Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008286

Physical Location & Seq

Genomic Coordinates Reverse (-)

50223812 .. 50227047

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG274400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGCTTCGAACCGAGCAATTCAATTACGATTCGGTTTCGATATCCTGGATTATATATTTTGATTGAGACAGGTCATGTTGGGAGACAAGCCAGTGGTTGTGTTACCGTCATAGATGGAGAAACTATTGTTTATACATCTATTTGTTTGGCTGATGCTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCCGTTCATTATCAGGAGCGCTTTTCGGCAGCAGGTTGGACTAGATTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03018 map00230 map00240 map03018

Pfam Domains

Protein Families

KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

80

Amino Acids

8.84

Weight (kDa)

5.08

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	20 - 75	4.6e-07	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47220
rosa_chinensis	RchiOBHm_Chr1g0315951 RchiOBHm_Chr1g0318391 RchiOBHm_Chr1g0348801 RchiOBHm_Chr5g0066701 RchiOBHm_Chr6g0274561
rosa_laevigata	RLG00000009806 RLG00000014185 RLG00000036187
rosa_multiflora	Rmu_sc0000148.1_g000004 Rmu_sc0002377.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298160 Rroxscaffold_4G00308320
rosa_rugosa	Rorug02G0166300
rosa_samantha	Rh1AG058300 Rh1AG274400 Rh1BG049400 Rh1DG110100 Rh2AG452100 Rh2CG628200 Rh3CG349600 Rh5CG576900 Rh6BG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AfeI	AGCGCT	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	62, 79
Aor51HI	AGCGCT	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	210
AsuII	TTCGAA	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	62, 79
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	62, 79
Bsp119I	TTCGAA	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	109, 171
BstBI	TTCGAA	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	62, 79
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	210
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	3 cut(s)	6, 92, 152
CviKI_1	RGCY	3 cut(s)	6, 92, 152
Eco32I	GATATC	1 cut(s)	44
Eco47III	AGCGCT	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	44
FaeI	CATG	1 cut(s)	80
FaiI	YATR	5 cut(s)	55, 57, 78, 113, 135
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	211
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	2 cut(s)	109, 171
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	163, 205
LpnPI	CCDG	6 cut(s)	33, 57, 60, 106, 188, 207
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	103
MluCI	AATT	2 cut(s)	19, 24
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NlaIII	CATG	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
SatI	GCNGC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	2 cut(s)	76, 226
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	9
Sse9I	AATT	2 cut(s)	19, 24
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	109, 171
TaqI	TCGA	2 cut(s)	9, 40
TasI	AATT	2 cut(s)	19, 24
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	100
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.