Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

21250030 .. 21251867

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATCCCTAAGATGCGCCACGTCATAGCAGTGTGGAAGGGTGACCAACATCTTTGTGCCCACAAGTACTGCATAAGTGAAGCGAGGTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTACCCACCGTATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCAGCTCCTGAGCAGCAGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTGATTACACTATGACCTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTCTCCTTAGGGTCAGTGGAATTAGATTTTTTCCTGTGACACCGGGTCAACTTTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGCTAGCAATTGATTCAAGTAGGCTCTTCGCACAAGCTCTGTATGTTGTTTGTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

150

Amino Acids

17.15

Weight (kDa)

8.97

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	68, 280
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	107, 200, 408
AhdI	GACNNNNNGTC	1 cut(s)	345
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	4 cut(s)	72, 104, 285, 317
AluBI	AGCT	5 cut(s)	142, 176, 251, 382, 428
AluI	AGCT	5 cut(s)	142, 176, 251, 382, 428
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	184, 187
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	196, 199
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	185, 188
BlsI	GCNGC	2 cut(s)	186, 189
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	345, 363
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	345, 363
BmsI	GCATC	1 cut(s)	3
BmtI	GCTAGC	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	196, 199
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	3, 163
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	422
BssMI	GATC	2 cut(s)	3, 163
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	132, 278
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	384, 396
BstDEI	CTNAG	3 cut(s)	9, 180, 308
BstEII	GGTNACC	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	2 cut(s)	6, 166
BstMBI	GATC	2 cut(s)	3, 163
BstNI	CCWGG	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	343, 361
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	196, 199
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	290
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 322
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	384, 396
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	67, 279
CviJI	RGCY	9 cut(s)	113, 142, 176, 190, 251, 290, 382, 415, 428
CviKI_1	RGCY	9 cut(s)	113, 142, 176, 190, 251, 290, 382, 415, 428
CviQI	GTAC	2 cut(s)	67, 279
DdeI	CTNAG	3 cut(s)	9, 180, 308
DpnI	GATC	2 cut(s)	5, 165
DpnII	GATC	2 cut(s)	3, 163
DriI	GACNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	422
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	361
FaiI	YATR	9 cut(s)	26, 74, 138, 145, 208, 219, 236, 435, 451
FaqI	GGGAC	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	185, 188
Fsp4HI	GCNGC	2 cut(s)	185, 188
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	185, 188
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	274, 350
HindII	GTYRAC	2 cut(s)	274, 350
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	3 cut(s)	301, 376, 404
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	274, 350
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	274, 350
HpyAV	CCTTC	2 cut(s)	31, 194
HpyCH4III	ACNGT	2 cut(s)	132, 278
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	72, 160, 386
HpyF3I	CTNAG	3 cut(s)	9, 180, 308
HpySE526I	ACGT	1 cut(s)	21
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	3, 163
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	7 cut(s)	192, 247, 253, 348, 348, 357, 375
Lsp1109I	GCAGC	2 cut(s)	196, 199
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	41, 337
MalI	GATC	2 cut(s)	5, 165
MboI	GATC	2 cut(s)	3, 163
MboII	GAAGA	2 cut(s)	268, 409
MfeI	CAATTG	2 cut(s)	195, 399
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	195, 321, 399
MnlI	CCTC	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	29, 54
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	345, 363
MunI	CAATTG	2 cut(s)	195, 399
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	363
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	3, 163
NheI	GCTAGC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	41, 337
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	301, 376, 404
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	186, 189
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	68, 280
RsaNI	GTAC	2 cut(s)	67, 279
RseI	CAYNNNNRTG	2 cut(s)	29, 54
SapI	GCTCTTC	1 cut(s)	422
SatI	GCNGC	2 cut(s)	185, 188
Sau3AI	GATC	2 cut(s)	3, 163
Sau96I	GGNCC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	345, 363
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	3
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	29, 54
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	195, 321, 399
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	343, 361
TaaI	ACNGT	2 cut(s)	132, 278
TaiI	ACGT	1 cut(s)	24
TasI	AATT	3 cut(s)	195, 321, 399
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	301, 376, 404
TscAI	CASTG	2 cut(s)	36, 322
TseFI	GTSAC	2 cut(s)	41, 337
TseI	GCWGC	2 cut(s)	184, 187
Tsp45I	GTSAC	2 cut(s)	41, 337
TspRI	CASTG	2 cut(s)	36, 322
XspI	CTAG	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.