Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

21290708 .. 21293947

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGCCCACTCTGTTCCTCCATTTCTTCCTTTTCTTATTCACAACCACTGTTTCTAACCTCATCCCCGCAGTTCACAGCAACTGCATTGAAGCCCAGCAACAATCATTGCTCCATTTCAAACAAAGTCTTGAATTTAATTCTTCCAAATCCTCCAAGCTTATCACATGGAATTCGAGCACCGACTGCTGTTCTTGGCACGGTGTAACTTGCAGCACCAATGGGCGTGTTGTCGGACTTGATCTCAGCAGCGAGTCTATCTTCTGCAGCATTGACAATTCAAGCAATCTCTTCCAACTTCAACATCTTCAGAGCCTCAATTTGGCCGATAACAACTTCAATGACTCTTCAATTCCATCTGCAATCGGAAAGCTTGCAAATTTGAGGTATTTGAATTTAAGTGGTGCTTATTTTTCTGGGCAAATTCCCATTGAGGTTGCACGCTTGAAAAGGTTGGTAGTTCTTGATCTCTCTAAGCATCATTTCTCGTGGAAGGTGTTAGACCTTGAGAAATCGAAGTTTGGCACTGCAATCCAGTACCTTACAGACCTTACAGCGTTAAAACTTGAGAACCCGAATTTAGGCACTTTAATCCAGAACCTTACAGAGCTTACAGAGTTAAATCTTGATTCTGTAAAGATATCAGGACAGGGGAGTGACTGGTGCGAAGCCATATCATCTTCACTGCCAAATCTGAGGGTGTTGAGCTTGTCTTATTGTGGTCTTTCAGGCCCTATTTGTGAGTCCCTTGCAAAGCTTCAATCTCTGTATGAGATTGACTTGTCATATAACTCCTTCTATGCTCCGGTTCCAAGATTCTTTGCCAATTTTCCAAACTTGACTTACCTGAGTCTTAGTTATTCCTACTTGCTCGGAACATTTCCCCAAGAGATCTTTCAGATACCTTCCCTACAAACCATTGGCCTTTCTGGTAATGGTGTTCTTCATGGTTCCTTTCCAGAATTTCCAAACAATGGGTCTCTTCGATCCTTAATTGTAGATGGGACAAGTTTTTCAGGTGACCTGCCCAACTCTATTGGAAATCTTAAGATGTTGTCAAGTGTGTATCTTTCAGAGTGCAATTTCACAGGATCAGTTCCCAAGTCGATTGAAAACCTCACACTATTGGCTGACCTGGACATGTCCGGGAACAGATTTAATAGTCCCATTAGTTCTATTCACTGGGAAACCCTTGTTAATCTGGAACGCCTCGATTTGAGCAACAATCAACTCTATGGGACTATTCCTTCATCTGTTGTTTCTCTTCCCAAACTGGAAACAGTAAGACTATCCCACAATCGGTTCTCGGTTATAGAAGCTCCTCTTCCTAATTCCACTTCTGCTTTATCTTCTCTGGACCTTCATTCCAACAAGCTTCAAGGCGAGATACCTAATTGGATTTTGAGTCTCAAATCTCTTAATTCCCTTGATCTTTCTAACAACTCCTTGGTGACTCTAGAAGCTGCTCTTCCTAATTCCACTTCTGCTTTATCTTCTCTGGACCTTCATTCCAACAAACTTCAAGGTATCCATTCCTCATATTCCTTCCTTCAGCTTAATTACTTGGGATTAGCTTCTAACAAGTTGACAAGATTCCCAGACTTCTTGAGAAATCAATCCCATTTAACCAACTTGGACCTCTCAGACAACCAGATTCAAGGACAGATACCCAATTGGATTTGGATTTTGGATTCTCTTCAAGAACTAAATCTTTCTTGTAACTCCTTGGAAAGTTTAGAAGCTCCTCTACTTAATTCTACCTATGTTCATGATCTGTCAGTGGTTGATCTTCATTCAAACCAGCTTCAGGGACATTTCCCCTTGTTCTTCAGCAGTAGGTATCTAGATTATTCAAGAAATAATTTCAGCTCTAGTATACCGACTAACATTGGTGACTTCATTTTTACTCGGTCTTACCTTTCTCTTTCAAGCAATAACTTCCACGGGGCCATTCCAAAATCAATATGCAACGCAAGTGGTTGGGTTCTTGATCTGTCCAATAATTCCTTGAGTGGAAACATTCCCCAATGCTTGACTCAATCATCTCAACTTTCGGTCATTGATTTGAAGAGAAACAACCTGAGTGGCACAATTCCCGATAATTTTCTCAGCGGTTGTGAGCTACAAACTCTAGACCTCAGTAACAATCAAATACAAGGCCAGTTTCCGAAATCTCTTGTCAACTGCTCAAGTTTAGGGGTTTTAAATCTCGGAAACAATCAGATAACAGATACTTTTCCATGCTTTTTAATGAGCTTATCTACCTTGCGTGTCCTTGTTTTGCGGTCCAACAAGTTTTATGGAAGCATTGGATGTCCTAAGACCAATGGCACATGGCCTGTGCTTCAAATAATAAATTTAGCTCACAACAATTTCAGTGGTGATATGCCAGGAAGATTGTCTCTGACATGGCAGGCTATGGTGTCTAATGAGGATGATTCTCCAACTAACCTTGGATTTTCTGATCAGCCGTGCAGGAATAATCTATTTTATATGGCTGATAGATCTTGTCTTTTGAATAGTTTTTTTCACAGAGGTTTTGTTTATTATTATAGAGATGCAATTACGACTATCATCAAAGGTTTGGAGTTGGATTTTGTTAAGATTCTAACTATATTCACCTTGATTGACTACTCCTCCAACAAATTCAACGGATCAATACCTGAGGAAATTGGAGAGTTGAAATCACTATATTTCCTCAATTTATCCGGTAATACTTTCACCGGAAACATCCCATCATCATTTGGTAAGATGCGGAAATTGCAGTCCTTAGACCTCTCACAGAACCACCTGAGCGGCCAAATTCCACCGCAGCTTGCAACTCTCACCTTCCTTTCGTCCTTGGATGTCTCATATAATCAACTGACGGGAAGGATCCCAACCGGCACTCAATTTTCAACATTTCCAAATACCTCCTTCGAGGGTAACAAAGGATTATGGGGACCTCCTCTGACATCGGATACAGCAATCGTATTGCCACCTCCAAAGTTTAATGGAAGCTCAAGTAATCCGAATTCTGGAGATGAGATTGATTGGAATATTATCAGTGCTGAAATTGGATTTACATGTGGGTTTGGAATTGCCGTCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGCTATGTTTAACATCCTGTTCAAGATATTCCCTCAGCTGGAACACAGATTTGGTAATCACAGAAGGCATGTTTACATAAATCAAAAGTATTGGAGACGTTTAAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

1079

Amino Acids

119.91

Weight (kDa)

6.25

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 71	1.6e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	87 - 305	2.4e-16	Leucine-rich repeat region
LRR_8	PF13855	254 - 311	9.9e-08	Leucine rich repeat
LRR_8	PF13855	422 - 482	1.6e-08	Leucine rich repeat
LRR_8	PF13855	447 - 506	6.4e-06	Leucine rich repeat
LRR_8	PF13855	471 - 528	8e-06	Leucine rich repeat
LRR_8	PF13855	517 - 575	5.3e-06	Leucine rich repeat
LRR_8	PF13855	706 - 765	2.9e-08	Leucine rich repeat
LRR_4	PF12799	706 - 743	4.7e-07	Leucine Rich repeats (2 copies)
LRR_14	PF23598	885 - 949	2.3e-06	Leucine-rich repeat region
LRR_8	PF13855	895 - 954	2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1029
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccBSI	CCGCTC	1 cut(s)	2793
AccI	GTMKAC	1 cut(s)	1873
AciI	CCGC	6 cut(s)	66, 2109, 2281, 2752, 2793, 2807
AclWI	GGATC	5 cut(s)	978, 1096, 2659, 2866, 2879
AcoI	YGGCCR	2 cut(s)	321, 2794
AcuI	CTGAAG	4 cut(s)	290, 1532, 1787, 1810
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	7 cut(s)	319, 578, 971, 1296, 1804, 3014, 3166
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	2 cut(s)	1137, 3062
AjnI	CCWGG	2 cut(s)	1131, 2386
AjuI	GAANNNNNNNTTGG	4 cut(s)	876, 908, 3162, 3194
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	5 cut(s)	981, 1409, 2403, 2851, 3217
AlwI	GGATC	5 cut(s)	978, 1096, 2659, 2866, 2879
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	7 cut(s)	321, 727, 919, 1944, 2155, 2333, 2794
ApeKI	GCWGC	5 cut(s)	210, 246, 264, 1460, 2809
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
AspS9I	GGNCC	7 cut(s)	728, 1354, 1498, 1633, 1944, 2283, 2939
AsuC2I	CCSGG	1 cut(s)	1144
AsuHPI	GGTGA	7 cut(s)	1028, 1459, 1901, 2390, 2608, 2710, 2815
AvaII	GGWCC	5 cut(s)	1354, 1498, 1633, 2283, 2939
AxyI	CCTNAGG	1 cut(s)	2661
BamHI	GGATCC	1 cut(s)	2871
BarI	GAAGNNNNNNTAC	2 cut(s)	1728, 1760
BauI	CACGAG	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	3162
BbvI	GCAGC	5 cut(s)	222, 258, 276, 1447, 2821
BccI	CCATC	4 cut(s)	361, 992, 2740, 3102
BceAI	ACGGC	2 cut(s)	2452, 3065
BciT130I	CCWGG	2 cut(s)	1133, 2388
BciVI	GTATCC	2 cut(s)	1535, 2950
BclI	TGATCA	1 cut(s)	2461
BcnI	CCSGG	1 cut(s)	1144
BcoDI	GTCTC	5 cut(s)	981, 1409, 2403, 2851, 3217
BfaI	CTAG	4 cut(s)	1454, 1841, 1869, 2129
BfmI	CTRYAG	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	1029
BfuI	GTATCC	2 cut(s)	1535, 2950
BglII	AGATCT	2 cut(s)	888, 2501
BisI	GCNGC	6 cut(s)	211, 247, 265, 1461, 2794, 2810
BlsI	GCNGC	6 cut(s)	212, 248, 266, 1462, 2795, 2811
Bme1390I	CCNGG	3 cut(s)	1133, 1144, 2388
Bme18I	GGWCC	5 cut(s)	1354, 1498, 1633, 2283, 2939
BmgT120I	GGNCC	7 cut(s)	728, 1354, 1498, 1633, 1944, 2283, 2939
BmiI	GGNNCC	5 cut(s)	807, 949, 1945, 2873, 2940
BmrFI	CCNGG	3 cut(s)	1133, 1144, 2388
BmrI	ACTGGG	1 cut(s)	1189
BmsI	GCATC	3 cut(s)	484, 2545, 2739
BmuI	ACTGGG	1 cut(s)	1189
BpmI	CTGGAG	1 cut(s)	3036
Bpu10I	CCTNAGC	2 cut(s)	2789, 3162
BpuEI	CTTGAG	6 cut(s)	524, 584, 1624, 2026, 2170, 2983
BpuMI	CCSGG	1 cut(s)	1144
BsaI	GGTCTC	1 cut(s)	981
BsaJI	CCNNGG	5 cut(s)	1443, 1722, 1939, 2449, 2838
BsaWI	WCCGGW	3 cut(s)	802, 2705, 2720
BsaXI	ACNNNNNCTCC	2 cut(s)	2618, 2648
Bsc4I	CCNNNNNNNGG	7 cut(s)	319, 578, 971, 1296, 1804, 3014, 3166
Bse118I	RCCGGY	1 cut(s)	2879
Bse1I	ACTGG	5 cut(s)	532, 662, 1184, 1275, 2158
Bse21I	CCTNAGG	1 cut(s)	2661
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	1133, 2388
BseDI	CCNNGG	5 cut(s)	1443, 1722, 1939, 2449, 2838
BseGI	GGATG	6 cut(s)	60, 2315, 2437, 2727, 2848, 3141
BseLI	CCNNNNNNNGG	7 cut(s)	319, 578, 971, 1296, 1804, 3014, 3166
BseMI	GCAATG	1 cut(s)	104
BseNI	ACTGG	5 cut(s)	532, 662, 1184, 1275, 2158
BseRI	GAGGAG	4 cut(s)	1308, 1731, 2623, 2934
BseXI	GCAGC	5 cut(s)	222, 258, 276, 1447, 2821
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	2491
BshFI	GGCC	7 cut(s)	323, 729, 921, 1946, 2157, 2335, 2796
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	5 cut(s)	803, 1143, 2706, 2721, 2880
BslFI	GGGAC	6 cut(s)	727, 1015, 1146, 1249, 1821, 2952
BslI	CCNNNNNNNGG	7 cut(s)	319, 578, 971, 1296, 1804, 3014, 3166
BsmAI	GTCTC	5 cut(s)	981, 1409, 2403, 2851, 3217
BsmBI	CGTCTC	1 cut(s)	3217
BsmFI	GGGAC	6 cut(s)	727, 1015, 1146, 1249, 1821, 2952
BsnI	GGCC	7 cut(s)	323, 729, 921, 1946, 2157, 2335, 2796
Bso31I	GGTCTC	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	179
BspACI	CCGC	6 cut(s)	66, 2109, 2281, 2752, 2793, 2807
BspANI	GGCC	7 cut(s)	323, 729, 921, 1946, 2157, 2335, 2796
BspHI	TCATGA	1 cut(s)	1765
BspLI	GGNNCC	5 cut(s)	807, 949, 1945, 2873, 2940
BspMAI	CTGCAG	1 cut(s)	266
BspMI	ACCTGC	1 cut(s)	1029
BspPI	GGATC	5 cut(s)	978, 1096, 2659, 2866, 2879
BspQI	GCTCTTC	1 cut(s)	1470
BspTI	CTTAAG	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	981
BsrBI	CCGCTC	1 cut(s)	2793
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	2879
BsrI	ACTGG	5 cut(s)	532, 662, 1184, 1275, 2158
BssAI	RCCGGY	1 cut(s)	2879
BssECI	CCNNGG	5 cut(s)	1443, 1722, 1939, 2449, 2838
BssNAI	GTATAC	1 cut(s)	1874
BssSI	CACGAG	1 cut(s)	484
BssT1I	CCWWGG	4 cut(s)	1443, 1722, 2449, 2838
Bst1107I	GTATAC	1 cut(s)	1874
Bst2BI	CACGAG	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	1133, 2388
Bst4CI	ACNGT	3 cut(s)	49, 200, 1279
Bst6I	CTCTTC	8 cut(s)	293, 349, 984, 1266, 1326, 1470, 1698, 2060
BstAFI	CTTAAG	1 cut(s)	1043
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	372, 439, 2412, 2814
BstDSI	CCRYGG	1 cut(s)	1939
BstEII	GGTNACC	1 cut(s)	1016
BstF5I	GGATG	6 cut(s)	60, 2315, 2437, 2727, 2848, 3141
BstMAI	GTCTC	5 cut(s)	981, 1409, 2403, 2851, 3217
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 2758
BstNI	CCWGG	2 cut(s)	1133, 2388
BstNSI	RCATGY	3 cut(s)	1141, 3066, 3200
BstPI	GGTNACC	1 cut(s)	1016
BstSCI	CCNGG	3 cut(s)	1131, 1142, 2386
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	5 cut(s)	222, 258, 276, 1447, 2821
BstX2I	RGATCY	3 cut(s)	888, 2501, 2871
BstYI	RGATCY	3 cut(s)	888, 2501, 2871
BstZ17I	GTATAC	1 cut(s)	1874
Bsu36I	CCTNAGG	1 cut(s)	2661
BsuI	GTATCC	2 cut(s)	1535, 2950
BsuRI	GGCC	7 cut(s)	323, 729, 921, 1946, 2157, 2335, 2796
BtgI	CCRYGG	1 cut(s)	1939
BtsCI	GGATG	6 cut(s)	60, 2315, 2437, 2727, 2848, 3141
BtsI	GCAGTG	2 cut(s)	522, 680
BtsIMutI	CAGTG	7 cut(s)	45, 522, 680, 1177, 1782, 2380, 3049
BveI	ACCTGC	1 cut(s)	1029
Cac8I	GCNNGC	4 cut(s)	372, 439, 2412, 2814
CaiI	CAGNNNCTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	1765
Cfr10I	RCCGGY	1 cut(s)	2879
Cfr13I	GGNCC	7 cut(s)	728, 1354, 1498, 1633, 1944, 2283, 2939
Csp6I	GTAC	1 cut(s)	535
CspCI	CAANNNNNGTGG	6 cut(s)	1954, 1989, 2062, 2097, 2356, 2391
CviAII	CATG	9 cut(s)	165, 944, 1138, 1766, 2238, 2331, 2406, 3063, 3197
CviQI	GTAC	1 cut(s)	535
DraI	TTTAAA	2 cut(s)	2202, 3231
EaeI	YGGCCR	2 cut(s)	321, 2794
Eam1104I	CTCTTC	8 cut(s)	293, 349, 984, 1266, 1326, 1470, 1698, 2060
EarI	CTCTTC	8 cut(s)	293, 349, 984, 1266, 1326, 1470, 1698, 2060
Eco130I	CCWWGG	4 cut(s)	1443, 1722, 2449, 2838
Eco31I	GGTCTC	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	5 cut(s)	1354, 1498, 1633, 2283, 2939
Eco57I	CTGAAG	4 cut(s)	290, 1532, 1787, 1810
Eco81I	CCTNAGG	1 cut(s)	2661
Eco91I	GGTNACC	1 cut(s)	1016
EcoO109I	RGGNCCY	2 cut(s)	728, 2939
EcoO65I	GGTNACC	1 cut(s)	1016
EcoRI	GAATTC	2 cut(s)	169, 3010
EcoRII	CCWGG	2 cut(s)	1131, 2386
EcoRV	GATATC	1 cut(s)	639
EcoT14I	CCWWGG	4 cut(s)	1443, 1722, 2449, 2838
ErhI	CCWWGG	4 cut(s)	1443, 1722, 2449, 2838
Esp3I	CGTCTC	1 cut(s)	3217
FaeI	CATG	9 cut(s)	168, 947, 1141, 1769, 2241, 2334, 2409, 3066, 3200
FalI	AAGNNNNNCTT	6 cut(s)	388, 420, 1305, 1337, 1449, 1481
FaqI	GGGAC	6 cut(s)	727, 1015, 1146, 1249, 1821, 2952
FatI	CATG	9 cut(s)	164, 943, 1137, 1765, 2237, 2330, 2405, 3062, 3196
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	2461
FblI	GTMKAC	1 cut(s)	1873
Fnu4HI	GCNGC	6 cut(s)	211, 247, 265, 1461, 2794, 2810
FokI	GGATG	6 cut(s)	47, 2322, 2444, 2714, 2855, 3128
Fsp4HI	GCNGC	6 cut(s)	211, 247, 265, 1461, 2794, 2810
FspBI	CTAG	4 cut(s)	1454, 1841, 1869, 2129
GluI	GCNGC	6 cut(s)	211, 247, 265, 1461, 2794, 2810
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	3036
HaeIII	GGCC	7 cut(s)	323, 729, 921, 1946, 2157, 2335, 2796
HapII	CCGG	5 cut(s)	803, 1143, 2706, 2721, 2880
Hin1II	CATG	9 cut(s)	168, 947, 1141, 1769, 2241, 2334, 2409, 3066, 3200
HincII	GTYRAC	2 cut(s)	1584, 2179
HindII	GTYRAC	2 cut(s)	1584, 2179
HindIII	AAGCTT	4 cut(s)	155, 368, 752, 1370
HpaII	CCGG	5 cut(s)	803, 1143, 2706, 2721, 2880
HphI	GGTGA	7 cut(s)	1028, 1459, 1901, 2390, 2608, 2710, 2815
Hpy166II	GTNNAC	5 cut(s)	73, 1584, 1874, 2179, 3202
Hpy8I	GTNNAC	5 cut(s)	73, 1584, 1874, 2179, 3202
Hpy99I	CGWCG	1 cut(s)	3086
HpyCH4III	ACNGT	3 cut(s)	49, 200, 1279
HpyCH4IV	ACGT	1 cut(s)	3226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 2758
HpySE526I	ACGT	1 cut(s)	3226
Hsp92II	CATG	9 cut(s)	168, 947, 1141, 1769, 2241, 2334, 2409, 3066, 3200
Ksp22I	TGATCA	1 cut(s)	2461
LguI	GCTCTTC	1 cut(s)	1470
LmnI	GCTCC	4 cut(s)	114, 805, 1321, 1744
Lsp1109I	GCAGC	5 cut(s)	222, 258, 276, 1447, 2821
LweI	GCATC	3 cut(s)	484, 2545, 2739
MaeI	CTAG	4 cut(s)	1454, 1841, 1869, 2129
MaeII	ACGT	1 cut(s)	3226
MaeIII	GTNAC	9 cut(s)	202, 653, 1016, 1447, 1715, 1889, 2138, 2921, 3087
MbiI	CCGCTC	1 cut(s)	2793
MfeI	CAATTG	1 cut(s)	1669
MflI	RGATCY	3 cut(s)	888, 2501, 2871
MhlI	GDGCHC	1 cut(s)	179
MlyI	GAGTC	7 cut(s)	260, 335, 749, 856, 1411, 1444, 2026
MmeI	TCCRAC	8 cut(s)	211, 316, 1389, 1533, 2310, 2465, 2568, 2661
MspA1I	CMGCKG	2 cut(s)	2109, 3166
MspCI	CTTAAG	1 cut(s)	1043
MspI	CCGG	5 cut(s)	803, 1143, 2706, 2721, 2880
MspR9I	CCNGG	3 cut(s)	1133, 1144, 2388
MunI	CAATTG	1 cut(s)	1669
MvaI	CCWGG	2 cut(s)	1133, 2388
MwoI	GCNNNNNNNGC	2 cut(s)	183, 2758
NciI	CCSGG	1 cut(s)	1144
NlaIII	CATG	9 cut(s)	168, 947, 1141, 1769, 2241, 2334, 2409, 3066, 3200
NlaIV	GGNNCC	5 cut(s)	807, 949, 1945, 2873, 2940
NmuCI	GTSAC	5 cut(s)	653, 1016, 1447, 1889, 3087
NspI	RCATGY	3 cut(s)	1141, 3066, 3200
PagI	TCATGA	1 cut(s)	1765
PciI	ACATGT	2 cut(s)	1137, 3062
PciSI	GCTCTTC	1 cut(s)	1470
PfeI	GAWTC	7 cut(s)	626, 813, 1590, 1651, 1688, 2435, 2602
PflMI	CCANNNNNTGG	1 cut(s)	971
PfoI	TCCNGGA	1 cut(s)	1142
PkrI	GCNGC	6 cut(s)	212, 248, 266, 1462, 2795, 2811
PleI	GAGTC	7 cut(s)	259, 335, 748, 855, 1410, 1444, 2026
PpsI	GAGTC	7 cut(s)	259, 335, 748, 855, 1410, 1444, 2026
PpuMI	RGGWCCY	1 cut(s)	2939
PscI	ACATGT	2 cut(s)	1137, 3062
Psp5II	RGGWCCY	1 cut(s)	2939
Psp6I	CCWGG	2 cut(s)	1131, 2386
PspEI	GGTNACC	1 cut(s)	1016
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	2 cut(s)	1131, 2386
PspN4I	GGNNCC	5 cut(s)	807, 949, 1945, 2873, 2940
PspPI	GGNCC	7 cut(s)	728, 1354, 1498, 1633, 1944, 2283, 2939
PspPPI	RGGWCCY	1 cut(s)	2939
PstI	CTGCAG	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	3 cut(s)	888, 2501, 2871
PvuII	CAGCTG	1 cut(s)	3166
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SapI	GCTCTTC	1 cut(s)	1470
SatI	GCNGC	6 cut(s)	211, 247, 265, 1461, 2794, 2810
Sau96I	GGNCC	7 cut(s)	728, 1354, 1498, 1633, 1944, 2283, 2939
SchI	GAGTC	7 cut(s)	260, 335, 749, 856, 1411, 1444, 2026
ScrFI	CCNGG	3 cut(s)	1133, 1144, 2388
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	3 cut(s)	484, 2545, 2739
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	5 cut(s)	1354, 1498, 1633, 2283, 2939
SmlI	CTYRAG	7 cut(s)	503, 563, 1043, 1603, 2005, 2185, 2998
SmoI	CTYRAG	7 cut(s)	503, 563, 1043, 1603, 2005, 2185, 2998
SsiI	CCGC	6 cut(s)	66, 2109, 2281, 2752, 2793, 2807
SspI	AATATT	1 cut(s)	3037
SspMI	CTAG	4 cut(s)	1454, 1841, 1869, 2129
StyD4I	CCNGG	3 cut(s)	1131, 1142, 2386
StyI	CCWWGG	4 cut(s)	1443, 1722, 2449, 2838
TaaI	ACNGT	3 cut(s)	49, 200, 1279
TaiI	ACGT	1 cut(s)	3229
TaqI	TCGA	6 cut(s)	173, 512, 982, 1103, 1209, 2916
TaqII	GACCGA	2 cut(s)	1896, 2041
TauI	GCSGC	1 cut(s)	2796
TfiI	GAWTC	7 cut(s)	626, 813, 1590, 1651, 1688, 2435, 2602
TscAI	CASTG	7 cut(s)	52, 529, 687, 1184, 1782, 2380, 3049
TseFI	GTSAC	5 cut(s)	653, 1016, 1447, 1889, 3087
TseI	GCWGC	5 cut(s)	210, 246, 264, 1460, 2809
Tsp45I	GTSAC	5 cut(s)	653, 1016, 1447, 1889, 3087
TspDTI	ATGAA	7 cut(s)	932, 1236, 1349, 1493, 1754, 1778, 1885
TspGWI	ACGGA	1 cut(s)	2664
TspRI	CASTG	7 cut(s)	52, 529, 687, 1184, 1782, 2380, 3049
Van91I	CCANNNNNTGG	1 cut(s)	971
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	5 cut(s)	1354, 1498, 1633, 2283, 2939
XbaI	TCTAGA	3 cut(s)	1453, 1840, 2128
XceI	RCATGY	3 cut(s)	1141, 3066, 3200
XmiI	GTMKAC	1 cut(s)	1873
XspI	CTAG	4 cut(s)	1454, 1841, 1869, 2129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.