AT2G47220

polyribonucleotide nucleotidyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008286
Physical Location & Seq
Forward (+)
19383743 .. 19386954
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47220.1

Sequence Viewer

Length: 1410 bp
ATGATACCGATGACGCTGACTCCGTCGGCGATGGGTCTCTGGCTTGTTCCTAACCACGTATCTGTCAAAATTCCATTCGGAAATAGAGAGATTTTAGTTGAGACTGGTCTCATGGGGAGACAAGCAAGTTCTGCAGTCACGGTGACAGATGGAGAAACTATTGTCTTCACATCCGTTTGTCTAGCTGATGTTCCGAGTGAGCCATCAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTAGGTCGAACTAGTGGTGGATTTTTTAAGCGAGAAGGGAGAACCAAAGATCACGAGGTTACTTTTCTTTGCCTTCCTGCAGCCTCCTACATCACCGGACAGGAAGAGCTAAAAGCATGCTTAAATGATTGGAAATCCAATGGTTTAGTGGTGTCTGGTTTGGTTAGAGATCAGAGGGAGAAGTTGATTCAGGAAGTGTCTTCCACGTTCAGTGGCAAGCTCAACATTCTTTCGCCATTAGCTCAAGGATCAGGGAATAATATGGGTGGTTCTGTGATGAATGGTAATACTCCTCCATCACTAGACTCTAATGAATCTGTTTCACCTGTAACCTCTTCCCCGGTTATAACTTCAACACCGTTGGAACATACAGAGGCTGGAACTAAAGGAAAGACGGTCCCCAAGAAGACACTTCAGCCAATGGAAATGAATCAACTCGAGAGAAGTGAAGATAACAGTCGTAAGAGGAAAAGAGGAGAACTGGAGCATAATTCGGACCTCAACGAGACTGTGCTACCCTCTGATTGGACTCCCGATCCTGTGAAGAATTTTGCTGCTGATGATGATGATGAGGAAACCAAAGCAAAGGATGCAACAATGGTTCTGCCTTTTGTGAAGAAGTCACCGGTTTGGAAGATATATGAATCAATGGAGGTCTTCAAAAGAGTACCACAAAGTCCTCATTTCAGCCCATTGTTTGAAGCAAAAGAAGATTTCCGTGAAGGTTTTGCTTTGGGTATGATGGTGACTTTTTCTGGGGTATTAGAAAAAGTAGAAGATCTGAAAACCGACGTTCCCATACGCCAACTAAATAGCCTTAAAGACTCATTTACCGAGCTAGAGAAGCATGGATTCACGGTCACAGCGCCTTTATCTCGGATCGCCAAGCTGTTAGCTCTCAAAGATAGACAACTAAAAATATTGGAGGAACTAAAAGTTTTCGACAAAGAGATGAAAGATGAATCTAGCAAAAAGCATAAAGCTGAGCAAGAGTTTGGTGAGATGGAACGCAAGATTCTTGAAGTGAAAAACAAGGTTCTGGAGCTGCAGAAGCAAGAAGCGGCTCTGGAAAAACAGAAGGATGCAACCTATGAAAAGATATGTAAAATGGAGTCACGTGCAAGAGATCTTGGTGTAGAGCTTGAAGATGTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0046983 GO:0047038 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0055114 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00040 ko00230 ko00240 ko01100 ko03018 map00040 map00230 map00240 map01100 map03018
Pfam Domains
Protein Families
KH_1 Methyltransf_3 RNase_PH RNase_PH_C S1 adh_short_C2

Protein Analysis

469

Amino Acids

52.4

Weight (kDa)

5.43

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 29 - 105 2.9e-08 3' exoribonuclease family, domain 1
DUF724 PF05266 285 - 469 3.9e-66 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AciI CCGC 1 cut(s) 1313
AclWI GGATC 3 cut(s) 508, 782, 1139
AcsI RAATTY 2 cut(s) 69, 799
AcuI CTGAAG 1 cut(s) 650
AcvI CACGTG 1 cut(s) 1370
AfaI GTAC 1 cut(s) 921
AfiI CCNNNNNNNGG 1 cut(s) 777
AgeI ACCGGT 1 cut(s) 877
AgsI TTSAA 5 cut(s) 606, 913, 953, 1274, 1397
AhlI ACTAGT 1 cut(s) 263
Alw26I GTCTC 5 cut(s) 41, 95, 112, 113, 752
AlwI GGATC 3 cut(s) 508, 782, 1139
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 689
ApeKI GCWGC 3 cut(s) 332, 806, 1297
ApoI RAATTY 2 cut(s) 69, 799
AsiGI ACCGGT 1 cut(s) 877
AspLEI GCGC 1 cut(s) 1120
AspS9I GGNCC 2 cut(s) 649, 748
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 6 cut(s) 154, 337, 567, 867, 1009, 1262
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 2 cut(s) 649, 748
BauI CACGAG 1 cut(s) 305
BbrPI CACGTG 1 cut(s) 1370
BbsI GAAGAC 4 cut(s) 157, 444, 665, 901
BbvI GCAGC 3 cut(s) 344, 793, 1284
BccI CCATC 6 cut(s) 25, 143, 211, 556, 988, 1249
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 5 cut(s) 41, 95, 112, 113, 752
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 5 cut(s) 182, 264, 554, 1091, 1218
BfmI CTRYAG 4 cut(s) 132, 252, 330, 1298
BfoI RGCGCY 1 cut(s) 1121
BglII AGATCT 2 cut(s) 1030, 1378
BisI GCNGC 4 cut(s) 333, 807, 1298, 1314
BlpI GCTNAGC 1 cut(s) 1236
BlsI GCNGC 4 cut(s) 334, 808, 1299, 1315
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 2 cut(s) 649, 748
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 649, 748
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 832, 1324
BpiI GAAGAC 4 cut(s) 157, 444, 665, 901
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 2 cut(s) 755, 1313
Bpu1102I GCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 2 cut(s) 58, 1370
BsaI GGTCTC 2 cut(s) 41, 113
BsaJI CCNNGG 1 cut(s) 591
BsaWI WCCGGW 2 cut(s) 347, 877
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 777
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 2 cut(s) 109, 738
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 3 cut(s) 170, 847, 1339
BseLI CCNNNNNNNGG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 261, 1227
BseNI ACTGG 2 cut(s) 109, 738
BseRI GAGGAG 2 cut(s) 534, 741
BseXI GCAGC 3 cut(s) 344, 793, 1284
BshTI ACCGGT 1 cut(s) 877
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 3 cut(s) 348, 593, 878
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 777
BsmAI GTCTC 5 cut(s) 41, 95, 112, 113, 752
BsmFI GGGAC 1 cut(s) 635
Bso31I GGTCTC 2 cut(s) 41, 113
BsoBI CYCGRG 1 cut(s) 689
Bsp143I GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
Bsp1720I GCTNAGC 1 cut(s) 1236
BspACI CCGC 1 cut(s) 1313
BspCNI CTCAG 2 cut(s) 260, 1228
BspLI GGNNCC 1 cut(s) 651
BspMAI CTGCAG 3 cut(s) 136, 334, 1302
BspPI GGATC 3 cut(s) 508, 782, 1139
BspQI GCTCTTC 1 cut(s) 351
BspTNI GGTCTC 2 cut(s) 41, 113
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 2 cut(s) 109, 738
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 6 cut(s) 142, 612, 649, 710, 763, 1111
Bst6I CTCTTC 2 cut(s) 351, 592
BstAPI GCANNNNNTGC 2 cut(s) 131, 842
BstBAI YACGTR 2 cut(s) 58, 1370
BstC8I GCNNGC 2 cut(s) 370, 470
BstDEI CTNAG 2 cut(s) 247, 1236
BstF5I GGATG 3 cut(s) 170, 847, 1339
BstH2I RGCGCY 1 cut(s) 1121
BstHHI GCGC 1 cut(s) 1120
BstKTI GATC 7 cut(s) 304, 424, 503, 790, 1033, 1134, 1381
BstMAI GTCTC 5 cut(s) 41, 95, 112, 113, 752
BstMBI GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
BstMWI GCNNNNNNNGC 4 cut(s) 131, 842, 1096, 1303
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 4 cut(s) 132, 252, 330, 1298
BstV1I GCAGC 3 cut(s) 344, 793, 1284
BstV2I GAAGAC 4 cut(s) 157, 444, 665, 901
BstX2I RGATCY 2 cut(s) 1030, 1378
BstYI RGATCY 2 cut(s) 1030, 1378
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 170, 847, 1339
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 370, 470
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 1120
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 2 cut(s) 649, 748
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 920
CspAI ACCGGT 1 cut(s) 877
CviAII CATG 3 cut(s) 112, 369, 1100
CviQI GTAC 1 cut(s) 920
DdeI CTNAG 2 cut(s) 247, 1236
DpnI GATC 7 cut(s) 303, 423, 502, 789, 1032, 1133, 1380
DpnII GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
Eam1104I CTCTTC 2 cut(s) 351, 592
EarI CTCTTC 2 cut(s) 351, 592
Eco31I GGTCTC 2 cut(s) 41, 113
Eco47I GGWCC 2 cut(s) 649, 748
Eco57I CTGAAG 1 cut(s) 650
Eco72I CACGTG 1 cut(s) 1370
Eco88I CYCGRG 1 cut(s) 689
FaeI CATG 3 cut(s) 115, 372, 1103
FaqI GGGAC 1 cut(s) 635
FatI CATG 3 cut(s) 111, 368, 1099
Fnu4HI GCNGC 4 cut(s) 333, 807, 1298, 1314
FokI GGATG 3 cut(s) 157, 854, 1346
Fsp4HI GCNGC 4 cut(s) 333, 807, 1298, 1314
FspBI CTAG 5 cut(s) 182, 264, 554, 1091, 1218
GlaI GCGC 1 cut(s) 1119
GluI GCNGC 4 cut(s) 333, 807, 1298, 1314
GsuI CTGGAG 2 cut(s) 755, 1313
HaeII RGCGCY 1 cut(s) 1121
HapII CCGG 3 cut(s) 348, 593, 878
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 1120
Hin1II CATG 3 cut(s) 115, 372, 1103
Hin6I GCGC 1 cut(s) 1118
HinP1I GCGC 1 cut(s) 1118
HpaII CCGG 3 cut(s) 348, 593, 878
HphI GGTGA 6 cut(s) 154, 337, 567, 867, 1009, 1262
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 8 cut(s) 80, 195, 208, 426, 748, 775, 1035, 1131
Hpy188III TCNNGA 8 cut(s) 236, 305, 443, 691, 785, 1271, 1292, 1319
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 28, 1046
HpyAV CCTTC 4 cut(s) 281, 335, 968, 1324
HpyCH4III ACNGT 6 cut(s) 142, 612, 649, 710, 763, 1111
HpyCH4IV ACGT 4 cut(s) 57, 458, 1044, 1369
HpyCH4V TGCA 6 cut(s) 134, 332, 845, 1300, 1337, 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 842, 1096, 1303
HpyF3I CTNAG 2 cut(s) 247, 1236
HpySE526I ACGT 4 cut(s) 57, 458, 1044, 1369
Hsp92II CATG 3 cut(s) 115, 372, 1103
HspAI GCGC 1 cut(s) 1118
Kzo9I GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 3 cut(s) 238, 736, 1294
Lsp1109I GCAGC 3 cut(s) 344, 793, 1284
LweI GCATC 2 cut(s) 832, 1324
MaeI CTAG 5 cut(s) 182, 264, 554, 1091, 1218
MaeII ACGT 4 cut(s) 57, 458, 1044, 1369
MaeIII GTNAC 8 cut(s) 136, 142, 310, 580, 873, 997, 1111, 1365
MalI GATC 7 cut(s) 303, 423, 502, 789, 1032, 1133, 1380
MboI GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
MflI RGATCY 2 cut(s) 1030, 1378
MluCI AATT 3 cut(s) 69, 742, 799
MlyI GAGTC 5 cut(s) 13, 551, 775, 1070, 1373
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 3 cut(s) 279, 374, 1071
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 348, 593, 878
MspR9I CCNGG 1 cut(s) 593
MwoI GCNNNNNNNGC 4 cut(s) 131, 842, 1096, 1303
NciI CCSGG 1 cut(s) 593
NdeII GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
NlaIII CATG 3 cut(s) 115, 372, 1103
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 6 cut(s) 136, 142, 873, 997, 1111, 1365
NspI RCATGY 1 cut(s) 372
PaeI GCATGC 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 689
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 8 cut(s) 243, 439, 566, 682, 896, 1104, 1214, 1267
PflFI GACNNNGTC 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 877
PkrI GCNGC 4 cut(s) 334, 808, 1299, 1315
PleI GAGTC 5 cut(s) 13, 551, 775, 1070, 1372
PmaCI CACGTG 1 cut(s) 1370
PmlI CACGTG 1 cut(s) 1370
PpsI GAGTC 5 cut(s) 13, 551, 775, 1070, 1372
Ppu21I YACGTR 2 cut(s) 58, 1370
PsiI TTATAA 1 cut(s) 599
PspCI CACGTG 1 cut(s) 1370
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 2 cut(s) 649, 748
PstI CTGCAG 3 cut(s) 136, 334, 1302
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 1030, 1378
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 921
RsaNI GTAC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 279, 374, 1071
SatI GCNGC 4 cut(s) 333, 807, 1298, 1314
Sau3AI GATC 7 cut(s) 301, 421, 500, 787, 1030, 1131, 1378
Sau96I GGNCC 2 cut(s) 649, 748
SchI GAGTC 5 cut(s) 13, 551, 775, 1070, 1373
ScrFI CCNGG 1 cut(s) 593
SfaNI GCATC 2 cut(s) 832, 1324
SfcI CTRYAG 4 cut(s) 132, 252, 330, 1298
Sfr274I CTCGAG 1 cut(s) 689
SinI GGWCC 2 cut(s) 649, 748
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 495, 689
SmoI CTYRAG 2 cut(s) 495, 689
SpeI ACTAGT 1 cut(s) 263
SphI GCATGC 1 cut(s) 372
Sse9I AATT 3 cut(s) 69, 742, 799
SsiI CCGC 1 cut(s) 1313
SspI AATATT 1 cut(s) 1173
SspMI CTAG 5 cut(s) 182, 264, 554, 1091, 1218
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 6 cut(s) 142, 612, 649, 710, 763, 1111
TaiI ACGT 4 cut(s) 60, 461, 1047, 1372
TaqI TCGA 3 cut(s) 259, 690, 1194
TasI AATT 3 cut(s) 69, 742, 799
TauI GCSGC 1 cut(s) 1316
TfiI GAWTC 8 cut(s) 243, 439, 566, 682, 896, 1104, 1214, 1267
Tru1I TTAA 3 cut(s) 279, 374, 1071
Tru9I TTAA 3 cut(s) 279, 374, 1071
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 6 cut(s) 136, 142, 873, 997, 1111, 1365
TseI GCWGC 3 cut(s) 332, 806, 1297
Tsp45I GTSAC 6 cut(s) 136, 142, 873, 997, 1111, 1365
TspDTI ATGAA 7 cut(s) 545, 579, 695, 909, 1220, 1227, 1359
TspGWI ACGGA 3 cut(s) 12, 163, 959
TspRI CASTG 1 cut(s) 469
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 649, 748
XapI RAATTY 2 cut(s) 69, 799
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 689
XspI CTAG 5 cut(s) 182, 264, 554, 1091, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.