Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

19398184 .. 19399097

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47245.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAACTTCAACATATCTTCATTTCAACGATTTTGTTTAATAATCTAAATATACGATTACGTATTTTCACTATTTCGGAAATATGCAATATATATGTTCAATCATCCTTCAAAGGAAAACATAAGAGAGAAAGAGAAAATGAAGTGTTTTTGTCGTCTGCAGGTCCGGTGTACCGGAATCTTTTGTCGGAGAAAGGTTTTCCTCCTCGAGATTCTGATATCATCACTACTTGGGACATTTTCAGTAAATCTGTGGAAAAATTTCCTGATAACAAGATGCTTGGATGGCGTCAAATTGTGGATGAGAAGGTTGGACCGTATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTCTCTTGATCGGCTCAGCGCTACGAGCTGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

130

Amino Acids

15.25

Weight (kDa)

9.01

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	2 cut(s)	173, 335
AfeI	AGCGCT	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	11, 27, 101, 112
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	2 cut(s)	261, 354
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	164, 314
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	164, 314
BccI	CCATC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	152
BlpI	GCTNAGC	1 cut(s)	370
Bme18I	GGWCC	2 cut(s)	164, 314
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	164, 314
BmsI	GCATC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	289
BsaWI	WCCGGW	2 cut(s)	166, 174
BseGI	GGATG	3 cut(s)	104, 290, 307
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	167, 175
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	363
Bsp1720I	GCTNAGC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	152
BssMI	GATC	1 cut(s)	363
BssNAI	GTATAC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	104, 290, 307
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 380
BstSFI	CTRYAG	1 cut(s)	159
BstSNI	TACGTA	1 cut(s)	62
BstZ17I	GTATAC	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	104, 290, 307
BveI	ACCTGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	164, 314
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	172, 334
CviJI	RGCY	2 cut(s)	369, 383
CviKI_1	RGCY	2 cut(s)	369, 383
CviQI	GTAC	2 cut(s)	172, 334
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eco105I	TACGTA	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	164, 314
Eco47III	AGCGCT	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	220
FaqI	GGGAC	1 cut(s)	248
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	3 cut(s)	91, 297, 314
GlaI	GCGC	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	377
HapII	CCGG	2 cut(s)	167, 175
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	178, 212
HpaII	CCGG	2 cut(s)	167, 175
Hpy166II	GTNNAC	2 cut(s)	172, 346
Hpy188I	TCNGA	3 cut(s)	79, 190, 217
Hpy188III	TCNNGA	3 cut(s)	209, 266, 361
Hpy8I	GTNNAC	2 cut(s)	172, 346
HpyAV	CCTTC	2 cut(s)	118, 301
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	2 cut(s)	61, 332
HpyCH4V	TGCA	2 cut(s)	87, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 380
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	61, 332
Hsp92I	GRCGYC	1 cut(s)	289
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	363
LpnPI	CCDG	5 cut(s)	147, 180, 188, 279, 369
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	2 cut(s)	61, 332
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	10, 362
MluCI	AATT	2 cut(s)	260, 294
MmeI	TCCRAC	2 cut(s)	168, 292
MnlI	CCTC	2 cut(s)	213, 216
MroXI	GAANNNNTTC	2 cut(s)	261, 354
MseI	TTAA	1 cut(s)	39
MspI	CCGG	2 cut(s)	167, 175
MwoI	GCNNNNNNNGC	2 cut(s)	286, 380
NdeII	GATC	1 cut(s)	363
PaeR7I	CTCGAG	1 cut(s)	207
PdmI	GAANNNNTTC	2 cut(s)	261, 354
PfeI	GAWTC	2 cut(s)	178, 212
Ppu21I	YACGTR	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	164, 314
PstI	CTGCAG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	173, 335
RsaNI	GTAC	2 cut(s)	172, 334
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	164, 314
SetI	ASST	6 cut(s)	64, 166, 199, 312, 335, 385
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	164, 314
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SnaBI	TACGTA	1 cut(s)	62
Sse9I	AATT	2 cut(s)	260, 294
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	2 cut(s)	64, 335
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	260, 294
TfiI	GAWTC	2 cut(s)	178, 212
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TspDTI	ATGAA	3 cut(s)	10, 17, 156
VpaK11BI	GGWCC	2 cut(s)	164, 314
XapI	RAATTY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	261, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.