Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

21234390 .. 21238251

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3705 bp

ATGCCAACTCTGTTGCTCCATTTCTTCCTTTTCTTAATCACTACCACTGTTACTAACCTCATCCCCGCAGTTCACAGCAACTGTATTGAAGCCCAGCAACAATCATTGCTCCATTTCAAACAAAGTCTTGAATTTGATTCTTCCGAATCCTCCAAGCTTATCACATGGAATTCGAGTACCGACTGCTGTTCTTGGCTCGGTGTAACTTGCAGCACCAATGGGAGTGTTGTCGGACTTGACATCAGCAGCGAGTCTATCTCATGCAGCATTGACAATTCAAGCAGTCTCTTTCAACTTCAACATCTTCAGAGCCTCAATTTGGCCTATAACTACTTCAATCGCTCTGCAATTCCATCTGCAATTGGAAAGCTTGCAAAGCTGAGGTATCTGAATTTAAGTGATGCTTCTTTTTCTGGGGTTATTCCCATTGAGATTTCACGCTTAACAACGCTGATAACTCTTGATCTCTCTGGAAATGGCTACCACCCGAATTTAAGCATGCTAATTCAGAACCTCACAGAGCTTACAGAGTTAAATCTTGATTCGGTAGGGATGCCAGGACAGGGGAGTGACTGGTGCGAAGCCATATCATCTTCACTGCCAAATCTGAGGGTGTTGAGCTTGTCTGGTTGTGCTCTTTCAGGCCCTATTTGTGAGTCCCTTGCAAAGCTTCAATCTCTGTATGAGATTGACCTGTCATATAACTCCTTCTATGCTCCGGTTCCAAGAGTCTTTGCCAATTTTTCAAACTTGACTTACTTGAGTCTTTGTAGTTCTAACTTGATCGGAACATTTCCTAAAGAGATCTTTCATATACCTTCCCTACAAACCATTGACCTTTCCTTCAATTTTGATCTTCATGGTTCCTTTCCAGAATTTCCAAACTATGGGTCTCTTCGATCCTTAATTGTATGTTGGACAAGTTTTTCAGGTGACCTACCCAACTCTATTGGAAATCTTAAGATGTTGTCAAGCATAGATATTTCAAATTGCAATTTCACTGGATCAGTTCCCAAGTCGATTGAAAACCTCACACTATTGGCTGACCTGGACATGTCAAGGAACAGATTTAATAGTCCCATTAGTTCTGTTAACTGGGCAACCCTTGTTAATCTGGAAACCCTCGATTTGAGCAACAATCAACTCTATGGGACTATTCCTTCATCTGTTGTTTCTCTTCCCAGACTCGAAACATTAACACTATCCCATAATCGGTTCTCAGGTCAAGTCCCTGAATTTTCTAATACCTCTTCCGCCTTACTTGACACCCTTGATTGGGAAAACAACAATTTGGACGGACAAATACCAACATCTATCTTCAATCTTCAAGGGCTTCTGTTTCTCAAACTTTCTTCAAACAACTTCAGTGGCTTCCCTTTTAATGGTCCACAGCTGCCCAGAAATCTTTCATCGGTTGATCTTTCCAACAATAGCATGTTGTTTCATTACAATGGCACCAATTCCTCCTTCCTTCAGATTCGCCGTTTGGTATTGGCTTCTAACAAGTTGAGAGCATTCCCAGAGTTCTTGAGAAATCAGTCCATATTATACCACTTGGACCTTTCAAACAACCAGATTCAAGGCATGATACCTAATTGGATTTTGAGTCTCAAAACTCTTAATTCCCTTGATCTTTCTGGCAACTCCTTGGCAAGTCTTGAAGCTCCTCTTCCTAATTCCACTTCTTCTTTATCTTCTCTGGACCTTCATTCCAACAAGCTTCAAGGTGAGGTACCTAATTGGATTTTCAGTCTCAAATCTCTCAATTCCCTTGATCTTTCTGGCAACTCCTTGGCAAGTCTTGAAGCTCCTCTTCCTAATTCCACTTCTGCTTTATCTTCTCTGGACCTTCATTCCAACAAGCTTCAAGGCGAGATACCTAATTGGATTTTGAGTCTCGAATCTCTTAATTCCCTTGATCTTTCTGGCAACTCCTTAGTGACTCTAGAAGCTCCTCTGCCTAATTCAACTTCTACTTTATCTTCTCTGGACCTTCACTCCAACAAGCTTCAAGGTATCCATTCCTCATATTCCTTCCTTCAGCTTCGCTCCTTGTCATTAGCTTCTAACAAGTTGACAACATTCCCATACTTCTTGAGAAATCAATCCCATTTAACCAACTTGGACCTCTCGGACAACCAGATTCAAGGACAGATACCCAATTGGATTTGGATTTTTGATTCTCTTCAAGAACTAAATCTTTCTTGTAACTCCTTGGAAAGTTTAGAAGCTCCTCTACTTAATTCTAGCTATGTTCTGCCATCGATTGATCTTCATTCCAACCAGCTTCAGGGACATTTCCCCTTGTTCTTAAGTAGTAGTTATCTAGATTATTCTAGAAATAATTTCAGCTCTAGTATACCGACTGACATTGGTGACTTCATTTCTAGTTGGTCTTACCTTTCTCTTTCAAGCAATAACTTTCACGGAGCCATTCCAAAATCAATATGCAATGCAAGTGGTGTGGTTCTTGATCTGTCCAATAATTCCTTGAGTGGAAACATTCCCCAATGCTTGACTCAATCACTTTCACATGCGGTCATTGATTTGAGAAGAAACAACCTGAGTGGCACAATTCCTGATAATTTTCTCAAGGGTTGCAATCTACAAACTCTAGACCTCAGTAACAATCAGATACAAGGCAAGTTTCCAAAATCTCTTGTCAACTGCTCAGAGTTAGAGGTTTCAAACATTGGAAACAATAACATAGCTGATACTTTTCCATGCTTTTTAATGAGCTTAACCACATTGCGTGTCCTTGTTTTGCGGACCAACAAGTTTTATGGAAGCATTGGATGTCCCAAGACCAATGGCACATGGCCTGTGCTTCAAATAATAGATTTAGCTCACAACAATTTCAGTGGTGATATGCCAGGAAGATTGTCTCTAACATGGCAGGCTATGGTGTCTAATAAGGATGATTCTCCAACTAACCTTGGATTTTCTTCTAGATTTTCTTCTAATCGCCGGTGCATGAATAATCCAACTAGTAGAGGATGTTATTCGTATGATGGAGAAACTTATATTGACTTTTATTATAGAGATACAATTACAACTATCATCAAAGGTTTAGAATTGGATGTGGTTAAGATTTTAACTATATTCACCTTGATTGACTACTCCTCCAACAAGTTCAACGGATCAATACCTGAGGAAATTGGAGAGTTGAAATCACTACATGTTCTCAACTTATCCGGTAATGCTTTCACCGGAAAAATCCCATCATCATTTGGTAAGATGCGGCAATTGGAGTCCTTAGATCTCTCAAAGAACCACTTGAGCGGCCAAATTCCCCCCGAGTTTGCAAATCTCAATTTCCTTTCGCACTTGAATGTCTCATATAATCAATTGACGGGAAGGATCCCAACCAACACTCAGTTTTCCACATTTCCAAGTACCTCCTTTGAGGGTAATAAAGGATTATGGGGGCCTCCTCTGACATCGGATGTAGTATTGCCGCCACCAATTTTAAATGGAAGCTCAAGTGATCCGAATTCTGGAGATGAGATTGATTGGGATGTTATCTGTGTTGAAATTGGATTTACATGTGGGTTTGGAATTGTCATTGGGTCACTTTTGTTTTGCAAAAGATGGAGGAAATGGTATTACAGAGCTATGTGTAGTTTTCTTTTCAAGATATTCCCTCAGTTGGAGCAGAGATTTGGTAATCATAGAAGACACATGTACGTAAACATAAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

1234

Amino Acids

136.34

Weight (kDa)

5.59

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 71	1.1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	86 - 233	9.8e-12	Leucine-rich repeat region
LRR_8	PF13855	226 - 283	3e-07	Leucine rich repeat
LRR_8	PF13855	368 - 406	3.6e-06	Leucine rich repeat
LRR_4	PF12799	371 - 412	1.4e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	493 - 550	6.9e-07	Leucine rich repeat
LRR_8	PF13855	539 - 598	4e-08	Leucine rich repeat
LRR_8	PF13855	588 - 646	1.2e-06	Leucine rich repeat
LRR_8	PF13855	659 - 715	4.6e-06	Leucine rich repeat
LRR_14	PF23598	1048 - 1112	2.3e-07	Leucine-rich repeat region
LRR_8	PF13855	1058 - 1117	2.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1732
AccB1I	GGYRCC	2 cut(s)	1454, 1732
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccBSI	CCGCTC	1 cut(s)	3282
AccI	GTMKAC	1 cut(s)	2359
AciI	CCGC	7 cut(s)	66, 1254, 2537, 2767, 3241, 3282, 3458
AclWI	GGATC	6 cut(s)	894, 1012, 3148, 3355, 3368, 3482
AcoI	YGGCCR	1 cut(s)	3283
AcsI	RAATTY	8 cut(s)	131, 169, 391, 490, 875, 1235, 3288, 3493
AcuI	CTGAAG	5 cut(s)	290, 1348, 1457, 2024, 2273
AfaI	GTAC	4 cut(s)	178, 1734, 3397, 3686
AflII	CTTAAG	2 cut(s)	959, 2311
AflIII	ACRYGT	4 cut(s)	1053, 3178, 3545, 3681
AhlI	ACTAGT	1 cut(s)	2987
AjnI	CCWGG	3 cut(s)	556, 1047, 2872
AjuI	GAANNNNNNNTTGG	2 cut(s)	1451, 1483
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	7 cut(s)	290, 897, 1613, 1757, 1901, 2889, 3340
AlwI	GGATC	6 cut(s)	894, 1012, 3148, 3355, 3368, 3482
AlwNI	CAGNNNCTG	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	3296
AoxI	GGCC	5 cut(s)	321, 643, 2819, 3283, 3428
ApeKI	GCWGC	4 cut(s)	210, 246, 264, 1393
ApoI	RAATTY	8 cut(s)	131, 169, 391, 490, 875, 1235, 3288, 3493
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
Asp700I	GAANNNNTTC	1 cut(s)	1405
Asp718I	GGTACC	1 cut(s)	1732
AspS9I	GGNCC	9 cut(s)	644, 1385, 1558, 1702, 1846, 1990, 2125, 2769, 3428
AsuHPI	GGTGA	6 cut(s)	944, 1739, 2387, 2876, 3097, 3199
AvaI	CYCGRG	1 cut(s)	3296
AvaII	GGWCC	7 cut(s)	1385, 1558, 1702, 1846, 1990, 2125, 2769
AxyI	CCTNAGG	1 cut(s)	3150
BamHI	GGATCC	1 cut(s)	3360
BanI	GGYRCC	2 cut(s)	1454, 1732
BarI	GAAGNNNNNNTAC	2 cut(s)	2220, 2252
BbsI	GAAGAC	1 cut(s)	3682
Bbv12I	GWGCWC	1 cut(s)	637
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	4 cut(s)	222, 258, 276, 1380
BccI	CCATC	5 cut(s)	361, 2269, 3005, 3229, 3585
BceAI	ACGGC	1 cut(s)	1467
BciT130I	CCWGG	3 cut(s)	558, 1049, 2874
BciVI	GTATCC	1 cut(s)	2027
BcoDI	GTCTC	7 cut(s)	290, 897, 1613, 1757, 1901, 2889, 3340
BcuI	ACTAGT	1 cut(s)	2987
BfaI	CTAG	9 cut(s)	1946, 2247, 2327, 2337, 2355, 2388, 2615, 2949, 2988
BfrI	CTTAAG	2 cut(s)	959, 2311
BfuI	GTATCC	1 cut(s)	2027
BglII	AGATCT	2 cut(s)	804, 3259
BisI	GCNGC	7 cut(s)	211, 247, 265, 1394, 3242, 3283, 3458
BlsI	GCNGC	7 cut(s)	212, 248, 266, 1395, 3243, 3284, 3459
Bme1390I	CCNGG	3 cut(s)	558, 1049, 2874
Bme18I	GGWCC	7 cut(s)	1385, 1558, 1702, 1846, 1990, 2125, 2769
BmeT110I	CYCGRG	1 cut(s)	3296
BmgT120I	GGNCC	9 cut(s)	644, 1385, 1558, 1702, 1846, 1990, 2125, 2769, 3428
BmiI	GGNNCC	7 cut(s)	723, 865, 1456, 1734, 2431, 3362, 3429
BmrFI	CCNGG	3 cut(s)	558, 1049, 2874
BmrI	ACTGGG	1 cut(s)	1105
BmsI	GCATC	3 cut(s)	391, 543, 3228
BmuI	ACTGGG	1 cut(s)	1105
BpiI	GAAGAC	1 cut(s)	3682
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	3519
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	7 cut(s)	781, 1549, 2116, 2512, 2576, 3298, 3466
Bsa29I	ATCGAT	1 cut(s)	2264
BsaAI	YACGTR	1 cut(s)	3688
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	4 cut(s)	1647, 1791, 2214, 2935
BsaWI	WCCGGW	3 cut(s)	718, 3194, 3209
BsaXI	ACNNNNNCTCC	4 cut(s)	1982, 2012, 3107, 3137
Bse118I	RCCGGY	1 cut(s)	2967
Bse1I	ACTGG	3 cut(s)	578, 1006, 1100
Bse21I	CCTNAGG	1 cut(s)	3150
Bse3DI	GCAATG	3 cut(s)	104, 2458, 2747
BseBI	CCWGG	3 cut(s)	558, 1049, 2874
BseCI	ATCGAT	1 cut(s)	2264
BseDI	CCNNGG	4 cut(s)	1647, 1791, 2214, 2935
BseGI	GGATG	8 cut(s)	60, 558, 2801, 2923, 3002, 3085, 3451, 3523
BseMI	GCAATG	3 cut(s)	104, 2458, 2747
BseMII	CTCAG	9 cut(s)	371, 599, 1233, 2555, 2635, 2685, 3141, 3389, 3659
BseNI	ACTGG	3 cut(s)	578, 1006, 1100
BseRI	GAGGAG	6 cut(s)	1656, 1800, 1944, 2223, 3112, 3423
BseXI	GCAGC	4 cut(s)	222, 258, 276, 1380
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	5 cut(s)	323, 645, 2821, 3285, 3430
BshNI	GGYRCC	2 cut(s)	1454, 1732
BshVI	ATCGAT	1 cut(s)	2264
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	3296
BsiSI	CCGG	4 cut(s)	719, 2968, 3195, 3210
BslFI	GGGAC	6 cut(s)	643, 1062, 1165, 1214, 2307, 2784
BsmAI	GTCTC	7 cut(s)	290, 897, 1613, 1757, 1901, 2889, 3340
BsmFI	GGGAC	6 cut(s)	643, 1062, 1165, 1214, 2307, 2784
BsmI	GAATGC	1 cut(s)	1514
BsnI	GGCC	5 cut(s)	323, 645, 2821, 3285, 3430
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	3296
Bsp1286I	GDGCHC	1 cut(s)	637
BspACI	CCGC	7 cut(s)	66, 1254, 2537, 2767, 3241, 3282, 3458
BspANI	GGCC	5 cut(s)	323, 645, 2821, 3285, 3430
BspCNI	CTCAG	9 cut(s)	372, 600, 1232, 2556, 2634, 2684, 3142, 3388, 3658
BspDI	ATCGAT	1 cut(s)	2264
BspLI	GGNNCC	7 cut(s)	723, 865, 1456, 1734, 2431, 3362, 3429
BspPI	GGATC	6 cut(s)	894, 1012, 3148, 3355, 3368, 3482
BspT107I	GGYRCC	2 cut(s)	1454, 1732
BspTI	CTTAAG	2 cut(s)	959, 2311
BspTNI	GGTCTC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	3282
BsrDI	GCAATG	3 cut(s)	104, 2458, 2747
BsrFI	RCCGGY	1 cut(s)	2967
BsrI	ACTGG	3 cut(s)	578, 1006, 1100
BssAI	RCCGGY	1 cut(s)	2967
BssECI	CCNNGG	4 cut(s)	1647, 1791, 2214, 2935
BssNAI	GTATAC	1 cut(s)	2360
BssT1I	CCWWGG	4 cut(s)	1647, 1791, 2214, 2935
Bst1107I	GTATAC	1 cut(s)	2360
Bst2UI	CCWGG	3 cut(s)	558, 1049, 2874
Bst4CI	ACNGT	2 cut(s)	49, 83
Bst6I	CTCTTC	6 cut(s)	900, 1182, 1255, 1674, 1818, 2190
BstAFI	CTTAAG	2 cut(s)	959, 2311
BstBAI	YACGTR	1 cut(s)	3688
BstC8I	GCNNGC	3 cut(s)	372, 500, 2898
BstEII	GGTNACC	1 cut(s)	932
BstF5I	GGATG	8 cut(s)	60, 558, 2801, 2923, 3002, 3085, 3451, 3523
BstMAI	GTCTC	7 cut(s)	290, 897, 1613, 1757, 1901, 2889, 3340
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	3 cut(s)	558, 1049, 2874
BstNSI	RCATGY	7 cut(s)	502, 1057, 1438, 2537, 3182, 3549, 3685
BstPI	GGTNACC	1 cut(s)	932
BstSCI	CCNGG	3 cut(s)	556, 1047, 2872
BstSNI	TACGTA	1 cut(s)	3688
BstV1I	GCAGC	4 cut(s)	222, 258, 276, 1380
BstV2I	GAAGAC	1 cut(s)	3682
BstX2I	RGATCY	3 cut(s)	804, 3259, 3360
BstYI	RGATCY	3 cut(s)	804, 3259, 3360
BstZ17I	GTATAC	1 cut(s)	2360
Bsu15I	ATCGAT	1 cut(s)	2264
Bsu36I	CCTNAGG	1 cut(s)	3150
BsuI	GTATCC	1 cut(s)	2027
BsuRI	GGCC	5 cut(s)	323, 645, 2821, 3285, 3430
BsuTUI	ATCGAT	1 cut(s)	2264
BtsCI	GGATG	8 cut(s)	60, 558, 2801, 2923, 3002, 3085, 3451, 3523
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	5 cut(s)	45, 596, 999, 1372, 2866
Cac8I	GCNNGC	3 cut(s)	372, 500, 2898
CaiI	CAGNNNCTG	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	2967
Cfr13I	GGNCC	9 cut(s)	644, 1385, 1558, 1702, 1846, 1990, 2125, 2769, 3428
ClaI	ATCGAT	1 cut(s)	2264
Csp6I	GTAC	4 cut(s)	177, 1733, 3396, 3685
CviQI	GTAC	4 cut(s)	177, 1733, 3396, 3685
DraI	TTTAAA	1 cut(s)	3471
EaeI	YGGCCR	1 cut(s)	3283
Eam1104I	CTCTTC	6 cut(s)	900, 1182, 1255, 1674, 1818, 2190
EarI	CTCTTC	6 cut(s)	900, 1182, 1255, 1674, 1818, 2190
EciI	GGCGGA	1 cut(s)	1243
Eco105I	TACGTA	1 cut(s)	3688
Eco130I	CCWWGG	4 cut(s)	1647, 1791, 2214, 2935
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	7 cut(s)	1385, 1558, 1702, 1846, 1990, 2125, 2769
Eco57I	CTGAAG	5 cut(s)	290, 1348, 1457, 2024, 2273
Eco81I	CCTNAGG	1 cut(s)	3150
Eco88I	CYCGRG	1 cut(s)	3296
Eco91I	GGTNACC	1 cut(s)	932
EcoO109I	RGGNCCY	2 cut(s)	644, 3428
EcoO65I	GGTNACC	1 cut(s)	932
EcoRI	GAATTC	2 cut(s)	169, 3493
EcoRII	CCWGG	3 cut(s)	556, 1047, 2872
EcoT14I	CCWWGG	4 cut(s)	1647, 1791, 2214, 2935
ErhI	CCWWGG	4 cut(s)	1647, 1791, 2214, 2935
FalI	AAGNNNNNCTT	8 cut(s)	388, 420, 1653, 1685, 1797, 1829, 3260, 3292
FaqI	GGGAC	6 cut(s)	643, 1062, 1165, 1214, 2307, 2784
FauI	CCCGC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	2359
Fnu4HI	GCNGC	7 cut(s)	211, 247, 265, 1394, 3242, 3283, 3458
FokI	GGATG	8 cut(s)	47, 565, 2808, 2930, 3009, 3092, 3458, 3530
Fsp4HI	GCNGC	7 cut(s)	211, 247, 265, 1394, 3242, 3283, 3458
FspBI	CTAG	9 cut(s)	1946, 2247, 2327, 2337, 2355, 2388, 2615, 2949, 2988
GluI	GCNGC	7 cut(s)	211, 247, 265, 1394, 3242, 3283, 3458
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	3519
HaeIII	GGCC	5 cut(s)	323, 645, 2821, 3285, 3430
HapII	CCGG	4 cut(s)	719, 2968, 3195, 3210
HincII	GTYRAC	3 cut(s)	1093, 2076, 2665
HindII	GTYRAC	3 cut(s)	1093, 2076, 2665
HindIII	AAGCTT	6 cut(s)	155, 368, 668, 1718, 1862, 2006
HpaI	GTTAAC	1 cut(s)	1093
HpaII	CCGG	4 cut(s)	719, 2968, 3195, 3210
HphI	GGTGA	6 cut(s)	944, 1739, 2387, 2876, 3097, 3199
Hpy166II	GTNNAC	7 cut(s)	73, 1093, 1388, 2076, 2360, 2665, 3691
Hpy8I	GTNNAC	7 cut(s)	73, 1093, 1388, 2076, 2360, 2665, 3691
HpyCH4III	ACNGT	2 cut(s)	49, 83
HpyCH4IV	ACGT	1 cut(s)	3687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	3687
KpnI	GGTACC	1 cut(s)	1736
KspAI	GTTAAC	1 cut(s)	1093
Lsp1109I	GCAGC	4 cut(s)	222, 258, 276, 1380
LweI	GCATC	3 cut(s)	391, 543, 3228
MaeI	CTAG	9 cut(s)	1946, 2247, 2327, 2337, 2355, 2388, 2615, 2949, 2988
MaeII	ACGT	1 cut(s)	3687
MaeIII	GTNAC	9 cut(s)	49, 202, 569, 932, 1939, 2207, 2375, 2624, 3570
MbiI	CCGCTC	1 cut(s)	3282
MfeI	CAATTG	4 cut(s)	360, 2161, 3245, 3347
MflI	RGATCY	3 cut(s)	804, 3259, 3360
MhlI	GDGCHC	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	1405
MslI	CAYNNNNRTG	2 cut(s)	1449, 3330
MspA1I	CMGCKG	1 cut(s)	1393
MspCI	CTTAAG	2 cut(s)	959, 2311
MspI	CCGG	4 cut(s)	719, 2968, 3195, 3210
MspR9I	CCNGG	3 cut(s)	558, 1049, 2874
MunI	CAATTG	4 cut(s)	360, 2161, 3245, 3347
Mva1269I	GAATGC	1 cut(s)	1514
MvaI	CCWGG	3 cut(s)	558, 1049, 2874
MwoI	GCNNNNNNNGC	1 cut(s)	376
NlaIV	GGNNCC	7 cut(s)	723, 865, 1456, 1734, 2431, 3362, 3429
NmuCI	GTSAC	5 cut(s)	569, 932, 1939, 2375, 3570
NspI	RCATGY	7 cut(s)	502, 1057, 1438, 2537, 3182, 3549, 3685
PaeI	GCATGC	1 cut(s)	502
PciI	ACATGT	4 cut(s)	1053, 3178, 3545, 3681
PctI	GAATGC	1 cut(s)	1514
PdmI	GAANNNNTTC	1 cut(s)	1405
PfeI	GAWTC	9 cut(s)	137, 146, 542, 1477, 1576, 1901, 2143, 2180, 2921
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	7 cut(s)	212, 248, 266, 1395, 3243, 3284, 3459
Ppu21I	YACGTR	1 cut(s)	3688
PscI	ACATGT	4 cut(s)	1053, 3178, 3545, 3681
Psp6I	CCWGG	3 cut(s)	556, 1047, 2872
PspEI	GGTNACC	1 cut(s)	932
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	3 cut(s)	556, 1047, 2872
PspN4I	GGNNCC	7 cut(s)	723, 865, 1456, 1734, 2431, 3362, 3429
PspPI	GGNCC	9 cut(s)	644, 1385, 1558, 1702, 1846, 1990, 2125, 2769, 3428
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	3 cut(s)	804, 3259, 3360
PvuII	CAGCTG	1 cut(s)	1393
RsaI	GTAC	4 cut(s)	178, 1734, 3397, 3686
RsaNI	GTAC	4 cut(s)	177, 1733, 3396, 3685
RseI	CAYNNNNRTG	2 cut(s)	1449, 3330
SatI	GCNGC	7 cut(s)	211, 247, 265, 1394, 3242, 3283, 3458
Sau96I	GGNCC	9 cut(s)	644, 1385, 1558, 1702, 1846, 1990, 2125, 2769, 3428
ScrFI	CCNGG	3 cut(s)	558, 1049, 2874
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	391, 543, 3228
SgrAI	CRCCGGYG	1 cut(s)	2967
SinI	GGWCC	7 cut(s)	1385, 1558, 1702, 1846, 1990, 2125, 2769
SmiMI	CAYNNNNRTG	2 cut(s)	1449, 3330
SmlI	CTYRAG	9 cut(s)	760, 959, 1528, 2095, 2311, 2491, 2591, 3277, 3481
SmoI	CTYRAG	9 cut(s)	760, 959, 1528, 2095, 2311, 2491, 2591, 3277, 3481
SnaBI	TACGTA	1 cut(s)	3688
SpeI	ACTAGT	1 cut(s)	2987
SphI	GCATGC	1 cut(s)	502
SsiI	CCGC	7 cut(s)	66, 1254, 2537, 2767, 3241, 3282, 3458
SspMI	CTAG	9 cut(s)	1946, 2247, 2327, 2337, 2355, 2388, 2615, 2949, 2988
StyD4I	CCNGG	3 cut(s)	556, 1047, 2872
StyI	CCWWGG	4 cut(s)	1647, 1791, 2214, 2935
TaaI	ACNGT	2 cut(s)	49, 83
TaiI	ACGT	1 cut(s)	3690
TaqI	TCGA	7 cut(s)	173, 898, 1019, 1125, 1188, 1899, 2264
TauI	GCSGC	3 cut(s)	3244, 3285, 3460
TfiI	GAWTC	9 cut(s)	137, 146, 542, 1477, 1576, 1901, 2143, 2180, 2921
TscAI	CASTG	5 cut(s)	52, 603, 1006, 1372, 2866
TseFI	GTSAC	5 cut(s)	569, 932, 1939, 2375, 3570
TseI	GCWGC	4 cut(s)	210, 246, 264, 1393
Tsp45I	GTSAC	5 cut(s)	569, 932, 1939, 2375, 3570
TspGWI	ACGGA	3 cut(s)	1311, 2442, 3153
TspRI	CASTG	5 cut(s)	52, 603, 1006, 1372, 2866
Van91I	CCANNNNNTGG	1 cut(s)	887
Vha464I	CTTAAG	2 cut(s)	959, 2311
VpaK11BI	GGWCC	7 cut(s)	1385, 1558, 1702, 1846, 1990, 2125, 2769
XapI	RAATTY	8 cut(s)	131, 169, 391, 490, 875, 1235, 3288, 3493
XbaI	TCTAGA	5 cut(s)	1945, 2326, 2336, 2614, 2948
XceI	RCATGY	7 cut(s)	502, 1057, 1438, 2537, 3182, 3549, 3685
XmiI	GTMKAC	1 cut(s)	2359
XmnI	GAANNNNTTC	1 cut(s)	1405
XspI	CTAG	9 cut(s)	1946, 2247, 2327, 2337, 2355, 2388, 2615, 2949, 2988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.