Rh6BG000700

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008286
Physical Location & Seq
Forward (+)
130150 .. 149150
19001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG000700.1

Sequence Viewer

Length: 363 bp
ATGCTTCTTCTTTCGGTCGAACTGTCGCAGAATCGCAAGGCATTTGGCATCAGAGCTTTGACCGACGCCGGGGCTGCTGCGGCGGTTGATGTTACTCAGCCTTATTCCGTCAAAATCCCCGTTGGTGATAGGCACATTTTGATTGAGACAGGTCATATTGGGAGACAAGCCAGTGGTTCTCTTACCGTCATAGATGGAGAAACTATTGTTTACACATCTGTTTGTTTGGCTGATGCTCCAAGTGAACCGTCAAACTTTTTCCTTCTTTCCGTTCATTATCAGGAGTGTTTTTCGGCAGCAGGTTGGACTAGCAATCCGATGAAGAATATGGCCGGAGGTTGCAGGAATTTCAGGCCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

120

Amino Acids

12.84

Weight (kDa)

6.25

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 44 - 101 3.1e-06 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
AciI CCGC 2 cut(s) 80, 83
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 140, 157
AoxI GGCC 2 cut(s) 330, 353
ApeKI GCWGC 3 cut(s) 74, 77, 296
ApoI RAATTY 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 137
BbvI GCAGC 3 cut(s) 61, 64, 308
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 140, 157
BfaI CTAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 75, 78, 81, 297
BlsI GCNGC 4 cut(s) 76, 79, 82, 298
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 57, 223
BpuMI CCSGG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 3 cut(s) 61, 64, 308
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 332, 355
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 2 cut(s) 69, 333
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 140, 157
BsnI GGCC 2 cut(s) 332, 355
BspACI CCGC 2 cut(s) 80, 83
BspANI GGCC 2 cut(s) 332, 355
BspCNI CTCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 3 cut(s) 24, 187, 249
BstACI GRCGYC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 96
BstMAI GTCTC 2 cut(s) 140, 157
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 74, 80
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 61, 64, 308
BsuRI GGCC 2 cut(s) 332, 355
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 290
CseI GACGC 1 cut(s) 74
CviJI RGCY 7 cut(s) 56, 74, 100, 170, 230, 332, 355
CviKI_1 RGCY 7 cut(s) 56, 74, 100, 170, 230, 332, 355
DdeI CTNAG 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 330
FaiI YATR 3 cut(s) 156, 191, 329
Fnu4HI GCNGC 4 cut(s) 75, 78, 81, 297
Fsp4HI GCNGC 4 cut(s) 75, 78, 81, 297
FspBI CTAG 1 cut(s) 309
GluI GCNGC 4 cut(s) 75, 78, 81, 297
HaeIII GGCC 2 cut(s) 332, 355
HapII CCGG 2 cut(s) 69, 333
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
HinfI GANTC 1 cut(s) 31
HpaII CCGG 2 cut(s) 69, 333
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 211, 245
Hpy188I TCNGA 2 cut(s) 53, 318
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 2 cut(s) 211, 245
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 24, 187, 249
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 80
HpyF3I CTNAG 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 82, 135, 184, 266, 285, 328, 337, 346
Lsp1109I GCAGC 3 cut(s) 61, 64, 308
LweI GCATC 2 cut(s) 57, 223
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 1 cut(s) 334
MluCI AATT 2 cut(s) 346, 358
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 1 cut(s) 329
MseI TTAA 1 cut(s) 361
MspI CCGG 2 cut(s) 69, 333
MspR9I CCNGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 74, 80
NciI CCSGG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 4 cut(s) 76, 79, 82, 298
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 4 cut(s) 75, 78, 81, 297
ScrFI CCNGG 1 cut(s) 70
SetI ASST 4 cut(s) 58, 154, 304, 340
SfaNI GCATC 2 cut(s) 57, 223
Sse9I AATT 2 cut(s) 346, 358
SsiI CCGC 2 cut(s) 80, 83
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 3 cut(s) 24, 187, 249
TaqI TCGA 1 cut(s) 18
TaqII GACCGA 2 cut(s) 4, 77
TasI AATT 2 cut(s) 346, 358
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 1 cut(s) 178
TseI GCWGC 3 cut(s) 74, 77, 296
TspDTI ATGAA 2 cut(s) 263, 335
TspGWI ACGGA 2 cut(s) 97, 259
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 346
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.