Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

33258677 .. 33261236

Gene Structure 2560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAAGATGTTCTCAGCTCAAGTTGAGGAAGGAAGGAAAGGACAGAACGGGAAGCCTTCAGTTGGTCCAGTGTATCGGAATTTACTTTCAAAAAATGATTTTCCACCGCCTCATCCTGAAATAAGAACAGCTTGGGATGTCTTTAGTCAATCTGCTCAAAAGTTTCCTGGAAATAGAATGCTTGGATGGCGTAAAATTGTGGATGGGAAGATAGGACCTTATGTTTGGAAAACCTACAAGGAGGTTTATGAAGAAGTTCTGCTTGTTGGTTCTGCATTACGAGCATCTGGTGTGGAACCTGCTTGCAATGCCCATAGTTTGACCTGTGTGCCTCTCTACGATACCCTAGGGCCAGGAGCTGTAAACTTCATCATAGATCATGCAGAGGTTGATTTTGTTTTCGTCCAAGATAAGAAAGTGAAAGAACTATTCAGTCCTGATTGTACATCTACCCAACGACTAAAAGTTATGGTTTGCTTCACTTCATTGACAGATGAAGAGAAGGATAAAGCAGTGCAGATTGGGATGAAACCGTACTCATGGAGTGAATTCACTGAGATGGGAAAACAAAACCCGTCAGATATTTTTCCACCTCAGCCTGAAACTATCTGTGCAATTATGTACACAAGTGGTACTAGTGGAGATCCTAAAGGTGTTGTGCTAACACATGAAAACACCGCATATGGTGTGAGAGGGATTGACCTCTTTATGGAACAATTTGAAGATAAGATGACAGTGGATGATGTGTATCTATCTTTCCTTCCCCTGGCTCATATTCTGGATCGCATAATTGAGGAGTATTTTTTTCGCACTGGTGCTTCTGTTGGCTACTATCATGGAGATCTTAATGCATTGAGTGATGATATGATGGAGTTGAAGCCAACACTTCTTGCTGGAGTACCTCGTGTTTTCGAAAGAATACATGAAGGCATGAAAATACTTGCTTGTCATCTATCTGCAAATATATTTATCTTGTGGATTTGTTATGGACTTACAATCCAAAATCATTTAGGTATAAAGCAAGCAGTGCAACAGCTCAATCCCAGGAGGCAGAAGATTTTTGACATTCTCTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

359

Amino Acids

40.56

Weight (kDa)

6.02

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	101 - 309	6.4e-38	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	2 cut(s)	107, 678
AclWI	GGATC	2 cut(s)	638, 789
AcsI	RAATTY	2 cut(s)	79, 548
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	5 cut(s)	445, 536, 623, 634, 900
AfiI	CCNNNNNNNGG	3 cut(s)	62, 709, 766
AgsI	TTSAA	3 cut(s)	90, 722, 877
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	4 cut(s)	166, 352, 765, 1043
AluBI	AGCT	4 cut(s)	17, 131, 359, 1036
AluI	AGCT	4 cut(s)	17, 131, 359, 1036
AlwI	GGATC	2 cut(s)	638, 789
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	79, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
Asp700I	GAANNNNTTC	2 cut(s)	8, 255
AspA2I	CCTAGG	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	65, 215, 350
AsuII	TTCGAA	1 cut(s)	912
AvaII	GGWCC	2 cut(s)	65, 215
AvrII	CCTAGG	1 cut(s)	346
BauI	CACGAG	1 cut(s)	903
BbvCI	CCTCAGC	1 cut(s)	594
BccI	CCATC	4 cut(s)	180, 197, 553, 862
BciT130I	CCWGG	4 cut(s)	168, 354, 767, 1045
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	2 cut(s)	347, 636
BfuAI	ACCTGC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	841
BlnI	CCTAGG	1 cut(s)	346
Bme1390I	CCNGG	4 cut(s)	168, 354, 767, 1045
Bme18I	GGWCC	2 cut(s)	65, 215
BmgT120I	GGNCC	3 cut(s)	65, 215, 350
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	4 cut(s)	168, 354, 767, 1045
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	3 cut(s)	346, 765, 1043
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 709, 766
Bse1I	ACTGG	2 cut(s)	68, 817
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	4 cut(s)	168, 354, 767, 1045
BseDI	CCNNGG	3 cut(s)	346, 765, 1043
BseGI	GGATG	6 cut(s)	112, 142, 191, 208, 531, 745
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	62, 709, 766
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	27, 546, 608
BseNI	ACTGG	2 cut(s)	68, 817
BseRI	GAGGAG	1 cut(s)	809
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	62, 709, 766
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	912
Bsp1407I	TGTACA	2 cut(s)	443, 621
Bsp143I	GATC	4 cut(s)	376, 643, 781, 841
BspACI	CCGC	2 cut(s)	107, 678
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	3 cut(s)	26, 547, 607
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	638, 789
BspT104I	TTCGAA	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	313
BsrGI	TGTACA	2 cut(s)	443, 621
BsrI	ACTGG	2 cut(s)	68, 817
BssECI	CCNNGG	3 cut(s)	346, 765, 1043
BssMI	GATC	4 cut(s)	376, 643, 781, 841
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	903
Bst2UI	CCWGG	4 cut(s)	168, 354, 767, 1045
Bst4CI	ACNGT	2 cut(s)	534, 736
Bst6I	CTCTTC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	1027
BstAUI	TGTACA	2 cut(s)	443, 621
BstBI	TTCGAA	1 cut(s)	912
BstC8I	GCNNGC	2 cut(s)	304, 1023
BstDEI	CTNAG	3 cut(s)	13, 555, 594
BstF5I	GGATG	6 cut(s)	112, 142, 191, 208, 531, 745
BstKTI	GATC	4 cut(s)	379, 646, 784, 844
BstMBI	GATC	4 cut(s)	376, 643, 781, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 281, 308, 1027
BstNI	CCWGG	4 cut(s)	168, 354, 767, 1045
BstSCI	CCNGG	4 cut(s)	166, 352, 765, 1043
BstX2I	RGATCY	2 cut(s)	643, 841
BstYI	RGATCY	2 cut(s)	643, 841
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	6 cut(s)	112, 142, 191, 208, 531, 745
BtsI	GCAGTG	2 cut(s)	519, 1032
BtsIMutI	CAGTG	6 cut(s)	75, 519, 552, 741, 810, 1032
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	304, 1023
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	65, 215, 350
Csp6I	GTAC	5 cut(s)	444, 535, 622, 633, 899
CviAII	CATG	6 cut(s)	380, 540, 668, 836, 923, 931
CviQI	GTAC	5 cut(s)	444, 535, 622, 633, 899
DdeI	CTNAG	3 cut(s)	13, 555, 594
DpnI	GATC	4 cut(s)	378, 645, 783, 843
DpnII	GATC	4 cut(s)	376, 643, 781, 841
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	65, 215
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	166, 352, 765, 1043
EcoT14I	CCWWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	6 cut(s)	383, 543, 671, 839, 926, 934
FalI	AAGNNNNNCTT	4 cut(s)	115, 147, 246, 278
FatI	CATG	6 cut(s)	379, 539, 667, 835, 922, 930
FauNDI	CATATG	1 cut(s)	682
FokI	GGATG	6 cut(s)	99, 149, 198, 215, 538, 752
FspBI	CTAG	2 cut(s)	347, 636
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	383, 543, 671, 839, 926, 934
Hpy166II	GTNNAC	2 cut(s)	364, 624
Hpy188I	TCNGA	2 cut(s)	78, 580
Hpy188III	TCNNGA	3 cut(s)	116, 437, 779
Hpy8I	GTNNAC	2 cut(s)	364, 624
HpyAV	CCTTC	6 cut(s)	23, 27, 66, 496, 770, 920
HpyCH4III	ACNGT	2 cut(s)	534, 736
HpyCH4V	TGCA	8 cut(s)	275, 306, 383, 517, 614, 851, 959, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 281, 308, 1027
HpyF3I	CTNAG	3 cut(s)	13, 555, 594
Hsp92II	CATG	6 cut(s)	383, 543, 671, 839, 926, 934
Kzo9I	GATC	4 cut(s)	376, 643, 781, 841
LmnI	GCTCC	1 cut(s)	356
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	2 cut(s)	347, 636
MalI	GATC	4 cut(s)	378, 645, 783, 843
MboI	GATC	4 cut(s)	376, 643, 781, 841
MboII	GAAGA	6 cut(s)	16, 220, 263, 509, 734, 1066
MflI	RGATCY	2 cut(s)	643, 841
MluCI	AATT	6 cut(s)	79, 195, 548, 615, 716, 789
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	2 cut(s)	8, 255
MseI	TTAA	1 cut(s)	846
MslI	CAYNNNNRTG	1 cut(s)	557
MspR9I	CCNGG	4 cut(s)	168, 354, 767, 1045
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	4 cut(s)	168, 354, 767, 1045
MwoI	GCNNNNNNNGC	4 cut(s)	187, 281, 308, 1027
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	376, 643, 781, 841
NlaIII	CATG	6 cut(s)	383, 543, 671, 839, 926, 934
NlaIV	GGNNCC	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	853
NspV	TTCGAA	1 cut(s)	912
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	8, 255
PfoI	TCCNGGA	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	4 cut(s)	166, 352, 765, 1043
PspGI	CCWGG	4 cut(s)	166, 352, 765, 1043
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	65, 215, 350
PspPPI	RGGWCCY	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	643, 841
RsaI	GTAC	5 cut(s)	445, 536, 623, 634, 900
RsaNI	GTAC	5 cut(s)	444, 535, 622, 633, 899
RseI	CAYNNNNRTG	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	846
Sau3AI	GATC	4 cut(s)	376, 643, 781, 841
Sau96I	GGNCC	3 cut(s)	65, 215, 350
ScrFI	CCNGG	4 cut(s)	168, 354, 767, 1045
SfaNI	GCATC	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	912
SinI	GGWCC	2 cut(s)	65, 215
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	6 cut(s)	79, 195, 548, 615, 716, 789
SsiI	CCGC	2 cut(s)	107, 678
SspMI	CTAG	2 cut(s)	347, 636
StyD4I	CCNGG	4 cut(s)	166, 352, 765, 1043
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	534, 736
TaqI	TCGA	1 cut(s)	912
TasI	AATT	6 cut(s)	79, 195, 548, 615, 716, 789
TatI	WGTACW	2 cut(s)	443, 621
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	6 cut(s)	75, 519, 559, 741, 817, 1032
TspDTI	ATGAA	9 cut(s)	17, 264, 358, 474, 510, 542, 684, 939, 947
TspRI	CASTG	6 cut(s)	75, 519, 559, 741, 817, 1032
VpaK11BI	GGWCC	2 cut(s)	65, 215
XapI	RAATTY	2 cut(s)	79, 548
XmaJI	CCTAGG	1 cut(s)	346
XmnI	GAANNNNTTC	2 cut(s)	8, 255
XspI	CTAG	2 cut(s)	347, 636
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.