Rh1AG058300

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008286
Physical Location & Seq
Reverse (-)
9534363 .. 9540327
5965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG058300.1

Sequence Viewer

Length: 645 bp
ATGGGCTTCGAGCTGAGCAAATTACGATTCTGTTTCGATATCCTGGATTATAGTTTGTCCCTCCTCCTTCCCAGAAAGAATCGCAAGGCATTTGGTATCAGAGCTTTGACGGACGCCGGAGCTGCTGCAGCGGTTGATGTTACTCAGCCTTATTCTGTCAAAACCCCCGTTGGTGATAGGCACATTTTGATTGAGACAGGTCAAATTGGGAGACAAGCCAGTGGTTCTCTTACCGTCATAGATGGAGAAACTATTGTTTACACATCTGTTTGTTTGGCTGATGCTCCAAGTGAACCGTCAGACTTTTTCCCTCTTTCCGTTCATTATCAAGAGTGTTTTTCGGCAGCAGGTTGGACTAGTGGAGGCTTTTTCAAACGAGAAGGAAGGGAAAAAGATCACGAGACTATAGTAGCTGAAGGAAAGCTCAGTCTCAATAGAAGTCAAGGAATTAACTTTGGTAAAGATTGGTTCCCCTTGGGAATACGTGTGCATGTAGCTTCCAGGAAGATAAAAACCCATCACAGGCGAACACAAACAGAACCAAAACCAGCATTGCCCATTGGATCGCGGGCATTCTCAATTTCGATACAGCCATCCGAATCGAAACAAGAAGAACACCTACCACTGTATCTAACCTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

214

Amino Acids

23.7

Weight (kDa)

8.75

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 60 - 138 1.1e-08 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
AccII CGCG 1 cut(s) 568
AciI CCGC 2 cut(s) 131, 568
AclWI GGATC 1 cut(s) 571
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 522
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 1 cut(s) 373
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 2 cut(s) 42, 500
AluBI AGCT 6 cut(s) 13, 104, 122, 413, 424, 497
AluI AGCT 6 cut(s) 13, 104, 122, 413, 424, 497
Alw26I GTCTC 4 cut(s) 188, 205, 395, 434
AlwI GGATC 1 cut(s) 571
ApeKI GCWGC 4 cut(s) 122, 125, 128, 344
AsuHPI GGTGA 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 611, 644
BarI GAAGNNNNNNTAC 2 cut(s) 603, 635
BauI CACGAG 1 cut(s) 398
BbvI GCAGC 4 cut(s) 109, 112, 140, 356
BccI CCATC 3 cut(s) 236, 525, 601
BciT130I CCWGG 2 cut(s) 44, 502
BcoDI GTCTC 4 cut(s) 188, 205, 395, 434
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 2 cut(s) 126, 405
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 4 cut(s) 123, 126, 129, 345
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 4 cut(s) 124, 127, 130, 346
Bme1390I CCNGG 2 cut(s) 44, 502
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 2 cut(s) 44, 502
BmsI GCATC 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 474
Bsc4I CCNNNNNNNGG 1 cut(s) 522
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 551
BseBI CCWGG 2 cut(s) 44, 502
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 593
BseLI CCNNNNNNNGG 1 cut(s) 522
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 3 cut(s) 5, 158, 439
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 4 cut(s) 109, 112, 140, 356
Bsh1236I CGCG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 522
BsmAI GTCTC 4 cut(s) 188, 205, 395, 434
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 572
Bsp143I GATC 2 cut(s) 394, 563
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 2 cut(s) 131, 568
BspCNI CTCAG 3 cut(s) 6, 157, 438
BspFNI CGCG 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 2 cut(s) 394, 563
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 44, 502
Bst4CI ACNGT 3 cut(s) 235, 297, 627
BstACI GRCGYC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 14, 144, 425
BstF5I GGATG 1 cut(s) 593
BstFNI CGCG 1 cut(s) 568
BstKTI GATC 2 cut(s) 397, 566
BstMAI GTCTC 4 cut(s) 188, 205, 395, 434
BstMBI GATC 2 cut(s) 394, 563
BstMWI GCNNNNNNNGC 2 cut(s) 122, 128
BstNI CCWGG 2 cut(s) 44, 502
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 42, 500
BstSFI CTRYAG 2 cut(s) 126, 405
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 109, 112, 140, 356
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 226, 623
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 570
CseI GACGC 1 cut(s) 122
CviAII CATG 1 cut(s) 491
DdeI CTNAG 3 cut(s) 14, 144, 425
DpnI GATC 2 cut(s) 396, 565
DpnII GATC 2 cut(s) 394, 563
Eco130I CCWWGG 1 cut(s) 474
Eco32I GATATC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 42, 500
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 1 cut(s) 494
FaiI YATR 4 cut(s) 51, 239, 407, 492
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 490
FauI CCCGC 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 123, 126, 129, 345
FokI GGATG 1 cut(s) 580
Fsp4HI GCNGC 4 cut(s) 123, 126, 129, 345
FspBI CTAG 1 cut(s) 357
GluI GCNGC 4 cut(s) 123, 126, 129, 345
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 494
HinfI GANTC 3 cut(s) 27, 79, 599
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 259, 293
Hpy188I TCNGA 3 cut(s) 101, 301, 598
Hpy188III TCNNGA 3 cut(s) 329, 398, 642
Hpy8I GTNNAC 2 cut(s) 259, 293
HpyAV CCTTC 4 cut(s) 77, 374, 378, 410
HpyCH4III ACNGT 3 cut(s) 235, 297, 627
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 2 cut(s) 128, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 128
HpyF3I CTNAG 3 cut(s) 14, 144, 425
HpySE526I ACGT 1 cut(s) 484
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 494
Kzo9I GATC 2 cut(s) 394, 563
LmnI GCTCC 2 cut(s) 119, 289
Lsp1109I GCAGC 4 cut(s) 109, 112, 140, 356
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 396, 565
MboI GATC 2 cut(s) 394, 563
MboII GAAGA 2 cut(s) 517, 623
MluCI AATT 4 cut(s) 20, 204, 447, 579
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 71, 74, 321, 356
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 44, 502
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 2 cut(s) 44, 502
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 122, 128
NdeII GATC 2 cut(s) 394, 563
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 470
NspI RCATGY 1 cut(s) 494
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 3 cut(s) 27, 79, 599
PfoI TCCNGGA 2 cut(s) 42, 500
PkrI GCNGC 4 cut(s) 124, 127, 130, 346
Ppu21I YACGTR 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 42, 500
PspGI CCWGG 2 cut(s) 42, 500
PspN4I GGNNCC 1 cut(s) 470
PstI CTGCAG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 4 cut(s) 123, 126, 129, 345
Sau3AI GATC 2 cut(s) 394, 563
ScrFI CCNGG 2 cut(s) 44, 502
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 2 cut(s) 126, 405
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 4 cut(s) 20, 204, 447, 579
SsiI CCGC 2 cut(s) 131, 568
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 42, 500
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 235, 297, 627
TaiI ACGT 1 cut(s) 487
TaqI TCGA 4 cut(s) 9, 36, 584, 602
TasI AATT 4 cut(s) 20, 204, 447, 579
TfiI GAWTC 3 cut(s) 27, 79, 599
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 226, 630
TseI GCWGC 4 cut(s) 122, 125, 128, 344
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 2 cut(s) 125, 307
TspRI CASTG 2 cut(s) 226, 630
XceI RCATGY 1 cut(s) 494
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.