Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012482

Physical Location & Seq

Genomic Coordinates Forward (+)

43136010 .. 43138689

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGACGACACCCAAGTCGTGAAGGTCAAGCATGAGGATGATGAAGGATCGCCGCCGCCGTCGATCAAGCTCGGTCTTTCGATCGGCGGTGATGGTGGTGATTGTGAGGTAGTGGGGAAGAGAAGGAGGAGTGAGTTTACGGCGGCTCAGTTGGATGAGTTGGAGCATCAGAGGCTTGTTTATAAGTACATAGCTGCTGGGTTGCCTGCTCCTTTTCAGCTTGTGCTTCCCATTTGGAAGAGTGTGGCTGCCGGTTTTTCTAATGCTGCTTTCTACCAGCAATATCCCAGCTTTCTAGGATATGGGGGTTTCGACTACAGGAGTAAAATGGATACTGAGCCAGGAAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTGGTAGGGATGTAGTGCCTGATGAGAAGTACTGTGAGAAACACATGCACAGAGGGCGCCATCGTTCAAGAAAGCCTGTGGAAACTTCTCAAGTCACTTCTCCTCCCAGCACAAAGCTACTGAAGAATTCAGATGGCGAACTGTTGAATTCAAAGAAAAACCTTCAGATTCAAACCCCCAAAGGCCTTCAACTTATGGCGCAACCCTCCAATAATGGTAGTGTCAGCCACAGTCGAACCACCTTCTCTAGTGGCTATCATGAGTTACCGAAGAACATTAGTACAGTTGCACGCACTACCAGCACACCTTCATACAGAACCGCTATTACCCCTGCTGCTGTAGCCCCTTCCACCACTGCTGGACAAGTGATCGCAACCGCCAGCACTTGCAATGACAATAACATCTGGATCGGTGTGAAAGACTACGGTTGCAACCATGCTGGTAATTATGGCATTATCAGAGGAAGCAGAAACAACATCAATGTTGGCAGTAATATATCGTCCGGATCAGGCTTCTCCCCAAAAAGTGTTCTTCAGGCAGGACATATGAGTAAGATCGAACCTTTTTGCCATGCATATTTCTTTTCCCTAAATATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

326

Amino Acids

35.71

Weight (kDa)

9.34

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	46 - 79	7.8e-12	QLQ
WRC	PF08879	113 - 154	1.3e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45480 AT2G45480 AT2G45480
fragaria_vesca	FvH4_7g12130 FvH4_7g12130
malus_domestica	MD02G1201000.v1.1
prunus_persica	Prupe.2G148100_v2.0.a1
pyrus_communis	pycom02g16430
rosa_chinensis	RchiOBHm_Chr1g0350881
rosa_laevigata	RLG00000028446
rosa_multiflora	Rmu_sc0014584.1_g000012
rosa_roxburghii	Rroxscaffold_4G00304440
rosa_rugosa	Rorug01G0214900 Rorug01G0215000
rosa_samantha	Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana	Rw1G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	6 cut(s)	53, 56, 87, 143, 699, 756
AclWI	GGATC	3 cut(s)	55, 794, 892
AcsI	RAATTY	2 cut(s)	505, 526
AcuI	CTGAAG	3 cut(s)	521, 527, 896
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	3 cut(s)	188, 410, 661
AgsI	TTSAA	5 cut(s)	447, 526, 531, 551, 569
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	5 cut(s)	70, 194, 220, 291, 496
AluI	AGCT	5 cut(s)	70, 194, 220, 291, 496
AlwI	GGATC	3 cut(s)	55, 794, 892
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	4 cut(s)	194, 248, 266, 713
ApoI	RAATTY	2 cut(s)	505, 526
AspLEI	GCGC	2 cut(s)	438, 580
AsuHPI	GGTGA	2 cut(s)	101, 110
BanI	GGYRCC	1 cut(s)	435
BbvI	GCAGC	4 cut(s)	181, 235, 253, 700
BccI	CCATC	4 cut(s)	86, 356, 447, 506
BceAI	ACGGC	2 cut(s)	43, 156
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	296, 627
BfmI	CTRYAG	2 cut(s)	316, 717
BfoI	RGCGCY	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	7 cut(s)	53, 56, 144, 195, 249, 267, 714
BlsI	GCNGC	7 cut(s)	54, 57, 145, 196, 250, 268, 715
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	881
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 466, 496
Bse118I	RCCGGY	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	775
BseAI	TCCGGA	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	43, 160, 394
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	2 cut(s)	161, 327
BseRI	GAGGAG	2 cut(s)	142, 471
BseXI	GCAGC	4 cut(s)	181, 235, 253, 700
BseYI	CCCAGC	3 cut(s)	197, 287, 485
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	252, 882
BsnI	GGCC	1 cut(s)	564
Bsp13I	TCCGGA	1 cut(s)	881
Bsp143I	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
BspACI	CCGC	6 cut(s)	53, 56, 87, 143, 699, 756
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	160, 328
BspEI	TCCGGA	1 cut(s)	881
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	437
BspPI	GGATC	3 cut(s)	55, 794, 892
BspT107I	GGYRCC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
BssNI	GRCGYC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	5 cut(s)	413, 522, 611, 664, 806
Bst6I	CTCTTC	2 cut(s)	113, 233
BstACI	GRCGYC	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	207, 670, 760
BstDEI	CTNAG	2 cut(s)	147, 336
BstF5I	GGATG	3 cut(s)	43, 160, 394
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	438, 580
BstKTI	GATC	7 cut(s)	50, 66, 84, 750, 789, 887, 936
BstMBI	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 433, 678, 719
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	2 cut(s)	316, 717
BstV1I	GCAGC	4 cut(s)	181, 235, 253, 700
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	43, 160, 394
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	3 cut(s)	207, 670, 760
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	438, 580
Cfr10I	RCCGGY	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	187, 409, 660
CviAII	CATG	5 cut(s)	32, 424, 638, 815, 950
CviQI	GTAC	3 cut(s)	187, 409, 660
DdeI	CTNAG	2 cut(s)	147, 336
DinI	GGCGCC	1 cut(s)	437
DpnI	GATC	7 cut(s)	49, 65, 83, 749, 788, 886, 935
DpnII	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	113, 233
EarI	CTCTTC	2 cut(s)	113, 233
Eco147I	AGGCCT	1 cut(s)	564
Eco57I	CTGAAG	3 cut(s)	521, 527, 896
EcoRI	GAATTC	2 cut(s)	505, 526
EcoRII	CCWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	955
EgeI	GGCGCC	1 cut(s)	437
EheI	GGCGCC	1 cut(s)	437
FaeI	CATG	5 cut(s)	35, 427, 641, 818, 953
FatI	CATG	5 cut(s)	31, 423, 637, 814, 949
FauNDI	CATATG	1 cut(s)	924
Fnu4HI	GCNGC	7 cut(s)	53, 56, 144, 195, 249, 267, 714
FokI	GGATG	3 cut(s)	50, 167, 401
Fsp4HI	GCNGC	7 cut(s)	53, 56, 144, 195, 249, 267, 714
FspBI	CTAG	2 cut(s)	296, 627
GlaI	GCGC	2 cut(s)	437, 579
GluI	GCNGC	7 cut(s)	53, 56, 144, 195, 249, 267, 714
GsaI	CCCAGC	3 cut(s)	201, 291, 489
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	252, 882
HhaI	GCGC	2 cut(s)	438, 580
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	35, 427, 641, 818, 953
Hin6I	GCGC	2 cut(s)	436, 578
HinP1I	GCGC	2 cut(s)	436, 578
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	2 cut(s)	252, 882
HphI	GGTGA	2 cut(s)	101, 110
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	4 cut(s)	171, 511, 546, 839
Hpy188III	TCNNGA	5 cut(s)	19, 447, 638, 784, 882
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	9 cut(s)	16, 38, 117, 339, 551, 575, 631, 696, 735
HpyCH4III	ACNGT	5 cut(s)	413, 522, 611, 664, 806
HpyCH4V	TGCA	5 cut(s)	427, 668, 768, 810, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 433, 678, 719
HpyF3I	CTNAG	2 cut(s)	147, 336
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	5 cut(s)	35, 427, 641, 818, 953
HspAI	GCGC	2 cut(s)	436, 578
KasI	GGCGCC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	881
Kzo9I	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
LmnI	GCTCC	2 cut(s)	163, 214
Lsp1109I	GCAGC	4 cut(s)	181, 235, 253, 700
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	296, 627
MaeIII	GTNAC	2 cut(s)	472, 642
MalI	GATC	7 cut(s)	49, 65, 83, 749, 788, 886, 935
MboI	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
MboII	GAAGA	6 cut(s)	130, 250, 366, 514, 661, 902
MluCI	AATT	3 cut(s)	505, 526, 823
Mly113I	GGCGCC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	132, 141
MnlI	CCTC	9 cut(s)	28, 100, 120, 165, 369, 425, 492, 595, 833
Mph1103I	ATGCAT	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	881
MseI	TTAA	1 cut(s)	979
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	2 cut(s)	252, 882
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	172, 433, 678, 719
NarI	GGCGCC	1 cut(s)	436
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
NlaIII	CATG	5 cut(s)	35, 427, 641, 818, 953
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	7 cut(s)	54, 57, 145, 196, 250, 268, 715
Ple19I	CGATCG	1 cut(s)	84
PluTI	GGCGCC	1 cut(s)	439
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	3 cut(s)	197, 287, 485
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	437
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
PvuI	CGATCG	1 cut(s)	84
RsaI	GTAC	3 cut(s)	188, 410, 661
RsaNI	GTAC	3 cut(s)	187, 409, 660
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	979
SatI	GCNGC	7 cut(s)	53, 56, 144, 195, 249, 267, 714
Sau3AI	GATC	7 cut(s)	47, 63, 81, 747, 786, 884, 933
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	316, 717
SfoI	GGCGCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	505, 526, 823
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	6 cut(s)	53, 56, 87, 143, 699, 756
SspDI	GGCGCC	1 cut(s)	435
SspMI	CTAG	2 cut(s)	296, 627
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	5 cut(s)	413, 522, 611, 664, 806
TaqI	TCGA	5 cut(s)	62, 80, 312, 613, 936
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	505, 526, 823
TatI	WGTACW	3 cut(s)	186, 408, 659
TauI	GCSGC	3 cut(s)	55, 58, 146
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	979
Tru9I	TTAA	1 cut(s)	979
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	4 cut(s)	194, 248, 266, 713
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	57, 678
TspRI	CASTG	1 cut(s)	739
XapI	RAATTY	2 cut(s)	505, 526
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	2 cut(s)	296, 627
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.