Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008286

Physical Location & Seq

Genomic Coordinates Reverse (-)

77210845 .. 77211473

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTTGATCCTGACCCCAAGAAGCGGTTGACAGCTCAAGAAATCATCCTTGGACACAAAATGGCAAGAAGGCCCCAAATGCTCCACTTAGTGAGACTGAGACAAAGGCTGAAACAATTTTCTGTAATGAACAATCTGAAAAAAAAAAAGAGCTCTTGGGTATCTTATATGCACGTCATAGCCCAGCATTTGTCAGTTGAGGAAGTGGCTGGCATAAAGGAGGCATTTCAACTTATGGATACTGACAATAAAGGCAAGGTATCCCTCGATCAGCTTCAAAATGGAATACAAAAACTCGGCCAGCAAATTCCTGACCCGGATCTACAAATACTAATGGAAGCTATAAGCATCAATTTGTGCTTCATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

9.67

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	72 - 100	9.7e-07	EF-hand domain
EF-hand_1	PF00036	72 - 99	4.9e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47220
rosa_chinensis	RchiOBHm_Chr1g0315951 RchiOBHm_Chr1g0318391 RchiOBHm_Chr1g0348801 RchiOBHm_Chr5g0066701 RchiOBHm_Chr6g0274561
rosa_laevigata	RLG00000009806 RLG00000014185 RLG00000036187
rosa_multiflora	Rmu_sc0000148.1_g000004 Rmu_sc0002377.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298160 Rroxscaffold_4G00308320
rosa_rugosa	Rorug02G0166300
rosa_samantha	Rh1AG058300 Rh1AG274400 Rh1BG049400 Rh1DG110100 Rh2AG452100 Rh2CG628200 Rh3CG349600 Rh5CG576900 Rh6BG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	2, 327
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	230, 278
AjiI	CACGTC	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	35, 153, 274, 341
AluI	AGCT	4 cut(s)	35, 153, 274, 341
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	88, 94
AlwI	GGATC	2 cut(s)	2, 327
AoxI	GGCC	2 cut(s)	71, 298
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	155
BciVI	GTATCC	2 cut(s)	232, 271
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	88, 94
BfuI	GTATCC	2 cut(s)	232, 271
Bme1390I	CCNGG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	2 cut(s)	73, 300
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	88, 94
BsnI	GGCC	2 cut(s)	73, 300
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	7, 268, 319
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	73, 300
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	2, 327
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	7, 268, 319
BssT1I	CCWWGG	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	211, 302
BstDEI	CTNAG	2 cut(s)	88, 98
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	10, 271, 322
BstMAI	GTCTC	2 cut(s)	88, 94
BstMBI	GATC	3 cut(s)	7, 268, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuI	GTATCC	2 cut(s)	232, 271
BsuRI	GGCC	2 cut(s)	73, 300
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	211, 302
Cfr13I	GGNCC	1 cut(s)	72
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	35, 73, 109, 153, 182, 209, 274, 300, 341
CviKI_1	RGCY	9 cut(s)	35, 73, 109, 153, 182, 209, 274, 300, 341
DdeI	CTNAG	2 cut(s)	88, 98
DpnI	GATC	3 cut(s)	9, 270, 321
DpnII	GATC	3 cut(s)	7, 268, 319
DraIII	CACNNNGTG	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	367
FaiI	YATR	8 cut(s)	168, 170, 179, 215, 236, 344, 365, 370
FatI	CATG	1 cut(s)	363
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	73, 300
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	3 cut(s)	11, 38, 311
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	88, 98
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	7, 268, 319
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	24, 195, 197, 314, 324, 330
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	174
MalI	GATC	3 cut(s)	9, 270, 321
MboI	GATC	3 cut(s)	7, 268, 319
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	3 cut(s)	116, 306, 352
MnlI	CCTC	3 cut(s)	193, 214, 275
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	7, 268, 319
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	74
NmeAIII	GCCGAG	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	155
Sau3AI	GATC	3 cut(s)	7, 268, 319
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	6 cut(s)	37, 155, 177, 261, 276, 343
SfaNI	GCATC	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	116, 306, 352
SsiI	CCGC	1 cut(s)	25
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	116, 306, 352
TspDTI	ATGAA	2 cut(s)	143, 352
XapI	RAATTY	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.