RH7CG518700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG518700.1

Sequence Viewer

Length: 1380 bp
ATGGGGAGGGCTCCGTGCTGCGAGAAAGTTGGGCTGAAGAAGGGGAGATGGACAGCAGAGGAGGATCAAACCTTAATCAACTACATCCATGCTAATGGGGAAGGCTCCTGGAGATCATTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATGTCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATCGACACTTTCAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCAGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCTGATGTTCAAATGAATATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGAAGAGGCGGTAGAACCAGTCGTTGGGCCATGAAGAAGAACAAAATTTCGTACGCTTCTACTGCCATTAACCACCAGTTAGATTGTTCTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCATCAATTAATATGTGTCCCCCTCCACCTCCTTCAGCAGCAGCAGTTGCAGCTTGCATTGGACAAAAAGAAACACAAAATTTAGGCGGAGGAGGACCATCTGATTGCTCAGAAGGCAAAATTGATGGCGGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAGCGAAACAATATTGGATCCAGCTGGAGCTCTGACTTTAAGTGGTGAAAGACAAAGCGATGATGATGATGTCATGGGCGTTATTGGGGATGAGGATACCGGCAAACTTTTATGTGGTCCAAATAAAGTGATGACTACCTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCAAACTCAAATTCAAAATCAAGTTATGGAGAAGCAGAAGCAGCTGCGTTTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGTTCAGCAGCTGCTACTTGTAATTTTGATCAGCAGAAGCAGCAGCTTGATGGAATGAATGGAACATTGGATGATGAAATGAGATGGGATTGGGAGAGTGATACCCATATGCACGACTACTTATGGAATTTTGATCAGAAAGACGATGAGAATATACTCTCTTGGTTATGGGAGCATCAGGCTGCAGAGGATCGTCATGACCATAACAATAAATCGAGATCAGAGGCCACGGTCGACGATGAACATGTCCCAGCTGACAAGCATAATGCTATTCTTGCTTGGCTTCTATCATGA

Protein Analysis

459

Amino Acids

50.15

Weight (kDa)

5.28

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.2e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 4.2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 1076
AccB7I CCANNNNNTGG 1 cut(s) 510
AccI GTMKAC 1 cut(s) 1320
AciI CCGC 6 cut(s) 142, 426, 495, 699, 741, 932
AclWI GGATC 5 cut(s) 72, 598, 794, 807, 1284
AcsI RAATTY 4 cut(s) 531, 691, 1003, 1213
AcuI CTGAAG 2 cut(s) 56, 630
AcyI GRCGYC 1 cut(s) 777
AfaI GTAC 2 cut(s) 539, 925
AfiI CCNNNNNNNGG 1 cut(s) 510
AflIII ACRYGT 1 cut(s) 1330
AgsI TTSAA 3 cut(s) 440, 760, 1008
AjnI CCWGG 2 cut(s) 107, 289
AjuI GAANNNNNNNTTGG 4 cut(s) 493, 525, 1136, 1168
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 5 cut(s) 72, 598, 794, 807, 1284
AlwNI CAGNNNCTG 1 cut(s) 1097
AoxI GGCC 3 cut(s) 464, 513, 1311
ApoI RAATTY 4 cut(s) 531, 691, 1003, 1213
AseI ATTAAT 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 464, 513, 707, 899
AsuHPI GGTGA 2 cut(s) 613, 839
AvaII GGWCC 2 cut(s) 707, 899
BamHI GGATCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 13, 814
Bbv12I GWGCWC 1 cut(s) 814
BccI CCATC 9 cut(s) 42, 162, 581, 718, 731, 766, 1040, 1130, 1164
BceAI ACGGC 1 cut(s) 764
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 109, 291
BciVI GTATCC 1 cut(s) 871
BclI TGATCA 2 cut(s) 1114, 1219
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 279, 402
BfmI CTRYAG 3 cut(s) 387, 927, 1269
BfuAI ACCTGC 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 871
Bme1390I CCNGG 2 cut(s) 109, 291
Bme18I GGWCC 2 cut(s) 707, 899
BmgT120I GGNCC 4 cut(s) 464, 513, 707, 899
BmiI GGNNCC 3 cut(s) 12, 106, 801
BmrFI CCNGG 2 cut(s) 109, 291
BmsI GCATC 3 cut(s) 366, 961, 1270
BpmI CTGGAG 2 cut(s) 130, 828
BpuEI CTTGAG 2 cut(s) 201, 355
BsaHI GRCGYC 1 cut(s) 777
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 1314
BsaXI ACNNNNNCTCC 2 cut(s) 1043, 1073
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 4 cut(s) 326, 504, 562, 1061
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 109, 291
BseDI CCNNGG 1 cut(s) 1314
BseGI GGATG 4 cut(s) 84, 473, 877, 1162
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 4 cut(s) 155, 173, 735, 1095
BseNI ACTGG 4 cut(s) 326, 504, 562, 1061
BseRI GAGGAG 5 cut(s) 74, 204, 717, 959, 962
BseYI CCCAGC 1 cut(s) 1336
Bsh1285I CGRYCG 1 cut(s) 1320
BshFI GGCC 3 cut(s) 466, 515, 1313
BsiEI CGRYCG 1 cut(s) 1320
BsiHKAI GWGCWC 1 cut(s) 814
BsiSI CCGG 1 cut(s) 882
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 615, 1319
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 615, 1319
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 466, 515, 1313
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 13, 814
Bsp143I GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
BspACI CCGC 6 cut(s) 142, 426, 495, 699, 741, 932
BspANI GGCC 3 cut(s) 466, 515, 1313
BspCNI CTCAG 4 cut(s) 156, 174, 734, 1094
BspHI TCATGA 3 cut(s) 940, 1282, 1376
BspLI GGNNCC 3 cut(s) 12, 106, 801
BspMAI CTGCAG 2 cut(s) 931, 1273
BspMI ACCTGC 1 cut(s) 1076
BspPI GGATC 5 cut(s) 72, 598, 794, 807, 1284
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 4 cut(s) 326, 504, 562, 1061
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 1 cut(s) 1314
BssMI GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
BssNI GRCGYC 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 109, 291
Bst4CI ACNGT 2 cut(s) 601, 1318
Bst6I CTCTTC 3 cut(s) 146, 478, 484
BstACI GRCGYC 1 cut(s) 777
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 246, 667
BstDEI CTNAG 4 cut(s) 164, 182, 721, 1081
BstDSI CCRYGG 1 cut(s) 1314
BstF5I GGATG 4 cut(s) 84, 473, 877, 1162
BstKTI GATC 9 cut(s) 67, 116, 593, 802, 964, 1117, 1222, 1279, 1307
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
BstMCI CGRYCG 1 cut(s) 1320
BstNI CCWGG 2 cut(s) 109, 291
BstNSI RCATGY 2 cut(s) 248, 1334
BstSCI CCNGG 2 cut(s) 107, 289
BstSFI CTRYAG 3 cut(s) 387, 927, 1269
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 799
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 3 cut(s) 466, 515, 1313
BtgI CCRYGG 1 cut(s) 1314
BtgZI GCGATG 2 cut(s) 467, 855
BtsCI GGATG 4 cut(s) 84, 473, 877, 1162
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 2 cut(s) 246, 667
CaiI CAGNNNCTG 1 cut(s) 1097
CciI TCATGA 3 cut(s) 940, 1282, 1376
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 4 cut(s) 464, 513, 707, 899
CseI GACGC 1 cut(s) 785
Csp6I GTAC 2 cut(s) 538, 924
CviAII CATG 9 cut(s) 89, 245, 517, 856, 941, 1068, 1283, 1331, 1377
CviQI GTAC 2 cut(s) 538, 924
DdeI CTNAG 4 cut(s) 164, 182, 721, 1081
DpnI GATC 9 cut(s) 66, 115, 592, 801, 963, 1116, 1221, 1278, 1306
DpnII GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 146, 478, 484
EarI CTCTTC 3 cut(s) 146, 478, 484
EciI GGCGGA 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 812
Eco24I GRGCYC 2 cut(s) 13, 814
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 707, 899
Eco53kI GAGCTC 1 cut(s) 812
Eco57I CTGAAG 2 cut(s) 56, 630
EcoICRI GAGCTC 1 cut(s) 812
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 107, 289
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 13, 814
FaeI CATG 9 cut(s) 92, 248, 520, 859, 944, 1071, 1286, 1334, 1380
FaqI GGGAC 2 cut(s) 615, 1319
FatI CATG 9 cut(s) 88, 244, 516, 855, 940, 1067, 1282, 1330, 1376
FauNDI CATATG 2 cut(s) 381, 1194
FbaI TGATCA 2 cut(s) 1114, 1219
FblI GTMKAC 1 cut(s) 1320
FokI GGATG 4 cut(s) 71, 460, 884, 1169
FriOI GRGCYC 2 cut(s) 13, 814
FspBI CTAG 2 cut(s) 279, 402
GsaI CCCAGC 1 cut(s) 1340
GsuI CTGGAG 2 cut(s) 130, 828
HaeIII GGCC 3 cut(s) 466, 515, 1313
HapII CCGG 1 cut(s) 882
HgaI GACGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 777
Hin1II CATG 9 cut(s) 92, 248, 520, 859, 944, 1071, 1286, 1334, 1380
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 882
HphI GGTGA 2 cut(s) 613, 839
Hpy166II GTNNAC 1 cut(s) 1321
Hpy188I TCNGA 7 cut(s) 183, 715, 724, 816, 966, 1224, 1309
Hpy188III TCNNGA 6 cut(s) 218, 358, 941, 1283, 1302, 1377
Hpy8I GTNNAC 1 cut(s) 1321
Hpy99I CGWCG 1 cut(s) 1325
HpyAV CCTTC 4 cut(s) 34, 95, 654, 719
HpyCH4III ACNGT 2 cut(s) 601, 1318
HpyCH4V TGCA 9 cut(s) 131, 159, 244, 379, 662, 669, 929, 1198, 1271
HpyF3I CTNAG 4 cut(s) 164, 182, 721, 1081
Hsp92I GRCGYC 1 cut(s) 777
Hsp92II CATG 9 cut(s) 92, 248, 520, 859, 944, 1071, 1286, 1334, 1380
Ksp22I TGATCA 2 cut(s) 1114, 1219
Kzo9I GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
LmnI GCTCC 5 cut(s) 16, 110, 809, 949, 1258
LweI GCATC 3 cut(s) 366, 961, 1270
MaeI CTAG 2 cut(s) 279, 402
MaeIII GTNAC 2 cut(s) 135, 601
MalI GATC 9 cut(s) 66, 115, 592, 801, 963, 1116, 1221, 1278, 1306
MboI GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
MboII GAAGA 8 cut(s) 49, 163, 236, 306, 495, 501, 532, 535
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 13, 814
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 494
Mph1103I ATGCAT 1 cut(s) 381
MseI TTAA 6 cut(s) 74, 194, 369, 555, 621, 821
MslI CAYNNNNRTG 2 cut(s) 93, 582
MspA1I CMGCKG 6 cut(s) 431, 806, 932, 1037, 1097, 1340
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 2 cut(s) 109, 291
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 2 cut(s) 109, 291
NdeI CATATG 2 cut(s) 381, 1194
NdeII GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
NlaIII CATG 9 cut(s) 92, 248, 520, 859, 944, 1071, 1286, 1334, 1380
NlaIV GGNNCC 3 cut(s) 12, 106, 801
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 248, 1334
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 3 cut(s) 940, 1282, 1376
PciI ACATGT 1 cut(s) 1330
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PctI GAATGC 1 cut(s) 133
Pfl23II CGTACG 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 510
PfoI TCCNGGA 1 cut(s) 107
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 1330
PshBI ATTAAT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 814
Psp6I CCWGG 2 cut(s) 107, 289
PspFI CCCAGC 1 cut(s) 1336
PspGI CCWGG 2 cut(s) 107, 289
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 12, 106, 801
PspPI GGNCC 4 cut(s) 464, 513, 707, 899
PstI CTGCAG 2 cut(s) 931, 1273
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 5 cut(s) 431, 806, 1037, 1097, 1340
RsaI GTAC 2 cut(s) 539, 925
RsaNI GTAC 2 cut(s) 538, 924
RseI CAYNNNNRTG 2 cut(s) 93, 582
SacI GAGCTC 1 cut(s) 814
SalI GTCGAC 1 cut(s) 1319
SaqAI TTAA 6 cut(s) 74, 194, 369, 555, 621, 821
Sau3AI GATC 9 cut(s) 64, 113, 590, 799, 961, 1114, 1219, 1276, 1304
Sau96I GGNCC 4 cut(s) 464, 513, 707, 899
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 109, 291
SduI GDGCHC 2 cut(s) 13, 814
SfaNI GCATC 3 cut(s) 366, 961, 1270
SfcI CTRYAG 3 cut(s) 387, 927, 1269
SinI GGWCC 2 cut(s) 707, 899
SmiMI CAYNNNNRTG 2 cut(s) 93, 582
SmlI CTYRAG 2 cut(s) 216, 334
SmoI CTYRAG 2 cut(s) 216, 334
SphI GCATGC 1 cut(s) 248
SsiI CCGC 6 cut(s) 142, 426, 495, 699, 741, 932
SspI AATATT 2 cut(s) 208, 795
SspMI CTAG 2 cut(s) 279, 402
SstI GAGCTC 1 cut(s) 814
StyD4I CCNGG 2 cut(s) 107, 289
TaaI ACNGT 2 cut(s) 601, 1318
TaqI TCGA 5 cut(s) 340, 348, 960, 1301, 1320
TatI WGTACW 1 cut(s) 923
TauI GCSGC 1 cut(s) 935
Tru1I TTAA 6 cut(s) 74, 194, 369, 555, 621, 821
Tru9I TTAA 6 cut(s) 74, 194, 369, 555, 621, 821
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 8 cut(s) 458, 470, 533, 978, 1056, 1157, 1176, 1341
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 510
VpaK11BI GGWCC 2 cut(s) 707, 899
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 4 cut(s) 531, 691, 1003, 1213
XceI RCATGY 2 cut(s) 248, 1334
XmiI GTMKAC 1 cut(s) 1320
XspI CTAG 2 cut(s) 279, 402
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.