AT2G47460
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19476326 .. 19479597
3272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47460.1

Sequence Viewer

Length: 1116 bp
ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAAGCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACAGACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTCTCAAGACGTCTCCGCCGTAATCATGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGCAAAACGCAGACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAAAACTCGTAAAACGAAGAAAACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGGGGCTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCTGAGCTAGGACGACCATGTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAGTTTTAACGTTTGATGATGATATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACTTGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAGGAGCCAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTTGTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAACGATGCGTCGACGGATGAGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGAAAGAGAATCCCGACTCAATGGTCTCGTGGCTTTTAGACGGTGATGATGAGGCCACGATCGGGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGGTCGCTTGGCTTCTGTCATGA

Protein Analysis

371

Amino Acids

41.39

Weight (kDa)

5.06

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 995
AatII GACGTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 908
AccII CGCG 1 cut(s) 278
AciI CCGC 9 cut(s) 46, 56, 278, 390, 425, 428, 431, 468, 756
AclI AACGTT 1 cut(s) 683
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 3 cut(s) 399, 813, 833
AcyI GRCGYC 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 753
AfaI GTAC 1 cut(s) 740
AfeI AGCGCT 1 cut(s) 1090
AfiI CCNNNNNNNGG 1 cut(s) 1035
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 2 cut(s) 289, 727
AluBI AGCT 3 cut(s) 156, 551, 604
AluI AGCT 3 cut(s) 156, 551, 604
Alw26I GTCTC 3 cut(s) 391, 780, 1003
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 728
Aor51HI AGCGCT 1 cut(s) 1090
AoxI GGCC 2 cut(s) 730, 1026
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AseI ATTAAT 2 cut(s) 572, 660
AspLEI GCGC 3 cut(s) 13, 421, 1091
AspS9I GGNCC 2 cut(s) 64, 465
AsuHPI GGTGA 3 cut(s) 110, 773, 1028
AvaII GGWCC 2 cut(s) 64, 465
BalI TGGCCA 1 cut(s) 732
BauI CACGAG 1 cut(s) 1000
BbsI GAAGAC 1 cut(s) 836
BccI CCATC 5 cut(s) 162, 376, 380, 758, 868
BceAI ACGGC 3 cut(s) 69, 324, 377
BciT130I CCWGG 2 cut(s) 291, 729
BciVI GTATCC 1 cut(s) 808
BcoDI GTCTC 3 cut(s) 391, 780, 1003
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 3 cut(s) 14, 422, 1092
BfuI GTATCC 1 cut(s) 808
BglII AGATCT 1 cut(s) 113
BisI GCNGC 2 cut(s) 428, 431
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 2 cut(s) 429, 432
Bme1390I CCNGG 2 cut(s) 291, 729
Bme18I GGWCC 2 cut(s) 64, 465
BmgT120I GGNCC 2 cut(s) 64, 465
BmiI GGNNCC 4 cut(s) 534, 592, 799, 824
BmrFI CCNGG 2 cut(s) 291, 729
BmsI GCATC 1 cut(s) 892
BpiI GAAGAC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 179, 363
Bsa29I ATCGAT 2 cut(s) 702, 924
BsaBI GATNNNNATC 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 1003
BsaJI CCNNGG 3 cut(s) 290, 594, 826
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 1035
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 2 cut(s) 291, 729
BseCI ATCGAT 2 cut(s) 702, 924
BseDI CCNNGG 3 cut(s) 290, 594, 826
BseGI GGATG 2 cut(s) 368, 919
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 1 cut(s) 1035
BseMII CTCAG 2 cut(s) 349, 591
BseRI GAGGAG 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 1035
BshFI GGCC 2 cut(s) 732, 1028
BshVI ATCGAT 2 cut(s) 702, 924
BsiEI CGRYCG 1 cut(s) 1035
BsiSI CCGG 2 cut(s) 132, 530
BslI CCNNNNNNNGG 1 cut(s) 1035
BsmAI GTCTC 3 cut(s) 391, 780, 1003
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 732, 1028
Bso31I GGTCTC 1 cut(s) 1003
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
Bsp1720I GCTNAGC 1 cut(s) 600
BspACI CCGC 9 cut(s) 46, 56, 278, 390, 425, 428, 431, 468, 756
BspANI GGCC 2 cut(s) 732, 1028
BspCNI CTCAG 2 cut(s) 348, 592
BspDI ATCGAT 2 cut(s) 702, 924
BspFNI CGCG 1 cut(s) 278
BspHI TCATGA 4 cut(s) 399, 651, 1075, 1112
BspLI GGNNCC 4 cut(s) 534, 592, 799, 824
BspPI GGATC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 1003
BsrGI TGTACA 1 cut(s) 738
BssECI CCNNGG 3 cut(s) 290, 594, 826
BssMI GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
BssNI GRCGYC 1 cut(s) 384
BssSI CACGAG 1 cut(s) 1000
BssT1I CCWWGG 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 1000
Bst2UI CCWGG 2 cut(s) 291, 729
Bst4CI ACNGT 4 cut(s) 98, 842, 1016, 1068
BstACI GRCGYC 1 cut(s) 384
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 3 cut(s) 182, 335, 600
BstF5I GGATG 2 cut(s) 368, 919
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 3 cut(s) 14, 422, 1092
BstHHI GCGC 3 cut(s) 13, 421, 1091
BstKTI GATC 6 cut(s) 116, 188, 706, 727, 1035, 1075
BstMAI GTCTC 3 cut(s) 391, 780, 1003
BstMBI GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
BstMCI CGRYCG 1 cut(s) 1035
BstMWI GCNNNNNNNGC 5 cut(s) 416, 427, 548, 663, 1097
BstNI CCWGG 2 cut(s) 291, 729
BstSCI CCNGG 2 cut(s) 289, 727
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 836
BstX2I RGATCY 2 cut(s) 113, 724
BstYI RGATCY 2 cut(s) 113, 724
Bsu15I ATCGAT 2 cut(s) 702, 924
BsuI GTATCC 1 cut(s) 808
BsuRI GGCC 2 cut(s) 732, 1028
BsuTUI ATCGAT 2 cut(s) 702, 924
BtsCI GGATG 2 cut(s) 368, 919
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 728
CciI TCATGA 4 cut(s) 399, 651, 1075, 1112
CfoI GCGC 3 cut(s) 13, 421, 1091
Cfr13I GGNCC 2 cut(s) 64, 465
ClaI ATCGAT 2 cut(s) 702, 924
CseI GACGC 1 cut(s) 894
Csp6I GTAC 1 cut(s) 739
CviAII CATG 7 cut(s) 15, 400, 615, 652, 971, 1076, 1113
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 3 cut(s) 182, 335, 600
DpnI GATC 6 cut(s) 115, 187, 705, 726, 1034, 1074
DpnII GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
DraIII CACNNNGTG 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 995
DseDI GACNNNNNNGTC 1 cut(s) 995
EaeI YGGCCR 1 cut(s) 730
EciI GGCGGA 2 cut(s) 71, 379
Eco130I CCWWGG 1 cut(s) 826
Eco31I GGTCTC 1 cut(s) 1003
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 2 cut(s) 64, 465
Eco47III AGCGCT 1 cut(s) 1090
Eco57I CTGAAG 3 cut(s) 399, 813, 833
EcoRII CCWGG 2 cut(s) 289, 727
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 7 cut(s) 18, 403, 618, 655, 974, 1079, 1116
FatI CATG 7 cut(s) 14, 399, 614, 651, 970, 1075, 1112
FauI CCCGC 1 cut(s) 271
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 2 cut(s) 428, 431
FokI GGATG 2 cut(s) 355, 926
Fsp4HI GCNGC 2 cut(s) 428, 431
FspBI CTAG 1 cut(s) 605
GlaI GCGC 3 cut(s) 12, 420, 1090
GluI GCNGC 2 cut(s) 428, 431
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 3 cut(s) 14, 422, 1092
HaeIII GGCC 2 cut(s) 732, 1028
HapII CCGG 2 cut(s) 132, 530
HgaI GACGC 1 cut(s) 894
HhaI GCGC 3 cut(s) 13, 421, 1091
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 7 cut(s) 18, 403, 618, 655, 974, 1079, 1116
Hin6I GCGC 3 cut(s) 11, 419, 1089
HinP1I GCGC 3 cut(s) 11, 419, 1089
HincII GTYRAC 2 cut(s) 898, 909
HindII GTYRAC 2 cut(s) 898, 909
HinfI GANTC 8 cut(s) 70, 581, 719, 788, 832, 869, 982, 989
HpaI GTTAAC 1 cut(s) 898
HpaII CCGG 2 cut(s) 132, 530
HphI GGTGA 3 cut(s) 110, 773, 1028
Hpy166II GTNNAC 5 cut(s) 51, 344, 741, 898, 909
Hpy188I TCNGA 4 cut(s) 190, 724, 793, 814
Hpy8I GTNNAC 5 cut(s) 51, 344, 741, 898, 909
Hpy99I CGWCG 3 cut(s) 910, 913, 1085
HpyAV CCTTC 4 cut(s) 19, 95, 788, 941
HpyCH4III ACNGT 4 cut(s) 98, 842, 1016, 1068
HpyCH4IV ACGT 4 cut(s) 384, 518, 683, 752
HpyCH4V TGCA 3 cut(s) 244, 524, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 427, 548, 663, 1097
HpyF3I CTNAG 3 cut(s) 182, 335, 600
HpySE526I ACGT 4 cut(s) 384, 518, 683, 752
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 7 cut(s) 18, 403, 618, 655, 974, 1079, 1116
HspAI GCGC 3 cut(s) 11, 419, 1089
KspAI GTTAAC 1 cut(s) 898
Kzo9I GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
LmnI GCTCC 3 cut(s) 532, 590, 797
LweI GCATC 1 cut(s) 892
MaeI CTAG 1 cut(s) 605
MaeII ACGT 4 cut(s) 384, 518, 683, 752
MaeIII GTNAC 3 cut(s) 267, 617, 638
MalI GATC 6 cut(s) 115, 187, 705, 726, 1034, 1074
MboI GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
MboII GAAGA 8 cut(s) 18, 230, 233, 236, 405, 523, 836, 839
MflI RGATCY 2 cut(s) 113, 724
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 3 cut(s) 239, 316, 1045
MluNI TGGCCA 1 cut(s) 732
MlyI GAGTC 5 cut(s) 590, 728, 782, 878, 983
MmeI TCCRAC 3 cut(s) 102, 117, 693
MnlI CCTC 7 cut(s) 35, 52, 55, 203, 589, 797, 1018
Mox20I TGGCCA 1 cut(s) 732
MscI TGGCCA 1 cut(s) 732
MseI TTAA 6 cut(s) 137, 237, 572, 660, 680, 897
Msp20I TGGCCA 1 cut(s) 732
MspI CCGG 2 cut(s) 132, 530
MspR9I CCNGG 2 cut(s) 291, 729
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 291, 729
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 5 cut(s) 416, 427, 548, 663, 1097
NdeII GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
NlaIII CATG 7 cut(s) 18, 403, 618, 655, 974, 1079, 1116
NlaIV GGNNCC 4 cut(s) 534, 592, 799, 824
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 2 cut(s) 267, 617
PagI TCATGA 4 cut(s) 399, 651, 1075, 1112
PcsI WCGNNNNNNNCGW 3 cut(s) 390, 515, 869
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 70, 832, 982
PkrI GCNGC 2 cut(s) 429, 432
Ple19I CGATCG 1 cut(s) 1035
PleI GAGTC 5 cut(s) 589, 727, 782, 877, 983
PpsI GAGTC 5 cut(s) 589, 727, 782, 877, 983
PshBI ATTAAT 2 cut(s) 572, 660
Psp1406I AACGTT 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 289, 727
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 289, 727
PspN4I GGNNCC 4 cut(s) 534, 592, 799, 824
PspPI GGNCC 2 cut(s) 64, 465
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 2 cut(s) 113, 724
PvuI CGATCG 1 cut(s) 1035
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SalI GTCGAC 1 cut(s) 907
SaqAI TTAA 6 cut(s) 137, 237, 572, 660, 680, 897
SatI GCNGC 2 cut(s) 428, 431
Sau3AI GATC 6 cut(s) 113, 185, 703, 724, 1032, 1072
Sau96I GGNCC 2 cut(s) 64, 465
SchI GAGTC 5 cut(s) 590, 728, 782, 878, 983
ScrFI CCNGG 2 cut(s) 291, 729
SfaNI GCATC 1 cut(s) 892
SfcI CTRYAG 1 cut(s) 157
SgrDI CGTCGACG 1 cut(s) 907
SinI GGWCC 2 cut(s) 64, 465
SmlI CTYRAG 2 cut(s) 194, 378
SmoI CTYRAG 2 cut(s) 194, 378
Sse9I AATT 3 cut(s) 239, 316, 1045
SsiI CCGC 9 cut(s) 46, 56, 278, 390, 425, 428, 431, 468, 756
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 289, 727
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 4 cut(s) 98, 842, 1016, 1068
TaiI ACGT 4 cut(s) 387, 521, 686, 755
TaqI TCGA 4 cut(s) 702, 837, 908, 924
TasI AATT 3 cut(s) 239, 316, 1045
TatI WGTACW 1 cut(s) 738
TauI GCSGC 2 cut(s) 430, 433
TfiI GAWTC 3 cut(s) 70, 832, 982
Tru1I TTAA 6 cut(s) 137, 237, 572, 660, 680, 897
Tru9I TTAA 6 cut(s) 137, 237, 572, 660, 680, 897
TseFI GTSAC 2 cut(s) 267, 617
Tsp45I GTSAC 2 cut(s) 267, 617
TspDTI ATGAA 2 cut(s) 346, 488
TspGWI ACGGA 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 64, 465
VspI ATTAAT 2 cut(s) 572, 660
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 1 cut(s) 605
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.