Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Reverse (-)

38512645 .. 38514535

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0348100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGGTAAATTCAATAATAGTAGCCATTGTGGTGAATGCAAATAAGTCATCTGGCATCATTTACCATGTGGGAAGCTCACTAAGAAATCCTATAAAACTCTACGATATATGTGGTTTTATGTTCAAATACTTCACCAAATATCCATGGGTTAATAAGGATGAAAAGTCTATCGTAGTGAAGAAGATTTCAATATTCAAGACTAGGTCTACTTTTCATATGTACATGAAAATTCGCTACTCACTTCCTTTGAAGGGATTAAAGTTGGTGAACAAAGCATCTTGCCAATATTTTCAAGATGTATATGTCAAGTATAACCAGAAATTCAAATTGGCGATGCGCATGGTGGAGCTATACCGTCCCTATATGTTATTCAAGGGCATTTTTGACGACTCCAACACAGAGGACTTGCGAAAGATAACGAAAGAAGGTTATATAGAAGCAGAGAACTTTAATTTTGATCCGACATGCATTGATTGGGAAGACTATATTATGAACCGTCACATTCCAGGATTCCTGAAACATGTTCTAATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

179

Amino Acids

21.23

Weight (kDa)

9.53

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	80 - 177	1.9e-15	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	3 cut(s)	10, 231, 323
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	15, 127, 192, 199, 253, 296, 328, 376
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	2 cut(s)	78, 352
AluI	AGCT	2 cut(s)	78, 352
AlwI	GGATC	1 cut(s)	455
ApoI	RAATTY	3 cut(s)	10, 231, 323
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	46, 127, 280
BbsI	GAAGAC	1 cut(s)	489
BciT130I	CCWGG	1 cut(s)	510
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	3 cut(s)	66, 287, 327
BpiI	GAAGAC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	460
Bsp19I	CCATGG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	359, 500
BstAUI	TGTACA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	471, 527
BstSCI	CCNGG	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	6 cut(s)	68, 147, 226, 343, 468, 524
CviJI	RGCY	3 cut(s)	26, 78, 352
CviKI_1	RGCY	3 cut(s)	26, 78, 352
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	6 cut(s)	71, 150, 229, 346, 471, 527
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	6 cut(s)	67, 146, 225, 342, 467, 523
FauNDI	CATATG	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	209
FokI	GGATG	1 cut(s)	173
FspAI	RTGCGCAY	1 cut(s)	341
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	341
GlaI	GCGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	71, 150, 229, 346, 471, 527
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	392, 513
HphI	GGTGA	3 cut(s)	46, 127, 280
Hpy166II	GTNNAC	2 cut(s)	210, 271
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	3 cut(s)	199, 296, 517
Hpy8I	GTNNAC	2 cut(s)	210, 271
HpyAV	CCTTC	2 cut(s)	247, 422
HpyCH4III	ACNGT	2 cut(s)	359, 500
HpyCH4V	TGCA	2 cut(s)	41, 471
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	71, 150, 229, 346, 471, 527
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	5 cut(s)	39, 332, 495, 522, 530
LweI	GCATC	3 cut(s)	66, 287, 327
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	3 cut(s)	193, 196, 494
MluCI	AATT	5 cut(s)	10, 231, 323, 329, 454
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	420, 488
MnlI	CCTC	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	473
MseI	TTAA	3 cut(s)	153, 260, 453
MslI	CAYNNNNRTG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	6 cut(s)	71, 150, 229, 346, 471, 527
NmuCI	GTSAC	1 cut(s)	500
NsbI	TGCGCA	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	473
NspI	RCATGY	2 cut(s)	471, 527
PciI	ACATGT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	513
PflFI	GACNNNGTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	508
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PscI	ACATGT	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	153, 260, 453
Sau3AI	GATC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	510
SetI	ASST	4 cut(s)	80, 209, 354, 433
SfaNI	GCATC	3 cut(s)	66, 287, 327
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	10, 231, 323, 329, 454
SspI	AATATT	2 cut(s)	195, 290
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	359, 500
TasI	AATT	5 cut(s)	10, 231, 323, 329, 454
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	3 cut(s)	153, 260, 453
Tru9I	TTAA	3 cut(s)	153, 260, 453
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	177, 206, 242, 509
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	3 cut(s)	10, 231, 323
XceI	RCATGY	2 cut(s)	471, 527
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.