Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001865.1

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Reverse (-)

32737 .. 35334

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001865.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggggagggctccgtgctgcgagaaagttgggctgaagaaggggagatggacggcagaggaggatcaaaccttaatcaactacatccatgctaatggggaaggctcctggagatcattgcccaagaatgcagggttactgcggtgtgggaagagttgcagactgagatggataaactatctgagaactgacttaaagaggggaaatattactcctcaagaggaagatatcatcatcaaattgcatgcttctctgggaaataggtggtctttgatagctagtcaattaccaggaagaacagacaatgagataaagaactactggaactcgcacttgagtcgaaaaatcgacactttcaggagacctcttaatatgatgcatatggctacagcagcggcagctagtagcagtagtggcagcagcaccgcagcagcaggtgttcaaatgaatatggcgatgaaattagggcctccaacatccaagcgaagaggaagaggcggtagaaccagtcgctgggccatgaagaagaacaaaatttcgtacgcttctactggcatcaaccaccatttagattgtactcataaagatgatggatcggcaacggtgacaagctcgtcgtcaattaatatgtgtccccctccacctccttcagcagcagcagtcgcagctggcattggacaaaaagaaacacaaaatttaggaggaggaggaccatctgattgctcagaaggcaaaattgatggcggtggggaggtcgctttcaatgacttgatgatggacgccgtcaacgaaacaatattggatccagctggggctctgactttaagtggtgaaagacaaagcgatgatggcgatatcatgggcgtcattagggatgaggataccggcaaacttttatgtggtccaaataaagtgatgactacttgtactgcagcggcaagtcatgaggaggagcatcagctcgatcagattagtgctactaatttgagttcatcatcacactcaaattcaaaatcaagttattatggagaagcagaagcagctgcatttgatggggaggactggtataattcatgttctaattactcagcaggctcagcagctgctacttgtaattttgatcagcagaagcagcagtatgatggaatgaatggaacattggatgatgaaatgagatggaattgggagagtgatatccatatgcacgactacttatggaatattgatcagaaagacgatgagaatatactctcctggttatgggagcatcaggctgcagaggatcatcatgatgaccaccataacaataaatcgagatcagaggccacggtcgacgatgaacatgtcccagctgacaagcataatgctattcttgcttggcttctatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

463

Amino Acids

50.67

Weight (kDa)

5.61

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
AasI	GACNNNNNNGTC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	1332
AciI	CCGC	6 cut(s)	142, 395, 426, 498, 744, 935
AclWI	GGATC	5 cut(s)	72, 601, 797, 810, 1290
AcsI	RAATTY	3 cut(s)	534, 694, 1006
AcuI	CTGAAG	2 cut(s)	56, 633
AcyI	GRCGYC	2 cut(s)	780, 864
AfaI	GTAC	3 cut(s)	542, 577, 928
AfiI	CCNNNNNNNGG	2 cut(s)	513, 1260
AflIII	ACRYGT	1 cut(s)	1342
AgsI	TTSAA	3 cut(s)	443, 763, 1011
AjnI	CCWGG	3 cut(s)	107, 289, 1253
AjuI	GAANNNNNNNTTGG	2 cut(s)	1142, 1174
AluBI	AGCT	9 cut(s)	278, 401, 612, 668, 809, 961, 1043, 1103, 1352
AluI	AGCT	9 cut(s)	278, 401, 612, 668, 809, 961, 1043, 1103, 1352
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	5 cut(s)	72, 601, 797, 810, 1290
AlwNI	CAGNNNCTG	2 cut(s)	513, 1103
AoxI	GGCC	3 cut(s)	467, 516, 1323
ApoI	RAATTY	3 cut(s)	534, 694, 1006
AseI	ATTAAT	1 cut(s)	624
AspS9I	GGNCC	4 cut(s)	467, 516, 710, 902
AsuHPI	GGTGA	2 cut(s)	616, 842
AvaII	GGWCC	2 cut(s)	710, 902
BamHI	GGATCC	1 cut(s)	802
BanII	GRGCYC	2 cut(s)	13, 817
BceAI	ACGGC	2 cut(s)	69, 767
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	3 cut(s)	109, 291, 1255
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	2 cut(s)	1120, 1225
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	279, 402
BfmI	CTRYAG	3 cut(s)	387, 930, 1275
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	874
BlpI	GCTNAGC	1 cut(s)	1096
Bme1390I	CCNGG	3 cut(s)	109, 291, 1255
Bme18I	GGWCC	2 cut(s)	710, 902
BmgT120I	GGNCC	4 cut(s)	467, 516, 710, 902
BmiI	GGNNCC	3 cut(s)	12, 106, 804
BmrFI	CCNGG	3 cut(s)	109, 291, 1255
BmsI	GCATC	4 cut(s)	366, 564, 964, 1276
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	1096
BpuEI	CTTGAG	2 cut(s)	201, 355
BsaHI	GRCGYC	2 cut(s)	780, 864
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	1326
BsaXI	ACNNNNNCTCC	2 cut(s)	1049, 1079
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 1260
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	4 cut(s)	326, 507, 556, 1067
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	109, 291, 1255
BseDI	CCNNGG	1 cut(s)	1326
BseGI	GGATG	4 cut(s)	84, 476, 880, 1168
BseLI	CCNNNNNNNGG	2 cut(s)	513, 1260
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	5 cut(s)	155, 173, 738, 1101, 1110
BseNI	ACTGG	4 cut(s)	326, 507, 556, 1067
BseRI	GAGGAG	6 cut(s)	74, 204, 717, 720, 962, 965
BseYI	CCCAGC	3 cut(s)	513, 809, 1348
Bsh1285I	CGRYCG	1 cut(s)	1332
BshFI	GGCC	3 cut(s)	469, 518, 1325
BsiEI	CGRYCG	1 cut(s)	1332
BsiSI	CCGG	1 cut(s)	885
BsiWI	CGTACG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	618, 1331
BslI	CCNNNNNNNGG	2 cut(s)	513, 1260
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	618, 1331
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	469, 518, 1325
Bso31I	GGTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	13, 817
Bsp143I	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
Bsp1720I	GCTNAGC	1 cut(s)	1096
BspACI	CCGC	6 cut(s)	142, 395, 426, 498, 744, 935
BspANI	GGCC	3 cut(s)	469, 518, 1325
BspCNI	CTCAG	5 cut(s)	156, 174, 737, 1100, 1109
BspHI	TCATGA	3 cut(s)	943, 1288, 1388
BspLI	GGNNCC	3 cut(s)	12, 106, 804
BspMAI	CTGCAG	2 cut(s)	934, 1279
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	5 cut(s)	72, 601, 797, 810, 1290
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	4 cut(s)	326, 507, 556, 1067
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	1 cut(s)	1326
BssMI	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
BssNI	GRCGYC	2 cut(s)	780, 864
Bst2UI	CCWGG	3 cut(s)	109, 291, 1255
Bst4CI	ACNGT	2 cut(s)	604, 1330
Bst6I	CTCTTC	3 cut(s)	146, 481, 487
BstACI	GRCGYC	2 cut(s)	780, 864
BstC8I	GCNNGC	3 cut(s)	246, 670, 1093
BstDEI	CTNAG	5 cut(s)	164, 182, 724, 1087, 1096
BstDSI	CCRYGG	1 cut(s)	1326
BstF5I	GGATG	4 cut(s)	84, 476, 880, 1168
BstKTI	GATC	9 cut(s)	67, 116, 596, 805, 967, 1123, 1228, 1285, 1319
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
BstMCI	CGRYCG	1 cut(s)	1332
BstNI	CCWGG	3 cut(s)	109, 291, 1255
BstNSI	RCATGY	2 cut(s)	248, 1346
BstSCI	CCNGG	3 cut(s)	107, 289, 1253
BstSFI	CTRYAG	3 cut(s)	387, 930, 1275
BstX2I	RGATCY	1 cut(s)	802
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	3 cut(s)	469, 518, 1325
BtgI	CCRYGG	1 cut(s)	1326
BtgZI	GCGATG	2 cut(s)	470, 858
BtsCI	GGATG	4 cut(s)	84, 476, 880, 1168
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	246, 670, 1093
CaiI	CAGNNNCTG	2 cut(s)	513, 1103
CciI	TCATGA	3 cut(s)	943, 1288, 1388
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	4 cut(s)	467, 516, 710, 902
CseI	GACGC	2 cut(s)	788, 853
Csp6I	GTAC	3 cut(s)	541, 576, 927
CviAII	CATG	9 cut(s)	89, 245, 520, 859, 944, 1074, 1289, 1343, 1389
CviQI	GTAC	3 cut(s)	541, 576, 927
DdeI	CTNAG	5 cut(s)	164, 182, 724, 1087, 1096
DpnI	GATC	9 cut(s)	66, 115, 595, 804, 966, 1122, 1227, 1284, 1318
DpnII	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
DrdI	GACNNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	146, 481, 487
EarI	CTCTTC	3 cut(s)	146, 481, 487
Eco24I	GRGCYC	2 cut(s)	13, 817
Eco31I	GGTCTC	1 cut(s)	355
Eco32I	GATATC	3 cut(s)	229, 856, 1195
Eco47I	GGWCC	2 cut(s)	710, 902
Eco57I	CTGAAG	2 cut(s)	56, 633
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	107, 289, 1253
EcoRV	GATATC	3 cut(s)	229, 856, 1195
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	13, 817
FaeI	CATG	9 cut(s)	92, 248, 523, 862, 947, 1077, 1292, 1346, 1392
FaqI	GGGAC	2 cut(s)	618, 1331
FatI	CATG	9 cut(s)	88, 244, 519, 858, 943, 1073, 1288, 1342, 1388
FauNDI	CATATG	2 cut(s)	381, 1200
FbaI	TGATCA	2 cut(s)	1120, 1225
FblI	GTMKAC	1 cut(s)	1332
FokI	GGATG	4 cut(s)	71, 463, 887, 1175
FriOI	GRGCYC	2 cut(s)	13, 817
FspBI	CTAG	2 cut(s)	279, 402
GsaI	CCCAGC	3 cut(s)	517, 813, 1352
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	469, 518, 1325
HapII	CCGG	1 cut(s)	885
HgaI	GACGC	2 cut(s)	788, 853
Hin1I	GRCGYC	2 cut(s)	780, 864
Hin1II	CATG	9 cut(s)	92, 248, 523, 862, 947, 1077, 1292, 1346, 1392
HincII	GTYRAC	2 cut(s)	787, 1333
HindII	GTYRAC	2 cut(s)	787, 1333
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	885
HphI	GGTGA	2 cut(s)	616, 842
Hpy166II	GTNNAC	2 cut(s)	787, 1333
Hpy188I	TCNGA	7 cut(s)	183, 718, 727, 819, 969, 1230, 1321
Hpy188III	TCNNGA	6 cut(s)	218, 358, 944, 1289, 1314, 1389
Hpy8I	GTNNAC	2 cut(s)	787, 1333
Hpy99I	CGWCG	2 cut(s)	619, 1337
HpyAV	CCTTC	4 cut(s)	34, 95, 657, 722
HpyCH4III	ACNGT	2 cut(s)	604, 1330
HpyCH4V	TGCA	8 cut(s)	131, 159, 244, 379, 932, 1046, 1204, 1277
HpyF3I	CTNAG	5 cut(s)	164, 182, 724, 1087, 1096
Hsp92I	GRCGYC	2 cut(s)	780, 864
Hsp92II	CATG	9 cut(s)	92, 248, 523, 862, 947, 1077, 1292, 1346, 1392
Ksp22I	TGATCA	2 cut(s)	1120, 1225
Kzo9I	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
LmnI	GCTCC	4 cut(s)	16, 110, 952, 1264
LweI	GCATC	4 cut(s)	366, 564, 964, 1276
MaeI	CTAG	2 cut(s)	279, 402
MaeIII	GTNAC	2 cut(s)	135, 604
MalI	GATC	9 cut(s)	66, 115, 595, 804, 966, 1122, 1227, 1284, 1318
MboI	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
MboII	GAAGA	8 cut(s)	49, 163, 236, 306, 498, 504, 535, 538
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	13, 817
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	5 cut(s)	74, 194, 369, 624, 824
MslI	CAYNNNNRTG	3 cut(s)	93, 585, 1290
MspA1I	CMGCKG	7 cut(s)	395, 668, 809, 935, 1043, 1103, 1352
MspI	CCGG	1 cut(s)	885
MspR9I	CCNGG	3 cut(s)	109, 291, 1255
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	109, 291, 1255
NdeI	CATATG	2 cut(s)	381, 1200
NdeII	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
NlaIII	CATG	9 cut(s)	92, 248, 523, 862, 947, 1077, 1292, 1346, 1392
NlaIV	GGNNCC	3 cut(s)	12, 106, 804
NmuCI	GTSAC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	2 cut(s)	248, 1346
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	3 cut(s)	943, 1288, 1388
PaqCI	CACCTGC	1 cut(s)	425
PciI	ACATGT	1 cut(s)	1342
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PctI	GAATGC	1 cut(s)	133
Pfl23II	CGTACG	1 cut(s)	540
PflFI	GACNNNGTC	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	513
PfoI	TCCNGGA	1 cut(s)	107
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PscI	ACATGT	1 cut(s)	1342
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	3 cut(s)	107, 289, 1253
PspFI	CCCAGC	3 cut(s)	513, 809, 1348
PspGI	CCWGG	3 cut(s)	107, 289, 1253
PspLI	CGTACG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	12, 106, 804
PspPI	GGNCC	4 cut(s)	467, 516, 710, 902
PstI	CTGCAG	2 cut(s)	934, 1279
PstNI	CAGNNNCTG	2 cut(s)	513, 1103
PsuI	RGATCY	1 cut(s)	802
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	5 cut(s)	668, 809, 1043, 1103, 1352
RsaI	GTAC	3 cut(s)	542, 577, 928
RsaNI	GTAC	3 cut(s)	541, 576, 927
RseI	CAYNNNNRTG	3 cut(s)	93, 585, 1290
SalI	GTCGAC	1 cut(s)	1331
SaqAI	TTAA	5 cut(s)	74, 194, 369, 624, 824
Sau3AI	GATC	9 cut(s)	64, 113, 593, 802, 964, 1120, 1225, 1282, 1316
Sau96I	GGNCC	4 cut(s)	467, 516, 710, 902
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	3 cut(s)	109, 291, 1255
SduI	GDGCHC	2 cut(s)	13, 817
SfaNI	GCATC	4 cut(s)	366, 564, 964, 1276
SfcI	CTRYAG	3 cut(s)	387, 930, 1275
SinI	GGWCC	2 cut(s)	710, 902
SmiMI	CAYNNNNRTG	3 cut(s)	93, 585, 1290
SmlI	CTYRAG	2 cut(s)	216, 334
SmoI	CTYRAG	2 cut(s)	216, 334
SphI	GCATGC	1 cut(s)	248
SsiI	CCGC	6 cut(s)	142, 395, 426, 498, 744, 935
SspI	AATATT	3 cut(s)	208, 798, 1222
SspMI	CTAG	2 cut(s)	279, 402
StyD4I	CCNGG	3 cut(s)	107, 289, 1253
TaaI	ACNGT	2 cut(s)	604, 1330
TaqI	TCGA	5 cut(s)	340, 348, 963, 1313, 1332
TatI	WGTACW	2 cut(s)	575, 926
TauI	GCSGC	2 cut(s)	398, 938
Tru1I	TTAA	5 cut(s)	74, 194, 369, 624, 824
Tru9I	TTAA	5 cut(s)	74, 194, 369, 624, 824
TseFI	GTSAC	1 cut(s)	604
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	8 cut(s)	461, 473, 536, 981, 1062, 1163, 1182, 1353
Tth111I	GACNNNGTC	1 cut(s)	782
Van91I	CCANNNNNTGG	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	710, 902
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	3 cut(s)	534, 694, 1006
XceI	RCATGY	2 cut(s)	248, 1346
XmiI	GTMKAC	1 cut(s)	1332
XspI	CTAG	2 cut(s)	279, 402
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.