FvH4_7g12130

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012482
Physical Location & Seq
Forward (+)
11046301 .. 11049372
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12130.t1

Sequence Viewer

Length: 1338 bp
ATGGAGGGCACCCAAATCGTGAAAGTGAAGCATGAGTTCATTGAGGTGTGTAGTGATGATGAAGAAGAGTCGTCGTCGTCGGCGCCGTCGATCAAGCTCGGTCTTGCGGTCGGCGGTGGAGAGGTGGGGAAGAGGAGGAGGAGTAGTGAGTTCACGGCGGCGCAGTTGAATGAGCTGGAGCAGCAGAGGGTTATATATCAGTATATAGCTGCGGGGTTGCCTGCTCCGTTTCAGCTTGTGCTTCCCATTTGGAAGAGTGTGGCTGGCGCCAGTTTTTCAAACGCTGCTGTCTACCAGCAATATCCCAGCTTTGTAAGATATGGGGGTTTCGACTACAGGAATAAAATGGATCCTGAGCCAGGAAGGTGTAGAAGAACTGATGGAAAAAAATGGAGGTGTAGAAGGGATGTAGTTCCTTATGAGAAGTACTGTCAGAAACACATACACAGAGGGCGCCAACGTTCAAGAAAGCCTGTGGAAGCTTCTGAAGTCACTCCTCCTCCCAGCACAACGCTGCTCAAGAATTCAGGAGGGGAATTGTTAAATTCAAAGAAAAACATTCAGATTCAAACCCAAAAAGGCCTTCTACTTATGGCGCAACCCTCCAATAGCGTTAGTGTCTGCCACAGTCCAACCACCTCTAGTGGCTATCATGAGTTAGCTAAGAATAGTAGTACAGTTGCATACACTACCAGCACTCCTTCATACATAACCGCTACTACCCCTGCTGCTGCTGCCCCTTCCACCACTGCTGGACAAATGCCCGTAACCACTAGCGCTTCCGTTGACAATAACATCTTGATTGGTGCAAAAGACAATGGTTACAGCTACCATGCTAATAATTATGGCATTATCAGAGGAAGCAGAAACACCATCAATGTTGGTAGTAATATAGCACCTGGATTAGGCTTCTCCCCCAAAAGTGTTCTCCAGGCAGGACATATGACTCTTGTAAGTTGCAATGGCTTATACTTTGACAATGGAAGTGGCGAAGAACTTGAACCAGGCAGGTGTAGGAGGACAGATGGAAAGAAGTGGCGGTGCAAAAGTAATGTTCTTCCTAATCAGAAGTATTGTGACCGGCATATCCACAGAGGAGTAAAGCAAATGAGAACCTCCAGCCCTGTTGCCACTGCTTCTACCTCAGCCAGTGCAATGAATTCTACTCGGCCCTCTCAGATCACAGGAATAGCTGAAGAAATCCCTAGTACAAATCTCACCATGTCCATCCCAGCAAGATCACCACTGGTGCAAAATGATGAAAAAAGCAATTCCAGCAGTGACAGTGACGCAACCATTACGGACACCAGCCTTTCTGCTTATGAACAGCTAAGTTAG

Protein Analysis

446

Amino Acids

48.3

Weight (kDa)

9.25

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 51 - 84 3.2e-10 QLQ
WRC PF08879 118 - 160 4.2e-19 WRC
WRC PF08879 334 - 373 1.1e-18 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45480 AT2G45480 AT2G45480
fragaria_vesca FvH4_7g12130 FvH4_7g12130
malus_domestica MD02G1201000.v1.1
prunus_persica Prupe.2G148100_v2.0.a1
pyrus_communis pycom02g16430
rosa_chinensis RchiOBHm_Chr1g0350881
rosa_laevigata RLG00000028446
rosa_multiflora Rmu_sc0014584.1_g000012
rosa_roxburghii Rroxscaffold_4G00304440
rosa_rugosa Rorug01G0214900 Rorug01G0215000
rosa_samantha Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana Rw1G019870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 999
Acc36I ACCTGC 1 cut(s) 999
AccB1I GGYRCC 4 cut(s) 8, 82, 266, 453
AccI GTMKAC 1 cut(s) 291
AciI CCGC 6 cut(s) 107, 114, 158, 212, 714, 1039
AclI AACGTT 1 cut(s) 460
AclWI GGATC 2 cut(s) 344, 357
AcsI RAATTY 3 cut(s) 523, 544, 1159
AcuI CTGAAG 2 cut(s) 507, 1215
AcyI GRCGYC 3 cut(s) 83, 267, 454
AfaI GTAC 3 cut(s) 428, 676, 1210
AfeI AGCGCT 1 cut(s) 778
AfiI CCNNNNNNNGG 2 cut(s) 359, 905
AgsI TTSAA 6 cut(s) 169, 279, 465, 549, 569, 1001
AjnI CCWGG 4 cut(s) 358, 898, 930, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AlwI GGATC 2 cut(s) 344, 357
Aor51HI AGCGCT 1 cut(s) 778
AoxI GGCC 2 cut(s) 580, 1169
ApeKI GCWGC 7 cut(s) 181, 209, 284, 514, 728, 731, 734
ApoI RAATTY 3 cut(s) 523, 544, 1159
AspLEI GCGC 6 cut(s) 85, 163, 269, 456, 598, 779
AspS9I GGNCC 1 cut(s) 1170
AsuHPI GGTGA 2 cut(s) 1210, 1233
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 4 cut(s) 8, 82, 266, 453
BbvCI CCTCAGC 1 cut(s) 1144
BbvI GCAGC 7 cut(s) 193, 196, 271, 501, 715, 718, 721
BccI CCATC 4 cut(s) 374, 881, 1019, 1235
BceAI ACGGC 2 cut(s) 70, 171
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 4 cut(s) 360, 900, 932, 1005
BfaI CTAG 3 cut(s) 642, 774, 1206
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 4 cut(s) 86, 270, 457, 780
BfuAI ACCTGC 1 cut(s) 999
BisI GCNGC 8 cut(s) 159, 182, 210, 285, 515, 729, 732, 735
BlsI GCNGC 8 cut(s) 160, 183, 211, 286, 516, 730, 733, 736
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 360, 900, 932, 1005
BmgT120I GGNCC 1 cut(s) 1170
BmiI GGNNCC 5 cut(s) 10, 84, 268, 351, 455
BmrFI CCNGG 4 cut(s) 360, 900, 932, 1005
BpmI CTGGAG 3 cut(s) 197, 914, 1102
Bpu10I CCTNAGC 2 cut(s) 354, 1144
BpuEI CTTGAG 1 cut(s) 503
BsaHI GRCGYC 3 cut(s) 83, 267, 454
BsaXI ACNNNNNCTCC 8 cut(s) 127, 130, 157, 160, 484, 514, 682, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 905
Bse118I RCCGGY 1 cut(s) 1080
Bse1I ACTGG 3 cut(s) 270, 1149, 1251
Bse3DI GCAATG 2 cut(s) 967, 1161
BseBI CCWGG 4 cut(s) 360, 900, 932, 1005
BseGI GGATG 2 cut(s) 412, 1227
BseLI CCNNNNNNNGG 2 cut(s) 359, 905
BseMI GCAATG 2 cut(s) 967, 1161
BseMII CTCAG 3 cut(s) 345, 1158, 1190
BseNI ACTGG 3 cut(s) 270, 1149, 1251
BseRI GAGGAG 6 cut(s) 148, 151, 154, 486, 489, 1110
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 7 cut(s) 193, 196, 271, 501, 715, 718, 721
BseYI CCCAGC 3 cut(s) 305, 503, 1231
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 582, 1171
BshNI GGYRCC 4 cut(s) 8, 82, 266, 453
BsiEI CGRYCG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 1081
BslI CCNNNNNNNGG 2 cut(s) 359, 905
BsnI GGCC 2 cut(s) 582, 1171
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 90, 349, 1179, 1238
BspACI CCGC 6 cut(s) 107, 114, 158, 212, 714, 1039
BspANI GGCC 2 cut(s) 582, 1171
BspCNI CTCAG 3 cut(s) 346, 1157, 1189
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 5 cut(s) 10, 84, 268, 351, 455
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 2 cut(s) 344, 357
BspT107I GGYRCC 4 cut(s) 8, 82, 266, 453
BsrDI GCAATG 2 cut(s) 967, 1161
BsrFI RCCGGY 1 cut(s) 1080
BsrI ACTGG 3 cut(s) 270, 1149, 1251
BssAI RCCGGY 1 cut(s) 1080
BssMI GATC 4 cut(s) 90, 349, 1179, 1238
BssNI GRCGYC 3 cut(s) 83, 267, 454
Bst2UI CCWGG 4 cut(s) 360, 900, 932, 1005
Bst4CI ACNGT 4 cut(s) 431, 629, 679, 1286
Bst6I CTCTTC 3 cut(s) 60, 125, 248
BstACI GRCGYC 3 cut(s) 83, 267, 454
BstC8I GCNNGC 2 cut(s) 222, 265
BstDEI CTNAG 5 cut(s) 354, 663, 1144, 1176, 1331
BstENI CCTNNNNNAGG 2 cut(s) 357, 903
BstF5I GGATG 2 cut(s) 412, 1227
BstH2I RGCGCY 4 cut(s) 86, 270, 457, 780
BstHHI GCGC 6 cut(s) 85, 163, 269, 456, 598, 779
BstKTI GATC 4 cut(s) 93, 352, 1182, 1241
BstMBI GATC 4 cut(s) 90, 349, 1179, 1238
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 181, 734, 1275
BstNI CCWGG 4 cut(s) 360, 900, 932, 1005
BstSCI CCNGG 4 cut(s) 358, 898, 930, 1003
BstSFI CTRYAG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 7 cut(s) 193, 196, 271, 501, 715, 718, 721
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 2 cut(s) 582, 1171
BtsCI GGATG 2 cut(s) 412, 1227
BtsI GCAGTG 3 cut(s) 747, 1131, 1285
BtsIMutI CAGTG 6 cut(s) 747, 1131, 1156, 1244, 1285, 1291
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 2 cut(s) 222, 265
CciI TCATGA 1 cut(s) 652
CfoI GCGC 6 cut(s) 85, 163, 269, 456, 598, 779
Cfr10I RCCGGY 1 cut(s) 1080
Cfr13I GGNCC 1 cut(s) 1170
CseI GACGC 1 cut(s) 1298
Csp6I GTAC 3 cut(s) 427, 675, 1209
CspCI CAANNNNNGTGG 2 cut(s) 967, 1002
CviAII CATG 4 cut(s) 32, 653, 833, 1222
CviQI GTAC 3 cut(s) 427, 675, 1209
DdeI CTNAG 5 cut(s) 354, 663, 1144, 1176, 1331
DinI GGCGCC 3 cut(s) 84, 268, 455
DpnI GATC 4 cut(s) 92, 351, 1181, 1240
DpnII GATC 4 cut(s) 90, 349, 1179, 1238
Eam1104I CTCTTC 3 cut(s) 60, 125, 248
EarI CTCTTC 3 cut(s) 60, 125, 248
Eco147I AGGCCT 1 cut(s) 582
Eco47III AGCGCT 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 507, 1215
EcoNI CCTNNNNNAGG 2 cut(s) 357, 903
EcoRI GAATTC 2 cut(s) 523, 1159
EcoRII CCWGG 4 cut(s) 358, 898, 930, 1003
EgeI GGCGCC 3 cut(s) 84, 268, 455
EheI GGCGCC 3 cut(s) 84, 268, 455
FaeI CATG 4 cut(s) 35, 656, 836, 1225
FatI CATG 4 cut(s) 31, 652, 832, 1221
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 942
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 8 cut(s) 159, 182, 210, 285, 515, 729, 732, 735
FokI GGATG 2 cut(s) 419, 1214
Fsp4HI GCNGC 8 cut(s) 159, 182, 210, 285, 515, 729, 732, 735
FspBI CTAG 3 cut(s) 642, 774, 1206
GlaI GCGC 6 cut(s) 84, 162, 268, 455, 597, 778
GluI GCNGC 8 cut(s) 159, 182, 210, 285, 515, 729, 732, 735
GsaI CCCAGC 3 cut(s) 309, 507, 1235
GsuI CTGGAG 3 cut(s) 197, 914, 1102
HaeII RGCGCY 4 cut(s) 86, 270, 457, 780
HaeIII GGCC 2 cut(s) 582, 1171
HapII CCGG 1 cut(s) 1081
HgaI GACGC 1 cut(s) 1298
HhaI GCGC 6 cut(s) 85, 163, 269, 456, 598, 779
Hin1I GRCGYC 3 cut(s) 83, 267, 454
Hin1II CATG 4 cut(s) 35, 656, 836, 1225
Hin6I GCGC 6 cut(s) 83, 161, 267, 454, 596, 777
HinP1I GCGC 6 cut(s) 83, 161, 267, 454, 596, 777
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 3 cut(s) 68, 565, 946
HpaII CCGG 1 cut(s) 1081
HphI GGTGA 2 cut(s) 1210, 1233
Hpy166II GTNNAC 3 cut(s) 153, 292, 787
Hpy188I TCNGA 6 cut(s) 435, 487, 564, 857, 1068, 1179
Hpy188III TCNNGA 7 cut(s) 19, 353, 465, 520, 528, 653, 799
Hpy8I GTNNAC 3 cut(s) 153, 292, 787
Hpy99I CGWCG 4 cut(s) 76, 79, 82, 91
HpyAV CCTTC 5 cut(s) 357, 396, 593, 711, 750
HpyCH4III ACNGT 4 cut(s) 431, 629, 679, 1286
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 6 cut(s) 683, 809, 960, 1044, 1154, 1252
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 734, 1275
HpyF3I CTNAG 5 cut(s) 354, 663, 1144, 1176, 1331
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 3 cut(s) 83, 267, 454
Hsp92II CATG 4 cut(s) 35, 656, 836, 1225
HspAI GCGC 6 cut(s) 83, 161, 267, 454, 596, 777
KasI GGCGCC 3 cut(s) 82, 266, 453
Kzo9I GATC 4 cut(s) 90, 349, 1179, 1238
LmnI GCTCC 2 cut(s) 178, 229
Lsp1109I GCAGC 7 cut(s) 193, 196, 271, 501, 715, 718, 721
MaeI CTAG 3 cut(s) 642, 774, 1206
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 6 cut(s) 490, 766, 821, 1076, 1280, 1286
MalI GATC 4 cut(s) 92, 351, 1181, 1240
MboI GATC 4 cut(s) 90, 349, 1179, 1238
MboII GAAGA 8 cut(s) 74, 77, 142, 265, 384, 1004, 1049, 1208
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 523, 536, 544, 841, 1159, 1270
Mly113I GGCGCC 3 cut(s) 83, 267, 454
MlyI GAGTC 2 cut(s) 77, 940
MmeI TCCRAC 1 cut(s) 656
MseI TTAA 1 cut(s) 542
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 1081
MspR9I CCNGG 4 cut(s) 360, 900, 932, 1005
MvaI CCWGG 4 cut(s) 360, 900, 932, 1005
MwoI GCNNNNNNNGC 3 cut(s) 181, 734, 1275
NarI GGCGCC 3 cut(s) 83, 267, 454
NdeI CATATG 1 cut(s) 942
NdeII GATC 4 cut(s) 90, 349, 1179, 1238
NlaIII CATG 4 cut(s) 35, 656, 836, 1225
NlaIV GGNNCC 5 cut(s) 10, 84, 268, 351, 455
NmeAIII GCCGAG 1 cut(s) 1147
NmuCI GTSAC 4 cut(s) 490, 1076, 1280, 1286
PagI TCATGA 1 cut(s) 652
PaqCI CACCTGC 1 cut(s) 999
PceI AGGCCT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 83, 86
PfeI GAWTC 1 cut(s) 565
PkrI GCNGC 8 cut(s) 160, 183, 211, 286, 516, 730, 733, 736
PleI GAGTC 2 cut(s) 76, 940
PluTI GGCGCC 3 cut(s) 86, 270, 457
PpsI GAGTC 2 cut(s) 76, 940
Psp1406I AACGTT 1 cut(s) 460
Psp6I CCWGG 4 cut(s) 358, 898, 930, 1003
PspFI CCCAGC 3 cut(s) 305, 503, 1231
PspGI CCWGG 4 cut(s) 358, 898, 930, 1003
PspN4I GGNNCC 5 cut(s) 10, 84, 268, 351, 455
PspPI GGNCC 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 428, 676, 1210
RsaNI GTAC 3 cut(s) 427, 675, 1209
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 8 cut(s) 159, 182, 210, 285, 515, 729, 732, 735
Sau3AI GATC 4 cut(s) 90, 349, 1179, 1238
Sau96I GGNCC 1 cut(s) 1170
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 2 cut(s) 77, 940
ScrFI CCNGG 4 cut(s) 360, 900, 932, 1005
SduI GDGCHC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 334
SfoI GGCGCC 3 cut(s) 84, 268, 455
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 6 cut(s) 523, 536, 544, 841, 1159, 1270
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 6 cut(s) 107, 114, 158, 212, 714, 1039
SspDI GGCGCC 3 cut(s) 82, 266, 453
SspMI CTAG 3 cut(s) 642, 774, 1206
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 4 cut(s) 358, 898, 930, 1003
TaaI ACNGT 4 cut(s) 431, 629, 679, 1286
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 89, 330
TaqII GACCGA 1 cut(s) 89
TasI AATT 6 cut(s) 523, 536, 544, 841, 1159, 1270
TatI WGTACW 3 cut(s) 426, 674, 1208
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 6 cut(s) 754, 1138, 1156, 1251, 1285, 1291
TseFI GTSAC 4 cut(s) 490, 1076, 1280, 1286
TseI GCWGC 7 cut(s) 181, 209, 284, 514, 728, 731, 734
Tsp45I GTSAC 4 cut(s) 490, 1076, 1280, 1286
TspDTI ATGAA 6 cut(s) 28, 75, 693, 1172, 1275, 1338
TspGWI ACGGA 3 cut(s) 216, 772, 1316
TspRI CASTG 6 cut(s) 754, 1138, 1156, 1251, 1285, 1291
XagI CCTNNNNNAGG 2 cut(s) 357, 903
XapI RAATTY 3 cut(s) 523, 544, 1159
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 3 cut(s) 642, 774, 1206
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.