RchiOBHm_Chr6g0274561

polyribonucleotide nucleotidyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
36033257 .. 36037640
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24631

Sequence Viewer

Length: 360 bp
ATGTTACTCATCCTTATTTGGTCAAAATCCCCGTTGGTGATTATGCACGTGAGTCATATTGGGAGACAAGCCAGTGGTTCTCTTATCGTCATAGATGGAGAAACTATTTTTTACACATCTGTTTGTTTGGCTGATGCTCCAAGTGAACTGTCAGACTTTTTCCCTCTTTCCTTTCATTATCAGGACTGTTTTTCGGCAGCAGGTTGGACTAGTGGAGGCTTTTTCAAACGAGAAGGAAGGGCAAAAGATCACAAGGTCATAGTCGAGCATTTGTCAGTTGAGGAAATAGCTGGCATAAAGGAGGCATTTCAATTGATGGATACTAACAACAAAGGCAAGGTATCCCTGGATCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

5.64

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 357
AcvI CACGTG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 226, 311
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 290, 355
AluI AGCT 2 cut(s) 290, 355
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 49
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 89, 310
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 2 cut(s) 313, 352
BcoDI GTCTC 1 cut(s) 58
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 191
BfuI GTATCC 2 cut(s) 313, 352
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 247, 349
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 247, 349
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 150, 188
BstBAI YACGTR 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 2 cut(s) 250, 352
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 247, 349
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 209
BsuI GTATCC 2 cut(s) 313, 352
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 292
CviJI RGCY 5 cut(s) 71, 131, 219, 290, 355
CviKI_1 RGCY 5 cut(s) 71, 131, 219, 290, 355
DpnI GATC 2 cut(s) 249, 351
DpnII GATC 2 cut(s) 247, 349
Eco72I CACGTG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 345
FaiI YATR 5 cut(s) 44, 57, 92, 260, 296
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 210
GluI GCNGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 52
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 227, 231
HpyCH4III ACNGT 2 cut(s) 150, 188
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 48
Kzo9I GATC 2 cut(s) 247, 349
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 85, 167, 186, 276, 332
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 249, 351
MboI GATC 2 cut(s) 247, 349
MfeI CAATTG 1 cut(s) 311
MluCI AATT 1 cut(s) 311
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 4 cut(s) 174, 209, 274, 295
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 347
NdeII GATC 2 cut(s) 247, 349
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 60
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
PpsI GAGTC 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 345
PspCI CACGTG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 345
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 247, 349
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 347
SetI ASST 6 cut(s) 51, 205, 258, 292, 342, 357
SfaNI GCATC 1 cut(s) 124
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 1 cut(s) 311
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 150, 188
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 311
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 79
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.