Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008286

Physical Location & Seq

Genomic Coordinates Forward (+)

18024179 .. 18027321

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTACTCAGCCTTGTTTCGTCAAAATCCCCGTTTGGTGATAGGCACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCTGTGGTTCTCTTACCGTCATAGGTGGAGAAACTATTGTTTACACATCTGTTTGTTTGGCTAATGCTCCAAGTGAACTGTCAGACTTTTTCCTCTTTCCGTTCATTATCAGGAGTGTTTTTCGGCAGCAGGTTGGACTAGTCACTATTGCAGTGGAGGCTTTTTCAAACGAGAAGGAAGGGCAAAAGATCACGAGTTATTATGTGATTGCATTACCACAAAAGAAGGCCTCAAATGTTCCACTTGGTGAGACTGTCATAGTCGAGCATTTGTCAGTTGAGGAAATAGCTGGCATAAAGGAGGCATTTCAATTGATGGATACTGACAACAAAGGCAAGGTATCTCTGGATCAGCTTCTAAATGGAATACAAGAACTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03018 map00230 map00240 map03018

Pfam Domains

Protein Families

KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

5.15

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	126 - 154	5.7e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47220
rosa_chinensis	RchiOBHm_Chr1g0315951 RchiOBHm_Chr1g0318391 RchiOBHm_Chr1g0348801 RchiOBHm_Chr5g0066701 RchiOBHm_Chr6g0274561
rosa_laevigata	RLG00000009806 RLG00000014185 RLG00000036187
rosa_multiflora	Rmu_sc0000148.1_g000004 Rmu_sc0002377.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298160 Rroxscaffold_4G00308320
rosa_rugosa	Rorug02G0166300
rosa_samantha	Rh1AG058300 Rh1AG274400 Rh1BG049400 Rh1DG110100 Rh2AG452100 Rh2CG628200 Rh3CG349600 Rh5CG576900 Rh6BG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	249, 392
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	2 cut(s)	371, 436
AluI	AGCT	2 cut(s)	371, 436
Alw26I	GTCTC	3 cut(s)	53, 70, 326
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	50, 341
BauI	CACGAG	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	53, 70, 326
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	2 cut(s)	221, 463
BfuAI	ACCTGC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	311
BsmAI	GTCTC	3 cut(s)	53, 70, 326
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	270, 430
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	438
BssMI	GATC	2 cut(s)	270, 430
BssSI	CACGAG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	3 cut(s)	100, 162, 337
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	8
BstKTI	GATC	2 cut(s)	273, 433
BstMAI	GTCTC	3 cut(s)	53, 70, 326
BstMBI	GATC	2 cut(s)	270, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	373
CviJI	RGCY	8 cut(s)	12, 83, 143, 242, 311, 371, 436, 462
CviKI_1	RGCY	8 cut(s)	12, 83, 143, 242, 311, 371, 436, 462
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	272, 432
DpnII	GATC	2 cut(s)	270, 430
DraIII	CACNNNGTG	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	311
FaiI	YATR	5 cut(s)	69, 104, 285, 341, 377
Fnu4HI	GCNGC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	221, 463
GluI	GCNGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	311
HphI	GGTGA	2 cut(s)	50, 341
Hpy166II	GTNNAC	2 cut(s)	124, 158
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	193, 274, 428
Hpy8I	GTNNAC	2 cut(s)	124, 158
HpyAV	CCTTC	3 cut(s)	250, 254, 301
HpyCH4III	ACNGT	3 cut(s)	100, 162, 337
HpyCH4V	TGCA	2 cut(s)	233, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	270, 430
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	48, 97, 178, 197, 357, 413
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	221, 463
MaeIII	GTNAC	2 cut(s)	3, 223
MalI	GATC	2 cut(s)	272, 432
MboI	GATC	2 cut(s)	270, 430
MfeI	CAATTG	1 cut(s)	392
MluCI	AATT	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	5 cut(s)	185, 232, 322, 355, 376
MunI	CAATTG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	2 cut(s)	270, 430
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	270, 430
SetI	ASST	6 cut(s)	67, 109, 216, 373, 423, 438
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	1 cut(s)	392
SseBI	AGGCCT	1 cut(s)	311
SspMI	CTAG	2 cut(s)	221, 463
StuI	AGGCCT	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	100, 162, 337
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	392
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	240
XspI	CTAG	2 cut(s)	221, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.