MD11G1316800.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
42854804 .. 42859365
4562 bp
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UTR
Exon/CDS
Intron
MD11G1316800.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGGGGAGGGCGCCGTGCTGTGAGAAAGTTGGTCTCAAGAAGGGAAGGTGGACTGCGGACGAGGATGAAATCTTACTCAGTTATATCCAGGCCAATGGGGAAGGCTCCTGGAGGTCTTTACCCAAGAATGCTGGGTTGCTGCGGTGTGGTAAGAGTTGCAGATTGAGATGGATAAACTATCTGAGAGCTGACTTAAAGAGAGGAAATATTTCTTCTCAAGAGGAAGATGTCATCATAAAATTGCATGCTTCTTTGGGTAATAGGTGGTCTTTGATAGCGAGTCAATTACCAGGAAGAACCGATAATGACATAAAGAACTACTGGAATTCTCACTTGAGCAGGAAAATTGACACCTTCAGGAGGCACACCACCTCAACCGCCATTACTACTGAAATCAGCACCAGTTCCCTACCAGCTGGTCATGAAGTTTCGGCAGCTATGGAATTAGGCCCTCCCCCTCCCAAAAGAAGAGGTGGCAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAACCTACTCGACCACCAAACCCAAAGGCCTCGAGGCCCGGCTGAGCCAGAGCCACCACAAAGACGTTAATGTTTCTGCTGCTGCTGATGATGATCGTTTAAATAATGTCCACGAGGCAACTGCCTTGCCTACTGAAAATAATAATAAAACCGTGGACACCATGCAAGACGATTACGTGCTACTAATTGAGGCCCCGGACCAGCAGCAGGAAACTGGAGGTGGAGGAATATCAATGATGGCAACGGTCATTGATCATCAGAAAGAAACTGATGGCGGAAAACTAACTTTAGGACCACATCCACTTGTACACGACGATGGTGATATGAATGAATCTGTCGGCATTGATGGAGGGTTGTTGGGGTTTACTGACTACTTGATGGACGATATTAATGAGGACGAGATACTGGATCCAAATGGTGTTTTGGCTTTAAGTGCAAGTGAAATAAACATTCATCAAGATGCTGATCATTTTACGGACGCGGATCATCATCAGGACACAGAATTACCATCGTCATGTGACCAATTAGTCATGTGTCCAAATAAAATTATGATGACAACGACGACTACTACTACTACGGCAGCCAGTGATGATCATCACGATCAGGAGCAAGAGAGCAGAAGCTGCGGTGGTAATTTTTGCTCGTTGTCGATCTCAAACTCAAACGGACAAGTTGTCACGGGAGACTTGCATTCATGCGGCTCTTCGATGTCACTGACAAATGCTAGTAATTGTGATATGGAGGATGGTCATACTGCTGGTGGATTCGGAACTCACGATCATATATTATGGGATTGGGAGAGTGTACTTATCCAAGCTGGGACTGATGAGCATGACTACTTATGGGATGGCCATGACAGACAAAACATGCTGTCTTGGTTGCGGGAAGGAGAATCTGCTACTGCTGCTGGTGATGATGATCACGCTGATGCCGTGGTTGCTTGGCTTCTATCTTGA

Protein Analysis

488

Amino Acids

53.34

Weight (kDa)

4.95

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.6e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 7.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
AbsI CCTCGAGG 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 489
AccII CGCG 1 cut(s) 989
AciI CCGC 8 cut(s) 56, 142, 378, 783, 989, 1134, 1206, 1390
AclWI GGATC 3 cut(s) 911, 924, 999
AcoI YGGCCR 1 cut(s) 1357
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 340
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 816, 1314
AfiI CCNNNNNNNGG 3 cut(s) 360, 489, 715
AhdI GACNNNNNGTC 1 cut(s) 1181
AjnI CCWGG 3 cut(s) 87, 107, 289
AluBI AGCT 5 cut(s) 188, 416, 437, 1131, 1325
AluI AGCT 5 cut(s) 188, 416, 437, 1131, 1325
Alw26I GTCTC 2 cut(s) 38, 1185
AlwI GGATC 3 cut(s) 911, 924, 999
AlwNI CAGNNNCTG 2 cut(s) 489, 1131
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 7 cut(s) 90, 448, 492, 535, 543, 699, 1357
ApeKI GCWGC 8 cut(s) 139, 434, 587, 590, 712, 1088, 1131, 1412
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
AsuC2I CCSGG 2 cut(s) 547, 704
AsuHPI GGTGA 2 cut(s) 839, 1430
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 2 cut(s) 706, 800
BalI TGGCCA 1 cut(s) 1359
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 10
BauI CACGAG 1 cut(s) 620
BbvI GCAGC 8 cut(s) 126, 446, 574, 577, 724, 1100, 1118, 1399
BccI CCATC 9 cut(s) 162, 739, 773, 818, 848, 880, 1024, 1247, 1349
BceAI ACGGC 2 cut(s) 1101, 1424
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 3 cut(s) 89, 109, 291
BclI TGATCA 4 cut(s) 760, 973, 1099, 1426
BcnI CCSGG 2 cut(s) 547, 704
BcoDI GTCTC 2 cut(s) 38, 1185
BfaI CTAG 1 cut(s) 1233
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 9 cut(s) 140, 435, 588, 591, 713, 1089, 1132, 1207, 1413
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 9 cut(s) 141, 436, 589, 592, 714, 1090, 1133, 1208, 1414
Bme1390I CCNGG 5 cut(s) 89, 109, 291, 547, 704
Bme18I GGWCC 2 cut(s) 706, 800
BmeRI GACNNNNNGTC 1 cut(s) 1181
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
BmiI GGNNCC 4 cut(s) 12, 106, 702, 918
BmrFI CCNGG 5 cut(s) 89, 109, 291, 547, 704
BmsI GCATC 2 cut(s) 958, 1426
BpmI CTGGAG 2 cut(s) 130, 744
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 3 cut(s) 20, 201, 355
BpuMI CCSGG 2 cut(s) 547, 704
BsaAI YACGTR 1 cut(s) 685
BsaBI GATNNNNATC 5 cut(s) 600, 972, 996, 1101, 1425
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 660, 702, 1440
Bsc4I CCNNNNNNNGG 3 cut(s) 360, 489, 715
Bse1I ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
Bse8I GATNNNNATC 5 cut(s) 600, 972, 996, 1101, 1425
BseBI CCWGG 3 cut(s) 89, 109, 291
BseDI CCNNGG 3 cut(s) 660, 702, 1440
BseGI GGATG 4 cut(s) 70, 805, 1258, 1360
BseJI GATNNNNATC 5 cut(s) 600, 972, 996, 1101, 1425
BseLI CCNNNNNNNGG 3 cut(s) 360, 489, 715
BseMII CTCAG 3 cut(s) 91, 173, 542
BseNI ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
BseXI GCAGC 8 cut(s) 126, 446, 574, 577, 724, 1100, 1118, 1399
BseYI CCCAGC 3 cut(s) 131, 489, 1325
Bsh1236I CGCG 1 cut(s) 989
BshFI GGCC 7 cut(s) 92, 450, 494, 537, 545, 701, 1359
BshNI GGYRCC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 2 cut(s) 547, 704
BslFI GGGAC 1 cut(s) 1342
BslI CCNNNNNNNGG 3 cut(s) 360, 489, 715
BsmAI GTCTC 2 cut(s) 38, 1185
BsmFI GGGAC 1 cut(s) 1342
BsmI GAATGC 2 cut(s) 133, 1198
BsnI GGCC 7 cut(s) 92, 450, 494, 537, 545, 701, 1359
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 814
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 8 cut(s) 56, 142, 378, 783, 989, 1134, 1206, 1390
BspANI GGCC 7 cut(s) 92, 450, 494, 537, 545, 701, 1359
BspCNI CTCAG 3 cut(s) 90, 174, 543
BspFNI CGCG 1 cut(s) 989
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 4 cut(s) 12, 106, 702, 918
BspPI GGATC 3 cut(s) 911, 924, 999
BspQI GCTCTTC 1 cut(s) 1216
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 814
BsrI ACTGG 6 cut(s) 326, 402, 483, 727, 918, 1092
BssECI CCNNGG 3 cut(s) 660, 702, 1440
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 620
Bst2UI CCWGG 3 cut(s) 89, 109, 291
Bst4CI ACNGT 2 cut(s) 661, 754
Bst6I CTCTTC 2 cut(s) 463, 1216
BstACI GRCGYC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 1131
BstAUI TGTACA 1 cut(s) 814
BstBAI YACGTR 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 77, 182, 551
BstDSI CCRYGG 2 cut(s) 660, 1440
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 4 cut(s) 70, 805, 1258, 1360
BstFNI CGCG 1 cut(s) 989
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 38, 1185
BstMWI GCNNNNNNNGC 4 cut(s) 941, 1131, 1412, 1445
BstNI CCWGG 3 cut(s) 89, 109, 291
BstNSI RCATGY 2 cut(s) 248, 1378
BstSCI CCNGG 5 cut(s) 87, 107, 289, 545, 702
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 8 cut(s) 126, 446, 574, 577, 724, 1100, 1118, 1399
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 916
BsuRI GGCC 7 cut(s) 92, 450, 494, 537, 545, 701, 1359
BtgI CCRYGG 2 cut(s) 660, 1440
BtsCI GGATG 4 cut(s) 70, 805, 1258, 1360
BtsIMutI CAGTG 2 cut(s) 1099, 1220
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 2 cut(s) 489, 1131
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
CseI GACGC 1 cut(s) 995
Csp6I GTAC 2 cut(s) 815, 1313
CviQI GTAC 2 cut(s) 815, 1313
DdeI CTNAG 3 cut(s) 77, 182, 551
DinI GGCGCC 1 cut(s) 12
DraI TTTAAA 1 cut(s) 609
DrdI GACNNNNNNGTC 1 cut(s) 1034
DriI GACNNNNNGTC 1 cut(s) 1181
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 1 cut(s) 1357
Eam1104I CTCTTC 2 cut(s) 463, 1216
Eam1105I GACNNNNNGTC 1 cut(s) 1181
EarI CTCTTC 2 cut(s) 463, 1216
EciI GGCGGA 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 706, 800
Eco57I CTGAAG 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 2 cut(s) 449, 700
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 87, 107, 289
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaqI GGGAC 1 cut(s) 1342
FauI CCCGC 1 cut(s) 1383
FbaI TGATCA 4 cut(s) 760, 973, 1099, 1426
Fnu4HI GCNGC 9 cut(s) 140, 435, 588, 591, 713, 1089, 1132, 1207, 1413
FokI GGATG 4 cut(s) 77, 792, 1265, 1367
Fsp4HI GCNGC 9 cut(s) 140, 435, 588, 591, 713, 1089, 1132, 1207, 1413
FspBI CTAG 1 cut(s) 1233
GlaI GCGC 1 cut(s) 12
GluI GCNGC 9 cut(s) 140, 435, 588, 591, 713, 1089, 1132, 1207, 1413
GsaI CCCAGC 3 cut(s) 135, 493, 1329
GsuI CTGGAG 2 cut(s) 130, 744
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 7 cut(s) 92, 450, 494, 537, 545, 701, 1359
HapII CCGG 2 cut(s) 547, 704
HgaI GACGC 1 cut(s) 995
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 4 cut(s) 280, 839, 1272, 1400
HpaII CCGG 2 cut(s) 547, 704
HphI GGTGA 2 cut(s) 839, 1430
Hpy166II GTNNAC 6 cut(s) 51, 619, 664, 817, 873, 1313
Hpy188I TCNGA 3 cut(s) 183, 768, 1277
Hpy8I GTNNAC 6 cut(s) 51, 619, 664, 817, 873, 1313
Hpy99I CGWCG 2 cut(s) 824, 1072
HpyAV CCTTC 5 cut(s) 34, 39, 95, 364, 1388
HpyCH4III ACNGT 2 cut(s) 661, 754
HpyCH4IV ACGT 2 cut(s) 573, 684
HpyCH4V TGCA 5 cut(s) 159, 244, 673, 944, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 941, 1131, 1412, 1445
HpyF3I CTNAG 3 cut(s) 77, 182, 551
HpySE526I ACGT 2 cut(s) 573, 684
Hsp92I GRCGYC 1 cut(s) 11
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
Ksp22I TGATCA 4 cut(s) 760, 973, 1099, 1426
LguI GCTCTTC 1 cut(s) 1216
LmnI GCTCC 2 cut(s) 110, 1114
Lsp1109I GCAGC 8 cut(s) 126, 446, 574, 577, 724, 1100, 1118, 1399
LweI GCATC 2 cut(s) 958, 1426
MaeI CTAG 1 cut(s) 1233
MaeII ACGT 2 cut(s) 573, 684
MaeIII GTNAC 3 cut(s) 1025, 1183, 1218
MboII GAAGA 7 cut(s) 204, 236, 306, 480, 511, 514, 1203
MflI RGATCY 1 cut(s) 916
MlsI TGGCCA 1 cut(s) 1359
MluNI TGGCCA 1 cut(s) 1359
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 289
Mox20I TGGCCA 1 cut(s) 1359
MroXI GAANNNNTTC 1 cut(s) 208
MscI TGGCCA 1 cut(s) 1359
MseI TTAA 5 cut(s) 194, 576, 608, 897, 938
MslI CAYNNNNRTG 4 cut(s) 822, 966, 1021, 1434
Msp20I TGGCCA 1 cut(s) 1359
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 2 cut(s) 547, 704
MspR9I CCNGG 5 cut(s) 89, 109, 291, 547, 704
Mva1269I GAATGC 2 cut(s) 133, 1198
MvaI CCWGG 3 cut(s) 89, 109, 291
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 4 cut(s) 941, 1131, 1412, 1445
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 2 cut(s) 547, 704
NlaIV GGNNCC 4 cut(s) 12, 106, 702, 918
NmuCI GTSAC 3 cut(s) 1025, 1183, 1218
NspI RCATGY 2 cut(s) 248, 1378
PaeI GCATGC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 539
PagI TCATGA 1 cut(s) 421
PceI AGGCCT 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 1216
PcsI WCGNNNNNNNCGW 2 cut(s) 1281, 1437
PctI GAATGC 2 cut(s) 133, 1198
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 839, 1272, 1400
PflMI CCANNNNNTGG 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 9 cut(s) 141, 436, 589, 592, 714, 1090, 1133, 1208, 1414
PleI GAGTC 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 685
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 3 cut(s) 87, 107, 289
PspFI CCCAGC 3 cut(s) 131, 489, 1325
PspGI CCWGG 3 cut(s) 87, 107, 289
PspN4I GGNNCC 4 cut(s) 12, 106, 702, 918
PspPI GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
PspXI VCTCGAGB 1 cut(s) 539
PsrI GAACNNNNNNTAC 2 cut(s) 497, 529
PstNI CAGNNNCTG 2 cut(s) 489, 1131
PsuI RGATCY 1 cut(s) 916
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 816, 1314
RsaNI GTAC 2 cut(s) 815, 1313
RseI CAYNNNNRTG 4 cut(s) 822, 966, 1021, 1434
SapI GCTCTTC 1 cut(s) 1216
SaqAI TTAA 5 cut(s) 194, 576, 608, 897, 938
SatI GCNGC 9 cut(s) 140, 435, 588, 591, 713, 1089, 1132, 1207, 1413
Sau96I GGNCC 6 cut(s) 449, 492, 544, 700, 706, 800
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 5 cut(s) 89, 109, 291, 547, 704
SfaNI GCATC 2 cut(s) 958, 1426
SfoI GGCGCC 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 539
SinI GGWCC 2 cut(s) 706, 800
SlaI CTCGAG 1 cut(s) 539
SmiMI CAYNNNNRTG 4 cut(s) 822, 966, 1021, 1434
SmlI CTYRAG 4 cut(s) 35, 216, 334, 539
SmoI CTYRAG 4 cut(s) 35, 216, 334, 539
SphI GCATGC 1 cut(s) 248
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 8 cut(s) 56, 142, 378, 783, 989, 1134, 1206, 1390
SspDI GGCGCC 1 cut(s) 10
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 1233
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 5 cut(s) 87, 107, 289, 545, 702
TaaI ACNGT 2 cut(s) 661, 754
TaiI ACGT 2 cut(s) 576, 687
TaqI TCGA 4 cut(s) 518, 540, 1157, 1214
TatI WGTACW 2 cut(s) 814, 1312
TauI GCSGC 1 cut(s) 1209
TfiI GAWTC 3 cut(s) 839, 1272, 1400
Tru1I TTAA 5 cut(s) 194, 576, 608, 897, 938
Tru9I TTAA 5 cut(s) 194, 576, 608, 897, 938
TscAI CASTG 2 cut(s) 1099, 1227
TseFI GTSAC 3 cut(s) 1025, 1183, 1218
TseI GCWGC 8 cut(s) 139, 434, 587, 590, 712, 1088, 1131, 1412
Tsp45I GTSAC 3 cut(s) 1025, 1183, 1218
TspDTI ATGAA 7 cut(s) 81, 438, 512, 848, 852, 950, 1191
TspGWI ACGGA 2 cut(s) 998, 1188
TspRI CASTG 2 cut(s) 1099, 1227
Van91I CCANNNNNTGG 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 706, 800
VspI ATTAAT 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 248, 1378
XhoI CTCGAG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.