100
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 924, 1281
Bst4CI ACNGT 5 cut(s) 173, 319, 341, 868, 1084
Bst6I CTCTTC 4 cut(s) 190, 217, 690, 1181
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 399, 729, 748
BstDSI CCRYGG 2 cut(s) 62, 1083
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 51, 72, 102, 1030
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 3 cut(s) 79, 306, 505
BstKTI GATC 3 cut(s) 542, 576, 1103
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 539, 573, 1100
BstNI CCWGG 2 cut(s) 924, 1281
BstNSI RCATGY 2 cut(s) 355, 1009
BstSCI CCNGG 3 cut(s) 922, 1064, 1279
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 742, 975
BstV2I GAAGAC 1 cut(s) 1251
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
Bsu36I CCTNAGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 2 cut(s) 62, 1083
BtsCI GGATG 4 cut(s) 51, 72, 102, 1030
BtsI GCAGTG 2 cut(s) 524, 1163
BtsIMutI CAGTG 3 cut(s) 524, 864, 1163
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 2 cut(s) 543, 866
CfoI GCGC 3 cut(s) 79, 306, 505
Cfr13I GGNCC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 1279
Csp6I GTAC 4 cut(s) 337, 991, 1206, 1261
CviAII CATG 7 cut(s) 352, 476, 619, 842, 1006, 1055, 1153
CviJI RGCY 9 cut(s) 9, 61, 104, 128, 382, 755, 1074, 1094, 1232
CviKI_1 RGCY 9 cut(s) 9, 61, 104, 128, 382, 755, 1074, 1094, 1232
CviQI GTAC 4 cut(s) 337, 991, 1206, 1261
DdeI CTNAG 3 cut(s) 399, 729, 748
DpnI GATC 3 cut(s) 541, 575, 1102
DpnII GATC 3 cut(s) 539, 573, 1100
DraIII CACNNNGTG 1 cut(s) 1283
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 4 cut(s) 190, 217, 690, 1181
EarI CTCTTC 4 cut(s) 190, 217, 690, 1181
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 2 cut(s) 487, 1170
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 922, 1279
EcoT22I ATGCAT 2 cut(s) 357, 1011
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 7 cut(s) 355, 479, 622, 845, 1009, 1058, 1156
FaqI GGGAC 1 cut(s) 493
FatI CATG 7 cut(s) 351, 475, 618, 841, 1005, 1054, 1152
Fnu4HI GCNGC 3 cut(s) 75, 756, 964
FokI GGATG 4 cut(s) 58, 79, 109, 1017
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 75, 756, 964
FspBI CTAG 4 cut(s) 273, 495, 531, 1194
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 3 cut(s) 78, 305, 504
GluI GCNGC 3 cut(s) 75, 756, 964
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 1065
HhaI GCGC 3 cut(s) 79, 306, 505
Hin1II CATG 7 cut(s) 355, 479, 622, 845, 1009, 1058, 1156
Hin6I GCGC 3 cut(s) 77, 304, 503
HinP1I GCGC 3 cut(s) 77, 304, 503
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HindIII AAGCTT 2 cut(s) 102, 380
HinfI GANTC 4 cut(s) 389, 460, 466, 601
HpaI GTTAAC 1 cut(s) 1080
HpaII CCGG 1 cut(s) 1065
HphI GGTGA 3 cut(s) 704, 1253, 1269
Hpy166II GTNNAC 4 cut(s) 344, 368, 896, 1080
Hpy188I TCNGA 7 cut(s) 96, 400, 465, 580, 739, 987, 1180
Hpy188III TCNNGA 4 cut(s) 331, 375, 860, 875
Hpy8I GTNNAC 4 cut(s) 344, 368, 896, 1080
Hpy99I CGWCG 1 cut(s) 1253
HpyAV CCTTC 4 cut(s) 64, 332, 717, 921
HpyCH4III ACNGT 5 cut(s) 173, 319, 341, 868, 1084
HpyCH4IV ACGT 3 cut(s) 254, 370, 880
HpyF3I CTNAG 3 cut(s) 399, 729, 748
HpySE526I ACGT 3 cut(s) 254, 370, 880
Hsp92II CATG 7 cut(s) 355, 479, 622, 845, 1009, 1058, 1156
HspAI GCGC 3 cut(s) 77, 304, 503
KspAI GTTAAC 1 cut(s) 1080
Kzo9I GATC 3 cut(s) 539, 573, 1100
LguI GCTCTTC 1 cut(s) 1181
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 2 cut(s) 742, 975
LweI GCATC 3 cut(s) 87, 950, 1039
MabI ACCWGGT 1 cut(s) 1279
MaeI CTAG 4 cut(s) 273, 495, 531, 1194
MaeII ACGT 3 cut(s) 254, 370, 880
MaeIII GTNAC 4 cut(s) 227, 238, 511, 602
MalI GATC 3 cut(s) 541, 575, 1102
MboI GATC 3 cut(s) 539, 573, 1100
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 2 cut(s) 11, 1193
MluCI AATT 5 cut(s) 196, 581, 761, 789, 1158
MlyI GAGTC 3 cut(s) 469, 475, 610
MmeI TCCRAC 2 cut(s) 237, 652
Mph1103I ATGCAT 2 cut(s) 357, 1011
MseI TTAA 5 cut(s) 83, 645, 825, 1079, 1235
MslI CAYNNNNRTG 3 cut(s) 474, 623, 1059
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 1 cut(s) 1065
MspR9I CCNGG 3 cut(s) 924, 1066, 1281
Mva1269I GAATGC 2 cut(s) 1066, 1138
MvaI CCWGG 2 cut(s) 924, 1281
NciI CCSGG 1 cut(s) 1066
NdeII GATC 3 cut(s) 539, 573, 1100
NlaIII CATG 7 cut(s) 355, 479, 622, 845, 1009, 1058, 1156
NlaIV GGNNCC 2 cut(s) 159, 932
NmuCI GTSAC 1 cut(s) 602
NsbI TGCGCA 1 cut(s) 504
NsiI ATGCAT 2 cut(s) 357, 1011
NspI RCATGY 2 cut(s) 355, 1009
PciSI GCTCTTC 1 cut(s) 1181
PctI GAATGC 2 cut(s) 1066, 1138
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 3 cut(s) 76, 757, 965
PleI GAGTC 3 cut(s) 468, 474, 609
PpsI GAGTC 3 cut(s) 468, 474, 609
PshBI ATTAAT 1 cut(s) 645
Psp1406I AACGTT 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 922, 1279
PspGI CCWGG 2 cut(s) 922, 1279
PspN4I GGNNCC 2 cut(s) 159, 932
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 543, 866
PsuI RGATCY 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 4 cut(s) 338, 992, 1207, 1262
RsaNI GTAC 4 cut(s) 337, 991, 1206, 1261
RseI CAYNNNNRTG 3 cut(s) 474, 623, 1059
SapI GCTCTTC 1 cut(s) 1181
SaqAI TTAA 5 cut(s) 83, 645, 825, 1079, 1235
SatI GCNGC 3 cut(s) 75, 756, 964
Sau3AI GATC 3 cut(s) 539, 573, 1100
Sau96I GGNCC 1 cut(s) 319
ScaI AGTACT 3 cut(s) 338, 992, 1262
SchI GAGTC 3 cut(s) 469, 475, 610
ScrFI CCNGG 3 cut(s) 924, 1066, 1281
SduI GDGCHC 2 cut(s) 11, 1193
SexAI ACCWGGT 1 cut(s) 1279
SfaNI GCATC 3 cut(s) 87, 950, 1039
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 3 cut(s) 474, 623, 1059
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
Sse9I AATT 5 cut(s) 196, 581, 761, 789, 1158
SsiI CCGC 1 cut(s) 74
SspMI CTAG 4 cut(s) 273, 495, 531, 1194
StyD4I CCNGG 3 cut(s) 922, 1064, 1279
TaaI ACNGT 5 cut(s) 173, 319, 341, 868, 1084
TaiI ACGT 3 cut(s) 257, 373, 883
TaqI TCGA 2 cut(s) 249, 330
TasI AATT 5 cut(s) 196, 581, 761, 789, 1158
TatI WGTACW 3 cut(s) 336, 990, 1260
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 5 cut(s) 83, 645, 825, 1079, 1235
Tru9I TTAA 5 cut(s) 83, 645, 825, 1079, 1235
TscAI CASTG 3 cut(s) 531, 871, 1170
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 2 cut(s) 755, 963
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 8 cut(s) 83, 399, 464, 663, 830, 833, 933, 1034
TspGWI ACGGA 2 cut(s) 125, 552
TspRI CASTG 3 cut(s) 531, 871, 1170
VpaK11BI GGWCC 1 cut(s) 319
VspI ATTAAT 1 cut(s) 645
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 2 cut(s) 581, 761
XceI RCATGY 2 cut(s) 355, 1009
XspI CTAG 4 cut(s) 273, 495, 531, 1194
ZrmI AGTACT 3 cut(s) 338, 992, 1262
Zsp2I ATGCAT 2 cut(s) 357, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.