Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

21212807 .. 21215823

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATCCCTAAGATGCGCCACGTCATAGCAGTGTGGAAGGGTGACCAACATCTTTGTGCCCACAAGTACTGCATAAGTGAAGCGAGGTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCAGCTCCTGAGCAGCCGCCATCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACACTATGACCTTCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATGCTGGGCAAGGATCTTTGGGTGGTTGTTTGGGATTCCGGGAAGCTCTTGGTTCTCTCTTTCTGCAACGAAATGCACAGGATTTTTCCTGTGACACACGGTCAACTTTCTAATCCTGGAAACTCAAGGAATCAGCTTGCAAGAATGCTAGCAATTGATTCAAGAAACATGCAGATTTTTGTGAAAACTCCAACTGGGAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCAGTTAGGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

193

Amino Acids

21.96

Weight (kDa)

8.98

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	99 - 178	6.9e-07	RSE1/DDB1/CPSF1 first beta-propeller
ubiquitin	PF00240	162 - 190	2.6e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	167, 330, 559
AfaI	GTAC	2 cut(s)	68, 289
AgsI	TTSAA	3 cut(s)	107, 209, 471
AhdI	GACNNNNNGTC	1 cut(s)	408
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	5 cut(s)	151, 185, 260, 355, 445
AluI	AGCT	5 cut(s)	151, 185, 260, 355, 445
AlwI	GGATC	3 cut(s)	167, 330, 559
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	193, 534
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	205, 546
BccI	CCATC	3 cut(s)	208, 521, 551
BciT130I	CCWGG	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	349
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	3 cut(s)	194, 197, 535
BlsI	GCNGC	3 cut(s)	195, 198, 536
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	349, 426
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	349, 426
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	3, 300
BmtI	GCTAGC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	349
Bsa29I	ATCGAT	1 cut(s)	546
Bse1I	ACTGG	2 cut(s)	508, 568
BseBI	CCWGG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	508, 568
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	205, 546
BseYI	CCCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	3, 172, 322, 564
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	181
BspDI	ATCGAT	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	3 cut(s)	167, 330, 559
BsrI	ACTGG	2 cut(s)	508, 568
BssMI	GATC	4 cut(s)	3, 172, 322, 564
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	141, 287, 410
BstC8I	GCNNGC	2 cut(s)	447, 459
BstDEI	CTNAG	2 cut(s)	9, 189
BstEII	GGTNACC	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	6, 175, 325, 567
BstMBI	GATC	4 cut(s)	3, 172, 322, 564
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	481
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	347, 424
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	205, 546
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	3 cut(s)	172, 322, 564
BstYI	RGATCY	3 cut(s)	172, 322, 564
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	447, 459
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	67, 288
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	9 cut(s)	113, 151, 185, 196, 260, 299, 355, 445, 560
CviKI_1	RGCY	9 cut(s)	113, 151, 185, 196, 260, 299, 355, 445, 560
CviQI	GTAC	2 cut(s)	67, 288
DdeI	CTNAG	2 cut(s)	9, 189
DpnI	GATC	4 cut(s)	5, 174, 324, 566
DpnII	GATC	4 cut(s)	3, 172, 322, 564
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	521
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	1 cut(s)	481
FaiI	YATR	8 cut(s)	26, 74, 147, 154, 217, 228, 245, 479
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	194, 197, 535
Fsp4HI	GCNGC	3 cut(s)	194, 197, 535
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	194, 197, 535
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	2 cut(s)	283, 413
HindII	GTYRAC	2 cut(s)	283, 413
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	344, 439, 467
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	283, 413
Hpy188III	TCNNGA	3 cut(s)	188, 471, 521
Hpy8I	GTNNAC	2 cut(s)	283, 413
HpyAV	CCTTC	3 cut(s)	31, 203, 259
HpyCH4III	ACNGT	3 cut(s)	141, 287, 410
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	72, 169, 375, 385, 449, 481
HpyF3I	CTNAG	2 cut(s)	9, 189
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	3, 172, 322, 564
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	201, 256, 299, 361, 373, 411, 411, 438, 489
Lsp1109I	GCAGC	2 cut(s)	205, 546
LweI	GCATC	2 cut(s)	3, 300
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	41, 400
MalI	GATC	4 cut(s)	5, 174, 324, 566
MboI	GATC	4 cut(s)	3, 172, 322, 564
MboII	GAAGA	3 cut(s)	244, 277, 520
MfeI	CAATTG	2 cut(s)	204, 462
MflI	RGATCY	3 cut(s)	172, 322, 564
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	204, 235, 462
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	3 cut(s)	78, 141, 517
MslI	CAYNNNNRTG	2 cut(s)	29, 54
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	349, 426
MunI	CAATTG	2 cut(s)	204, 462
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	426
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	3, 172, 322, 564
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	41, 400
NspI	RCATGY	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	521
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	344, 439, 467
PfoI	TCCNGGA	2 cut(s)	347, 424
PkrI	GCNGC	3 cut(s)	195, 198, 536
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	172, 322, 564
RsaI	GTAC	2 cut(s)	68, 289
RsaNI	GTAC	2 cut(s)	67, 288
RseI	CAYNNNNRTG	2 cut(s)	29, 54
SatI	GCNGC	3 cut(s)	194, 197, 535
Sau3AI	GATC	4 cut(s)	3, 172, 322, 564
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	349, 426
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	3, 300
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	29, 54
SmlI	CTYRAG	2 cut(s)	433, 521
SmoI	CTYRAG	2 cut(s)	433, 521
Sse9I	AATT	3 cut(s)	204, 235, 462
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	347, 424
TaaI	ACNGT	3 cut(s)	141, 287, 410
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	522, 546
TasI	AATT	3 cut(s)	204, 235, 462
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	3 cut(s)	344, 439, 467
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	41, 400
TseI	GCWGC	2 cut(s)	193, 534
Tsp45I	GTSAC	2 cut(s)	41, 400
TspRI	CASTG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	521
XspI	CTAG	1 cut(s)	458
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.