Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003078

Physical Location & Seq

Genomic Coordinates Forward (+)

33291561 .. 33294350

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGATTTTCTCTGCTCAAGTTGAGGAAGGAAGGGAAGGCCAGAATGGCAAGCCTTCCGTTGGTCCGGTATACCGGAATTTACTGTCCAAAAACAATTTTCCTCCACCTCATCCCGATATAAGTACAGGCTGGGATCTCATTAGTCAATCTGCTCAGAAGTATCCTGGAAATCGAATGCTTGGATGGCGTAAAATAGTTGATGGAAAGATTGGACCTTACGTTTGGAAAACATACAAGGAGTTTTATGACGAACTTCTTCTTGTTGGTTCTGCATTACGAGCATCTGGTGTGGAACCAGGAATTCAAAACCCATCAAAGATCTTTCCACCTCTGCCTGAGAATATCAGCACAATTATGTACACAAGTGGTACCAGTGGAGCTCCTAAAGGTGTTGTGATAACACATGAAAACATGGCATATGGTGTCAGAGGCATTGACCTCTTTTTGGAACAATTTGAAGACAAGATGACAGTGGATGATGTGTATCTATCTTTCCTTCCTCTGGCTCATATCCTGGACTGCGTAATTGAGATGTATTTTTTCCGCAATGGTGCTTCTGTTGGCTACTATCATGGGGATCTTAATGCATTAGGGGATGATATAATGGAGTTGAAGCCAACACTTCTTGCTGGGGTACCTCGAGTCTTCGAGAAAATACATGAAGGTATAAAGAAAGGAGTCCAACAGCTCAATCCAAGGAGGCAGAAGATTTTTGACATTCTCTACAGATACAAACTTGCTTGGATGAACATGGGGTTTAAAAACAAGAACGCCTCACCACTCGCTGATCTGTTAGCCTTCAGAAAGGTTGCATCTTCTCCTCAACACAAAAGGACCATAATACAAACTTTCTATTACAGTATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010025 GO:0010143 GO:0010166 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0031957 GO:0032787 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

9.14

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	110 - 228	2.6e-29	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47240 AT2G47240 AT2G47240 AT2G47240 AT2G47245
fragaria_vesca	FvH4_1g26810 FvH4_1g26810 FvH4_1g26810 FvH4_1g26850 FvH4_1g26850 FvH4_1g26850
malus_domestica	MD09G1286100.v1.1
prunus_persica	Prupe.3G007200_v2.0.a1
pyrus_communis	pycom09g19340
rosa_chinensis	RchiOBHm_Chr3g0487031 RchiOBHm_Chr3g0487091
rosa_laevigata	RLG00000023034 RLG00000023036
rosa_multiflora	Rmu_sc0005856.1_g000028
rosa_roxburghii	Rroxscaffold_6G00395190 Rroxscaffold_6G00395220
rosa_rugosa	Rorug03G0230300 Rorug03G0230500 Rorug03G0230600 Rorug03G0230700 Rorug03G0230800 Rorug03G0230900
rosa_samantha	Rh3AG278900 Rh3AG279200 Rh3BG315100 Rh3CG313100 Rh3CG313200 Rh3DG309800 Rh3DG310100
rosa_wichuraiana	Rw0G017060 Rw3G024720 Rw3G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	371, 637
AccB1I	GGYRCC	2 cut(s)	371, 637
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	1 cut(s)	547
AclWI	GGATC	2 cut(s)	144, 588
AcsI	RAATTY	2 cut(s)	79, 303
AcuI	CTGAAG	1 cut(s)	787
AfaI	GTAC	4 cut(s)	127, 362, 373, 639
AfiI	CCNNNNNNNGG	3 cut(s)	62, 448, 505
AgsI	TTSAA	3 cut(s)	308, 461, 616
AjnI	CCWGG	3 cut(s)	166, 298, 516
AluBI	AGCT	2 cut(s)	383, 691
AluI	AGCT	2 cut(s)	383, 691
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	144, 588
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	79, 303
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
Asp700I	GAANNNNTTC	2 cut(s)	8, 258
Asp718I	GGTACC	2 cut(s)	371, 637
AspS9I	GGNCC	3 cut(s)	65, 215, 837
AsuHPI	GGTGA	1 cut(s)	771
AvaI	CYCGRG	1 cut(s)	642
AvaII	GGWCC	3 cut(s)	65, 215, 837
BanI	GGYRCC	2 cut(s)	371, 637
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	468, 640
Bbv12I	GWGCWC	1 cut(s)	385
BccI	CCATC	3 cut(s)	180, 197, 322
BciT130I	CCWGG	3 cut(s)	168, 300, 518
BciVI	GTATCC	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	727
BfuI	GTATCC	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	168, 300, 518
Bme18I	GGWCC	3 cut(s)	65, 215, 837
BmeT110I	CYCGRG	1 cut(s)	642
BmgT120I	GGNCC	3 cut(s)	65, 215, 837
BmiI	GGNNCC	3 cut(s)	297, 373, 639
BmrFI	CCNGG	3 cut(s)	168, 300, 518
BmsI	GCATC	2 cut(s)	293, 824
BpiI	GAAGAC	2 cut(s)	468, 640
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	698
BsaWI	WCCGGW	2 cut(s)	67, 75
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 448, 505
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	168, 300, 518
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	5 cut(s)	112, 191, 484, 604, 753
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	62, 448, 505
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	170, 330
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	813
BseYI	CCCAGC	2 cut(s)	132, 632
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	2 cut(s)	371, 637
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	68, 76
BslI	CCNNNNNNNGG	3 cut(s)	62, 448, 505
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	136, 321, 580, 790
BspACI	CCGC	1 cut(s)	547
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	169, 331
BspLI	GGNNCC	3 cut(s)	297, 373, 639
BspPI	GGATC	2 cut(s)	144, 588
BspT107I	GGYRCC	2 cut(s)	371, 637
BsrDI	GCAATG	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	4 cut(s)	136, 321, 580, 790
BssNAI	GTATAC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	168, 300, 518
Bst4CI	ACNGT	3 cut(s)	87, 475, 863
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	156, 339
BstF5I	GGATG	5 cut(s)	112, 191, 484, 604, 753
BstKTI	GATC	4 cut(s)	139, 324, 583, 793
BstMBI	GATC	4 cut(s)	136, 321, 580, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 187, 281
BstNI	CCWGG	3 cut(s)	168, 300, 518
BstSCI	CCNGG	3 cut(s)	166, 298, 516
BstSFI	CTRYAG	1 cut(s)	727
BstV2I	GAAGAC	2 cut(s)	468, 640
BstX2I	RGATCY	3 cut(s)	136, 321, 580
BstYI	RGATCY	3 cut(s)	136, 321, 580
BstZ17I	GTATAC	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	112, 191, 484, 604, 753
BtsIMutI	CAGTG	2 cut(s)	382, 480
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	65, 215, 837
Csp6I	GTAC	4 cut(s)	126, 361, 372, 638
CviAII	CATG	5 cut(s)	407, 415, 575, 662, 754
CviJI	RGCY	9 cut(s)	42, 55, 132, 383, 509, 567, 619, 691, 800
CviKI_1	RGCY	9 cut(s)	42, 55, 132, 383, 509, 567, 619, 691, 800
CviQI	GTAC	4 cut(s)	126, 361, 372, 638
DdeI	CTNAG	2 cut(s)	156, 339
DpnI	GATC	4 cut(s)	138, 323, 582, 792
DpnII	GATC	4 cut(s)	136, 321, 580, 790
DraI	TTTAAA	1 cut(s)	763
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	65, 215, 837
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	787
Eco88I	CYCGRG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	166, 298, 516
EcoT14I	CCWWGG	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	5 cut(s)	410, 418, 578, 665, 757
FatI	CATG	5 cut(s)	406, 414, 574, 661, 753
FauNDI	CATATG	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	5 cut(s)	99, 198, 491, 611, 760
FriOI	GRGCYC	1 cut(s)	385
GsaI	CCCAGC	2 cut(s)	136, 636
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	68, 76
Hin1II	CATG	5 cut(s)	410, 418, 578, 665, 757
HinfI	GANTC	2 cut(s)	645, 681
HpaII	CCGG	2 cut(s)	68, 76
HphI	GGTGA	1 cut(s)	771
Hpy166II	GTNNAC	2 cut(s)	73, 363
Hpy188I	TCNGA	3 cut(s)	159, 431, 806
Hpy188III	TCNNGA	2 cut(s)	116, 652
Hpy8I	GTNNAC	2 cut(s)	73, 363
HpyAV	CCTTC	7 cut(s)	23, 27, 32, 66, 509, 659, 811
HpyCH4III	ACNGT	3 cut(s)	87, 475, 863
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	275, 590, 815, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 187, 281
HpyF3I	CTNAG	2 cut(s)	156, 339
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	410, 418, 578, 665, 757
KpnI	GGTACC	2 cut(s)	375, 641
Kzo9I	GATC	4 cut(s)	136, 321, 580, 790
LmnI	GCTCC	2 cut(s)	380, 388
LweI	GCATC	2 cut(s)	293, 824
MaeII	ACGT	1 cut(s)	222
MalI	GATC	4 cut(s)	138, 323, 582, 792
MboI	GATC	4 cut(s)	136, 321, 580, 790
MboII	GAAGA	6 cut(s)	16, 251, 473, 640, 721, 810
MflI	RGATCY	3 cut(s)	136, 321, 580
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	6 cut(s)	79, 97, 303, 354, 455, 528
MlyI	GAGTC	2 cut(s)	654, 690
MmeI	TCCRAC	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	2 cut(s)	8, 258
MseI	TTAA	2 cut(s)	585, 762
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	68, 76
MspR9I	CCNGG	3 cut(s)	168, 300, 518
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	3 cut(s)	168, 300, 518
MwoI	GCNNNNNNNGC	3 cut(s)	48, 187, 281
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	4 cut(s)	136, 321, 580, 790
NlaIII	CATG	5 cut(s)	410, 418, 578, 665, 757
NlaIV	GGNNCC	3 cut(s)	297, 373, 639
NsiI	ATGCAT	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	642
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	8, 258
PfoI	TCCNGGA	2 cut(s)	166, 516
PleI	GAGTC	2 cut(s)	653, 689
PpsI	GAGTC	2 cut(s)	653, 689
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	166, 298, 516
PspFI	CCCAGC	2 cut(s)	132, 632
PspGI	CCWGG	3 cut(s)	166, 298, 516
PspN4I	GGNNCC	3 cut(s)	297, 373, 639
PspPI	GGNCC	3 cut(s)	65, 215, 837
PspXI	VCTCGAGB	1 cut(s)	642
PsuI	RGATCY	3 cut(s)	136, 321, 580
RsaI	GTAC	4 cut(s)	127, 362, 373, 639
RsaNI	GTAC	4 cut(s)	126, 361, 372, 638
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	585, 762
Sau3AI	GATC	4 cut(s)	136, 321, 580, 790
Sau96I	GGNCC	3 cut(s)	65, 215, 837
SchI	GAGTC	2 cut(s)	654, 690
ScrFI	CCNGG	3 cut(s)	168, 300, 518
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	2 cut(s)	293, 824
SfcI	CTRYAG	1 cut(s)	727
Sfr274I	CTCGAG	1 cut(s)	642
SinI	GGWCC	3 cut(s)	65, 215, 837
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	18, 642
SmoI	CTYRAG	2 cut(s)	18, 642
Sse9I	AATT	6 cut(s)	79, 97, 303, 354, 455, 528
SsiI	CCGC	1 cut(s)	547
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	3 cut(s)	166, 298, 516
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	3 cut(s)	87, 475, 863
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	175, 643, 651
TasI	AATT	6 cut(s)	79, 97, 303, 354, 455, 528
TatI	WGTACW	2 cut(s)	125, 360
Tru1I	TTAA	2 cut(s)	585, 762
Tru9I	TTAA	2 cut(s)	585, 762
TscAI	CASTG	2 cut(s)	382, 480
TspDTI	ATGAA	4 cut(s)	17, 423, 678, 764
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	2 cut(s)	382, 480
VpaK11BI	GGWCC	3 cut(s)	65, 215, 837
XapI	RAATTY	2 cut(s)	79, 303
XhoI	CTCGAG	1 cut(s)	642
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	2 cut(s)	8, 258
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.