Rh1CG214100

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012482
Physical Location & Seq
Forward (+)
46063572 .. 46066881
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG214100.1

Sequence Viewer

Length: 1008 bp
ATGGATACTGAGCCAGGAAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTAGTAGGGATGTAGTGCCTGATGAGAAGTACTGTGAGAAACACATGCACAGAGGGCGCCATCGTTCAAGAAAGCCTGTGGAAACTTCTCAAGTCACTTCTCCTCCCAGCACAAAGCTACTGAAGAATTCAGATGGCGAACTGTTGAATTCAAAGAAAAACCTTCAGATTCAAACCCCCAAAGGCCTTCAACTTATGGCGCAACCCTCCAATAATGGTAGTGTCAGCCACAGTCGAACCACCTTCTCTAGTGGCTATCATGAGTTACCTAAGAACATTAGTACAGTTGCACCCACTACCAGCACACCTTCATACAGAACCGCTATTACCCCTGCTGCTGTAGCCCCTTCCACCACTGCTGGACAAGTGATCGCAACCGCCAGCACTTGCAATGACCATAACATCTGGATCGGTGTGAAAGACTACGGTTGCAACTACCATGCTAGTAATTATGGCATTATCAGAGGAAGCAGAAACAACATCAATGTTGGCAGTAATATATCGTCCGGATCAGGCTTCTCCCCAAAAAGTGTTCTTCAGGCAGGACATATGATTCTTGTAAATTGCAATGGCTTATACTTTGACAACAGACATGGCGAAGAACTTGAACCAGGCAGGTGTAGGAGGACAGATGGAAAGAAGTGGCGGTGCAAAAGGGAAGTTCTTCCTGATCAGAAGTACTGTGACCGGCATATCCACAGAGGAGTAAAGCAAATGAGAACCTCTGGCCCTGTTACTGCTGCTTCTACCTCGGCCACTGCAATGAATTCTACTCGGCCCTCTCAGACCACAGGCATAGCTGGAGAAACTGATTGTGCATTCCCTAATACAAATCTCACCATGTCCATCCCAGCAAGATCACCACTGATGCAAAATGATGAAAAAAGTGATTCCACCAGCGACAGTGACGCAACCATTACAGACACCAGCCTTGCTGCTTATGAACAGCTGATTTAG

Protein Analysis

335

Amino Acids

36.65

Weight (kDa)

9.34

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 4 - 45 2e-21 WRC
WRC PF08879 220 - 258 2.6e-19 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45480 AT2G45480 AT2G45480
fragaria_vesca FvH4_7g12130 FvH4_7g12130
malus_domestica MD02G1201000.v1.1
prunus_persica Prupe.2G148100_v2.0.a1
pyrus_communis pycom02g16430
rosa_chinensis RchiOBHm_Chr1g0350881
rosa_laevigata RLG00000028446
rosa_multiflora Rmu_sc0014584.1_g000012
rosa_roxburghii Rroxscaffold_4G00304440
rosa_rugosa Rorug01G0214900 Rorug01G0215000
rosa_samantha Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana Rw1G019870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 557
AciI CCGC 3 cut(s) 372, 429, 697
AclWI GGATC 2 cut(s) 467, 568
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 3 cut(s) 178, 199, 817
AcuI CTGAAG 3 cut(s) 194, 200, 572
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 3 cut(s) 83, 334, 731
AgsI TTSAA 6 cut(s) 120, 199, 204, 224, 242, 659
AjnI CCWGG 2 cut(s) 13, 661
AluBI AGCT 3 cut(s) 169, 851, 1000
AluI AGCT 3 cut(s) 169, 851, 1000
AlwI GGATC 2 cut(s) 467, 568
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 4 cut(s) 235, 778, 804, 827
ApeKI GCWGC 3 cut(s) 386, 791, 986
ApoI RAATTY 3 cut(s) 178, 199, 817
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 2 cut(s) 111, 253
AspS9I GGNCC 2 cut(s) 779, 828
AsuHPI GGTGA 2 cut(s) 880, 903
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 373, 778, 973
BccI CCATC 5 cut(s) 29, 120, 179, 677, 905
BciT130I CCWGG 2 cut(s) 15, 663
BclI TGATCA 1 cut(s) 721
BfaI CTAG 2 cut(s) 300, 495
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 657
BisI GCNGC 3 cut(s) 387, 792, 987
BlsI GCNGC 3 cut(s) 388, 793, 988
BmcAI AGTACT 2 cut(s) 83, 731
Bme1390I CCNGG 2 cut(s) 15, 663
BmgT120I GGNCC 2 cut(s) 779, 828
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 15, 663
BmsI GCATC 1 cut(s) 909
BpmI CTGGAG 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 801
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 139, 169
Bse118I RCCGGY 1 cut(s) 738
Bse3DI GCAATG 3 cut(s) 448, 625, 819
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 2 cut(s) 15, 663
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 2 cut(s) 67, 897
BseMI GCAATG 3 cut(s) 448, 625, 819
BseMII CTCAG 1 cut(s) 848
BseRI GAGGAG 2 cut(s) 144, 768
BseXI GCAGC 3 cut(s) 373, 778, 973
BseYI CCCAGC 2 cut(s) 158, 901
BshFI GGCC 4 cut(s) 237, 780, 806, 829
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 558, 739
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 4 cut(s) 237, 780, 806, 829
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 5 cut(s) 420, 459, 560, 721, 908
BspACI CCGC 3 cut(s) 372, 429, 697
BspANI GGCC 4 cut(s) 237, 780, 806, 829
BspCNI CTCAG 1 cut(s) 847
BspEI TCCGGA 1 cut(s) 557
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 2 cut(s) 467, 568
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 3 cut(s) 448, 625, 819
BsrFI RCCGGY 1 cut(s) 738
BssAI RCCGGY 1 cut(s) 738
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 5 cut(s) 420, 459, 560, 721, 908
BssNI GRCGYC 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 15, 663
Bst4CI ACNGT 7 cut(s) 86, 195, 284, 337, 479, 734, 956
BstACI GRCGYC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 3 cut(s) 9, 321, 834
BstF5I GGATG 2 cut(s) 67, 897
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 2 cut(s) 111, 253
BstKTI GATC 5 cut(s) 423, 462, 563, 724, 911
BstMBI GATC 5 cut(s) 420, 459, 560, 721, 908
BstMWI GCNNNNNNNGC 2 cut(s) 106, 392
BstNI CCWGG 2 cut(s) 15, 663
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 13, 661
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 373, 778, 973
BsuRI GGCC 4 cut(s) 237, 780, 806, 829
BtsCI GGATG 2 cut(s) 67, 897
BtsI GCAGTG 2 cut(s) 405, 807
BtsIMutI CAGTG 4 cut(s) 405, 807, 914, 961
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 310
CfoI GCGC 2 cut(s) 111, 253
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 2 cut(s) 779, 828
CseI GACGC 1 cut(s) 968
Csp6I GTAC 3 cut(s) 82, 333, 730
CviAII CATG 5 cut(s) 97, 311, 491, 644, 892
CviQI GTAC 3 cut(s) 82, 333, 730
DdeI CTNAG 3 cut(s) 9, 321, 834
DinI GGCGCC 1 cut(s) 110
DpnI GATC 5 cut(s) 422, 461, 562, 723, 910
DpnII GATC 5 cut(s) 420, 459, 560, 721, 908
EaeI YGGCCR 1 cut(s) 804
Eco147I AGGCCT 1 cut(s) 237
Eco57I CTGAAG 3 cut(s) 194, 200, 572
EcoRI GAATTC 3 cut(s) 178, 199, 817
EcoRII CCWGG 2 cut(s) 13, 661
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
FaeI CATG 5 cut(s) 100, 314, 494, 647, 895
FatI CATG 5 cut(s) 96, 310, 490, 643, 891
FauNDI CATATG 1 cut(s) 600
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 387, 792, 987
FokI GGATG 2 cut(s) 74, 884
Fsp4HI GCNGC 3 cut(s) 387, 792, 987
FspBI CTAG 2 cut(s) 300, 495
GlaI GCGC 2 cut(s) 110, 252
GluI GCNGC 3 cut(s) 387, 792, 987
GsaI CCCAGC 2 cut(s) 162, 905
GsuI CTGGAG 1 cut(s) 873
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 4 cut(s) 237, 780, 806, 829
HapII CCGG 2 cut(s) 558, 739
HgaI GACGC 1 cut(s) 968
HhaI GCGC 2 cut(s) 111, 253
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 5 cut(s) 100, 314, 494, 647, 895
Hin6I GCGC 2 cut(s) 109, 251
HinP1I GCGC 2 cut(s) 109, 251
HinfI GANTC 3 cut(s) 220, 604, 941
HpaII CCGG 2 cut(s) 558, 739
HphI GGTGA 2 cut(s) 880, 903
Hpy188I TCNGA 5 cut(s) 184, 219, 515, 726, 837
Hpy188III TCNNGA 5 cut(s) 120, 311, 457, 558, 719
HpyAV CCTTC 6 cut(s) 12, 224, 248, 304, 369, 408
HpyCH4III ACNGT 7 cut(s) 86, 195, 284, 337, 479, 734, 956
HpyCH4V TGCA 9 cut(s) 100, 341, 441, 483, 618, 702, 812, 869, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 392
HpyF3I CTNAG 3 cut(s) 9, 321, 834
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 5 cut(s) 100, 314, 494, 647, 895
HspAI GCGC 2 cut(s) 109, 251
KasI GGCGCC 1 cut(s) 108
Kpn2I TCCGGA 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 5 cut(s) 420, 459, 560, 721, 908
Lsp1109I GCAGC 3 cut(s) 373, 778, 973
LweI GCATC 1 cut(s) 909
MaeI CTAG 2 cut(s) 300, 495
MaeIII GTNAC 5 cut(s) 145, 315, 734, 784, 956
MalI GATC 5 cut(s) 422, 461, 562, 723, 910
MboI GATC 5 cut(s) 420, 459, 560, 721, 908
MboII GAAGA 5 cut(s) 39, 187, 578, 662, 707
MluCI AATT 5 cut(s) 178, 199, 499, 613, 817
Mly113I GGCGCC 1 cut(s) 109
MroI TCCGGA 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 1000
MspI CCGG 2 cut(s) 558, 739
MspR9I CCNGG 2 cut(s) 15, 663
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 2 cut(s) 15, 663
MwoI GCNNNNNNNGC 2 cut(s) 106, 392
NarI GGCGCC 1 cut(s) 109
NdeI CATATG 1 cut(s) 600
NdeII GATC 5 cut(s) 420, 459, 560, 721, 908
NlaIII CATG 5 cut(s) 100, 314, 494, 647, 895
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 2 cut(s) 782, 805
NmuCI GTSAC 3 cut(s) 145, 734, 956
NspI RCATGY 1 cut(s) 100
PagI TCATGA 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 657
PceI AGGCCT 1 cut(s) 237
PctI GAATGC 1 cut(s) 869
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 220, 604, 941
PkrI GCNGC 3 cut(s) 388, 793, 988
PluTI GGCGCC 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 13, 661
PspFI CCCAGC 2 cut(s) 158, 901
PspGI CCWGG 2 cut(s) 13, 661
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 779, 828
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 3 cut(s) 83, 334, 731
RsaNI GTAC 3 cut(s) 82, 333, 730
RseI CAYNNNNRTG 1 cut(s) 812
SatI GCNGC 3 cut(s) 387, 792, 987
Sau3AI GATC 5 cut(s) 420, 459, 560, 721, 908
Sau96I GGNCC 2 cut(s) 779, 828
ScaI AGTACT 2 cut(s) 83, 731
ScrFI CCNGG 2 cut(s) 15, 663
SfaNI GCATC 1 cut(s) 909
SfcI CTRYAG 1 cut(s) 390
SfoI GGCGCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 5 cut(s) 178, 199, 499, 613, 817
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 3 cut(s) 372, 429, 697
SspDI GGCGCC 1 cut(s) 108
SspMI CTAG 2 cut(s) 300, 495
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 13, 661
TaaI ACNGT 7 cut(s) 86, 195, 284, 337, 479, 734, 956
TaqI TCGA 1 cut(s) 286
TasI AATT 5 cut(s) 178, 199, 499, 613, 817
TatI WGTACW 3 cut(s) 81, 332, 729
TfiI GAWTC 3 cut(s) 220, 604, 941
TscAI CASTG 4 cut(s) 412, 814, 921, 961
TseFI GTSAC 3 cut(s) 145, 734, 956
TseI GCWGC 3 cut(s) 386, 791, 986
Tsp45I GTSAC 3 cut(s) 145, 734, 956
TspDTI ATGAA 4 cut(s) 351, 830, 945, 1008
TspRI CASTG 4 cut(s) 412, 814, 921, 961
XapI RAATTY 3 cut(s) 178, 199, 817
XceI RCATGY 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 2 cut(s) 300, 495
ZrmI AGTACT 2 cut(s) 83, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.