Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012482

Physical Location & Seq

Genomic Coordinates Reverse (-)

19847667 .. 19850955

Gene Structure 3289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1201000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAGGATGGAATTATGAGGAGAGAGAAAGAGGAGAGAGAAGAGGTGAAACTTGGACTTGGTATTGGGGTTGGTTGTAATTATGGTGATCAGAACGGGAAGAAGAAGAAGATGAAGTGTGGTGGCGGTGGTGGTGGTGTTGGTGGTGGTTGTGGTGGTGGGTTTACGGCTGTGCAGCTGCATGAGCTGGAGGAACAAGCGCTTATCTATAAGCACTTAGCTGCCGGGGTACCAGTGCCGGTTCAGCTTTTGGTTCCAATATGGAACAGTGTGGCTGCCTCTTTTGGCTCCTCAAATGCTGCTGCTATCTATCAGCACTTCCCCACCTTTATAGGATTCAATCCTGTGGGGGGCTTTGACTATCGAAGTAAAATGGATCCTGAGCCGGGAAGGTGCAGAAGAACAGATGGAAAGAAATGGAGGTGTAGTAAGAGTGTAGTTCCTGGTCAGAAATACTGTCAGCAACACATGCACAGAGGCTGCCAGCGTTCAAGAAAGCATGTGGAAACTTCTGAAACGTCTTCTCCTTCCAGCGCAAAACAACCCAAGAATACAGATGCTGAGTTGTGCAGTTCAAAGACAAACCTTCGGATTTCAACTCCGAATGGCCTTCATCTTAAGGCCCAATCCTCGGATAATATTGGTGTCAGCCAAGGTACAACCAATGCCTCCAGTGGCTATCAAGAATGTAAGACAAACATCCGATCTGTTACAACTACATCCGTTGCCATGATACCTGCCAATAGAACTGCTACATCCCCTGCTTCTGCAGTCACTATTGCACATGCTGGACCAACCGCTGCCACCAACAGCAGTAGCAACAAAAATAGCATCAGCATTGGTGTAAAAGAATATAGTAGCAACCATGCTGGTGACAATTGCATGATCAGAGGAAGCAGCCTCAACAGAAATAGCACCATTGTTGGTAGTACTATATCACCAGGATTGGGCTTCTCCCCGAAGAGCGTTCTTCAGGGTAGACAAATGACTTTTCTAATTTCCAATGGCGTATGCTTCAACAATAGTAGCGGGACAGAGCTTGAACCAAGGAGGTGTAGGAGAACGGATGGAAAGAAGTGGCGCTGCAGAAGGGATGTTCTTCCTGACCAGAAGTATTGTGGTCTGCATGTCCACAGAGGAGCAAAGAGGCAAACGAAAGACTCCCAGCCAATTGGTGTTCCTTCTAGTTCAGTTGCTTCCATGAACACTGCTCAGATCTCTCAGACGACATCCACTACCAAAAAAACTGATCGTGCAATCCCCAATACAAATCTCAGCATGTCCATCCCAGCAAGGCCCCCACCGATGCAAAATGATGAAAAAAGCAATTCAAGCGGAGATAGTGACACGACCATTACAGACACCAGCCTTGCTGCTTACGAGGGTAGTTATGTTTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

468

Amino Acids

49.85

Weight (kDa)

9.53

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	55 - 88	7.2e-13	QLQ
WRC	PF08879	127 - 169	5.5e-19	WRC
WRC	PF08879	348 - 387	1.1e-16	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45480 AT2G45480 AT2G45480
fragaria_vesca	FvH4_7g12130 FvH4_7g12130
malus_domestica	MD02G1201000.v1.1
prunus_persica	Prupe.2G148100_v2.0.a1
pyrus_communis	pycom02g16430
rosa_chinensis	RchiOBHm_Chr1g0350881
rosa_laevigata	RLG00000028446
rosa_multiflora	Rmu_sc0014584.1_g000012
rosa_roxburghii	Rroxscaffold_4G00304440
rosa_rugosa	Rorug01G0214900 Rorug01G0215000
rosa_samantha	Rh1AG229300 Rh1BG199300 Rh1CG214100 Rh1DG227200
rosa_wichuraiana	Rw1G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	979
AciI	CCGC	4 cut(s)	126, 798, 1029, 1335
AclWI	GGATC	2 cut(s)	371, 384
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	3 cut(s)	231, 658, 931
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	4 cut(s)	350, 386, 631, 947
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	7 cut(s)	340, 492, 576, 597, 1018, 1043, 1332
AjnI	CCWGG	2 cut(s)	442, 940
AluBI	AGCT	5 cut(s)	178, 187, 221, 247, 1039
AluI	AGCT	5 cut(s)	178, 187, 221, 247, 1039
AlwI	GGATC	2 cut(s)	371, 384
AlwNI	CAGNNNCTG	2 cut(s)	480, 560
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	3 cut(s)	607, 621, 1295
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	202, 536, 1083
AspS9I	GGNCC	3 cut(s)	622, 791, 1296
AsuC2I	CCSGG	2 cut(s)	226, 387
AsuHPI	GGTGA	4 cut(s)	58, 98, 884, 930
AvaII	GGWCC	1 cut(s)	791
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	513
BccI	CCATC	4 cut(s)	2, 401, 1061, 1292
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	444, 942
BclI	TGATCA	2 cut(s)	88, 885
BcnI	CCSGG	2 cut(s)	226, 387
BfaI	CTAG	1 cut(s)	1185
BfmI	CTRYAG	2 cut(s)	768, 1084
BfoI	RGCGCY	2 cut(s)	203, 1084
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	1215
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	4 cut(s)	226, 387, 444, 942
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	3 cut(s)	622, 791, 1296
BmiI	GGNNCC	5 cut(s)	231, 255, 289, 378, 1298
BmrFI	CCNGG	4 cut(s)	226, 387, 444, 942
BmsI	GCATC	3 cut(s)	547, 840, 1296
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	2 cut(s)	209, 655
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	226, 387
BsaJI	CCNNGG	4 cut(s)	225, 630, 652, 1046
BsaXI	ACNNNNNCTCC	4 cut(s)	412, 442, 508, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 386, 631, 947
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	233, 672
BseBI	CCWGG	2 cut(s)	444, 942
BseDI	CCNNGG	4 cut(s)	225, 630, 652, 1046
BseGI	GGATG	8 cut(s)	13, 699, 719, 755, 1072, 1099, 1229, 1284
BseLI	CCNNNNNNNGG	4 cut(s)	350, 386, 631, 947
BseMII	CTCAG	5 cut(s)	372, 552, 1226, 1235, 1288
BseNI	ACTGG	2 cut(s)	233, 672
BseRI	GAGGAG	4 cut(s)	34, 47, 280, 1152
BseYI	CCCAGC	2 cut(s)	1164, 1288
BsgI	GTGCAG	3 cut(s)	194, 415, 589
BshFI	GGCC	3 cut(s)	609, 623, 1297
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	225, 239, 386
BslFI	GGGAC	1 cut(s)	1045
BslI	CCNNNNNNNGG	4 cut(s)	350, 386, 631, 947
BsmFI	GGGAC	1 cut(s)	1045
BsnI	GGCC	3 cut(s)	609, 623, 1297
Bsp143I	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
BspACI	CCGC	4 cut(s)	126, 798, 1029, 1335
BspANI	GGCC	3 cut(s)	609, 623, 1297
BspCNI	CTCAG	5 cut(s)	373, 553, 1225, 1234, 1287
BspLI	GGNNCC	5 cut(s)	231, 255, 289, 378, 1298
BspMAI	CTGCAG	2 cut(s)	772, 1088
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	371, 384
BspQI	GCTCTTC	1 cut(s)	956
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	233, 672
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	225, 630, 652, 1046
BssMI	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
BssT1I	CCWWGG	2 cut(s)	652, 1046
Bst2UI	CCWGG	2 cut(s)	444, 942
Bst4CI	ACNGT	2 cut(s)	269, 458
Bst6I	CTCTTC	2 cut(s)	36, 956
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	6 cut(s)	217, 381, 561, 1212, 1221, 1274
BstF5I	GGATG	8 cut(s)	13, 699, 719, 755, 1072, 1099, 1229, 1284
BstH2I	RGCGCY	2 cut(s)	203, 1084
BstHHI	GCGC	3 cut(s)	202, 536, 1083
BstKTI	GATC	6 cut(s)	91, 379, 707, 888, 1218, 1252
BstMBI	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 244, 469, 1332
BstNI	CCWGG	2 cut(s)	444, 942
BstNSI	RCATGY	5 cut(s)	472, 503, 788, 1130, 1282
BstSCI	CCNGG	4 cut(s)	224, 385, 442, 940
BstSFI	CTRYAG	2 cut(s)	768, 1084
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	376, 1215
BstXI	CCANNNNNNTGG	1 cut(s)	1172
BstYI	RGATCY	2 cut(s)	376, 1215
BsuRI	GGCC	3 cut(s)	609, 623, 1297
BtsCI	GGATG	8 cut(s)	13, 699, 719, 755, 1072, 1099, 1229, 1284
BtsI	GCAGTG	1 cut(s)	1206
BtsIMutI	CAGTG	4 cut(s)	240, 274, 679, 1206
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	2 cut(s)	480, 560
CfoI	GCGC	3 cut(s)	202, 536, 1083
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	622, 791, 1296
Csp6I	GTAC	3 cut(s)	230, 657, 930
CviQI	GTAC	3 cut(s)	230, 657, 930
DdeI	CTNAG	6 cut(s)	217, 381, 561, 1212, 1221, 1274
DpnI	GATC	6 cut(s)	90, 378, 706, 887, 1217, 1251
DpnII	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
Eam1104I	CTCTTC	2 cut(s)	36, 956
EarI	CTCTTC	2 cut(s)	36, 956
Eco130I	CCWWGG	2 cut(s)	652, 1046
Eco47I	GGWCC	1 cut(s)	791
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	1296
EcoRII	CCWGG	2 cut(s)	442, 940
EcoT14I	CCWWGG	2 cut(s)	652, 1046
ErhI	CCWWGG	2 cut(s)	652, 1046
FaqI	GGGAC	1 cut(s)	1045
FauI	CCCGC	1 cut(s)	1022
FbaI	TGATCA	2 cut(s)	88, 885
FblI	GTMKAC	1 cut(s)	979
FokI	GGATG	8 cut(s)	20, 686, 706, 742, 1079, 1106, 1216, 1271
FspBI	CTAG	1 cut(s)	1185
GlaI	GCGC	3 cut(s)	201, 535, 1082
GsaI	CCCAGC	2 cut(s)	1168, 1292
GsuI	CTGGAG	2 cut(s)	209, 655
HaeII	RGCGCY	2 cut(s)	203, 1084
HaeIII	GGCC	3 cut(s)	609, 623, 1297
HapII	CCGG	3 cut(s)	225, 239, 386
HhaI	GCGC	3 cut(s)	202, 536, 1083
Hin6I	GCGC	3 cut(s)	200, 534, 1081
HinP1I	GCGC	3 cut(s)	200, 534, 1081
HinfI	GANTC	2 cut(s)	336, 1160
HpaII	CCGG	3 cut(s)	225, 239, 386
HphI	GGTGA	4 cut(s)	58, 98, 884, 930
Hpy166II	GTNNAC	3 cut(s)	165, 980, 1132
Hpy188III	TCNNGA	4 cut(s)	380, 492, 683, 1103
Hpy8I	GTNNAC	3 cut(s)	165, 980, 1132
HpyAV	CCTTC	6 cut(s)	384, 537, 596, 620, 1083, 1191
HpyCH4III	ACNGT	2 cut(s)	269, 458
HpyCH4IV	ACGT	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 244, 469, 1332
HpyF3I	CTNAG	6 cut(s)	217, 381, 561, 1212, 1221, 1274
HpySE526I	ACGT	1 cut(s)	518
HspAI	GCGC	3 cut(s)	200, 534, 1081
KpnI	GGTACC	1 cut(s)	233
Ksp22I	TGATCA	2 cut(s)	88, 885
Kzo9I	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
LguI	GCTCTTC	1 cut(s)	956
LmnI	GCTCC	2 cut(s)	293, 1139
LweI	GCATC	3 cut(s)	547, 840, 1296
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	4 cut(s)	709, 772, 872, 1343
MalI	GATC	6 cut(s)	90, 378, 706, 887, 1217, 1251
MboI	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
MfeI	CAATTG	2 cut(s)	877, 1170
MflI	RGATCY	2 cut(s)	376, 1215
MluCI	AATT	6 cut(s)	12, 79, 877, 996, 1170, 1327
MlyI	GAGTC	1 cut(s)	1154
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	178, 800
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	3 cut(s)	225, 239, 386
MspR9I	CCNGG	4 cut(s)	226, 387, 444, 942
MunI	CAATTG	2 cut(s)	877, 1170
MvaI	CCWGG	2 cut(s)	444, 942
MwoI	GCNNNNNNNGC	4 cut(s)	184, 244, 469, 1332
NciI	CCSGG	2 cut(s)	226, 387
NdeII	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
NlaIV	GGNNCC	5 cut(s)	231, 255, 289, 378, 1298
NmuCI	GTSAC	3 cut(s)	772, 872, 1343
NspI	RCATGY	5 cut(s)	472, 503, 788, 1130, 1282
PciSI	GCTCTTC	1 cut(s)	956
PfeI	GAWTC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	1154
PpsI	GAGTC	1 cut(s)	1154
Psp6I	CCWGG	2 cut(s)	442, 940
PspFI	CCCAGC	2 cut(s)	1164, 1288
PspGI	CCWGG	2 cut(s)	442, 940
PspN4I	GGNNCC	5 cut(s)	231, 255, 289, 378, 1298
PspPI	GGNCC	3 cut(s)	622, 791, 1296
PstI	CTGCAG	2 cut(s)	772, 1088
PstNI	CAGNNNCTG	2 cut(s)	480, 560
PsuI	RGATCY	2 cut(s)	376, 1215
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	231, 658, 931
RsaNI	GTAC	3 cut(s)	230, 657, 930
RseI	CAYNNNNRTG	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	956
SaqAI	TTAA	1 cut(s)	618
Sau3AI	GATC	6 cut(s)	88, 376, 704, 885, 1215, 1249
Sau96I	GGNCC	3 cut(s)	622, 791, 1296
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	1 cut(s)	1154
ScrFI	CCNGG	4 cut(s)	226, 387, 444, 942
SfaNI	GCATC	3 cut(s)	547, 840, 1296
SfcI	CTRYAG	2 cut(s)	768, 1084
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	6 cut(s)	12, 79, 877, 996, 1170, 1327
SsiI	CCGC	4 cut(s)	126, 798, 1029, 1335
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	1185
StyD4I	CCNGG	4 cut(s)	224, 385, 442, 940
StyI	CCWWGG	2 cut(s)	652, 1046
TaaI	ACNGT	2 cut(s)	269, 458
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	1 cut(s)	364
TasI	AATT	6 cut(s)	12, 79, 877, 996, 1170, 1327
TatI	WGTACW	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	4 cut(s)	240, 274, 679, 1213
TseFI	GTSAC	3 cut(s)	772, 872, 1343
Tsp45I	GTSAC	3 cut(s)	772, 872, 1343
TspDTI	ATGAA	5 cut(s)	128, 602, 1217, 1332, 1386
TspGWI	ACGGA	2 cut(s)	712, 1079
TspRI	CASTG	4 cut(s)	240, 274, 679, 1213
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	791
XceI	RCATGY	5 cut(s)	472, 503, 788, 1130, 1282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XmiI	GTMKAC	1 cut(s)	979
XspI	CTAG	1 cut(s)	1185
ZrmI	AGTACT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.