Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Forward (+)

70179919 .. 70183335

Gene Structure 3417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG502300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTGTTGTATATATACTGAAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATCGAAACTTTCAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCAGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCAGATGTTCAAATGAACATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGAAGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAATTTCATACGCTTCTACTGCCATTAACCACCAGTTGGATTGTACTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCATCAATTAATATGTGTCCCCCTCCACCTCCTTCAGCAACAGCAGTTGCAGCTGGCATTGGACAAAAAGAAACACAAAATTTAGGCGGAGGAGGACCATCTGATTGCTCAGAAGGCAAAATTGATGGCGGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAACGAAACAATATTGGATCCAGCTGGGGCTCTGACTTTAAGTGGTGAAAGACAAAGCGATGATGATGATATCATGGGCGTCATTAGGGATGAGGATACCGGCAAACTTTTATGTGGTCCAAATAAAGTGATGACTACTTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCACACTCAAATTCAAAATCAAGTTATGGAGAAGCAGAAGCAGCTGCATTTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGCTCAGCAGCTGCTACTTGTAATTTTGATCAGCAGAAGCAGCAGCTTGATGGAATGAATGGAACATTGGATGATGAAATGAGATGGAATTGGGAGAGTGATATCCATATGCACGACTACTTATGGAATATTGATCAGAAAGACGATGAGAATATACTCTCTTGGTTATGGGAGCATCAGGCTGCAGAGGATCATCATGATGACCATAACAATAAATCGAGATCAGAGGCCACGGTCGACGATGAACATGTCCCAGCTGACAAGCATAATGCTATTCTTGCTTGGCTTCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

423

Amino Acids

46.36

Weight (kDa)

5.13

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 75	2.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	34 - 80	8.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
AccB7I	CCANNNNNTGG	2 cut(s)	399, 454
AccI	GTMKAC	1 cut(s)	1212
AciI	CCGC	6 cut(s)	31, 315, 384, 588, 630, 821
AclWI	GGATC	4 cut(s)	487, 683, 696, 1173
AcsI	RAATTY	3 cut(s)	420, 580, 892
AcuI	CTGAAG	2 cut(s)	39, 519
AcyI	GRCGYC	2 cut(s)	666, 750
AfaI	GTAC	2 cut(s)	463, 814
AfiI	CCNNNNNNNGG	2 cut(s)	399, 454
AflIII	ACRYGT	1 cut(s)	1222
AgsI	TTSAA	3 cut(s)	329, 649, 897
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	4 cut(s)	487, 683, 696, 1173
AlwNI	CAGNNNCTG	2 cut(s)	399, 986
AoxI	GGCC	3 cut(s)	353, 402, 1203
ApoI	RAATTY	3 cut(s)	420, 580, 892
AseI	ATTAAT	1 cut(s)	510
AspS9I	GGNCC	4 cut(s)	353, 402, 596, 788
AsuHPI	GGTGA	2 cut(s)	502, 728
AvaII	GGWCC	2 cut(s)	596, 788
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	703
BccI	CCATC	8 cut(s)	51, 470, 607, 620, 655, 929, 1019, 1053
BceAI	ACGGC	1 cut(s)	653
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	760
BclI	TGATCA	2 cut(s)	1003, 1108
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	168, 291
BfmI	CTRYAG	3 cut(s)	276, 816, 1158
BfuI	GTATCC	1 cut(s)	760
BlpI	GCTNAGC	1 cut(s)	979
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	596, 788
BmgT120I	GGNCC	4 cut(s)	353, 402, 596, 788
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	255, 850, 1159
Bpu1102I	GCTNAGC	1 cut(s)	979
BpuEI	CTTGAG	2 cut(s)	90, 244
BsaHI	GRCGYC	2 cut(s)	666, 750
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	1206
BsaXI	ACNNNNNCTCC	2 cut(s)	932, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 454
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	4 cut(s)	215, 393, 451, 950
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	1206
BseGI	GGATG	3 cut(s)	362, 766, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	399, 454
BseMII	CTCAG	5 cut(s)	44, 62, 624, 984, 993
BseNI	ACTGG	4 cut(s)	215, 393, 451, 950
BseRI	GAGGAG	4 cut(s)	93, 606, 848, 851
BseYI	CCCAGC	3 cut(s)	399, 695, 1228
Bsh1285I	CGRYCG	1 cut(s)	1212
BshFI	GGCC	3 cut(s)	355, 404, 1205
BsiEI	CGRYCG	1 cut(s)	1212
BsiSI	CCGG	1 cut(s)	771
BslFI	GGGAC	2 cut(s)	504, 1211
BslI	CCNNNNNNNGG	2 cut(s)	399, 454
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	504, 1211
BsnI	GGCC	3 cut(s)	355, 404, 1205
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
Bsp1720I	GCTNAGC	1 cut(s)	979
BspACI	CCGC	6 cut(s)	31, 315, 384, 588, 630, 821
BspANI	GGCC	3 cut(s)	355, 404, 1205
BspCNI	CTCAG	5 cut(s)	45, 63, 623, 983, 992
BspHI	TCATGA	3 cut(s)	829, 1171, 1268
BspLI	GGNNCC	1 cut(s)	690
BspMAI	CTGCAG	2 cut(s)	820, 1162
BspPI	GGATC	4 cut(s)	487, 683, 696, 1173
BspTNI	GGTCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	4 cut(s)	215, 393, 451, 950
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	1 cut(s)	1206
BssMI	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
BssNI	GRCGYC	2 cut(s)	666, 750
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	490, 1210
Bst6I	CTCTTC	3 cut(s)	35, 367, 373
BstACI	GRCGYC	2 cut(s)	666, 750
BstC8I	GCNNGC	3 cut(s)	135, 556, 976
BstDEI	CTNAG	5 cut(s)	53, 71, 610, 970, 979
BstDSI	CCRYGG	1 cut(s)	1206
BstF5I	GGATG	3 cut(s)	362, 766, 1051
BstKTI	GATC	7 cut(s)	482, 691, 853, 1006, 1111, 1168, 1199
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
BstMCI	CGRYCG	1 cut(s)	1212
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	2 cut(s)	137, 1226
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	3 cut(s)	276, 816, 1158
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	355, 404, 1205
BtgI	CCRYGG	1 cut(s)	1206
BtgZI	GCGATG	2 cut(s)	356, 744
BtsCI	GGATG	3 cut(s)	362, 766, 1051
Cac8I	GCNNGC	3 cut(s)	135, 556, 976
CaiI	CAGNNNCTG	2 cut(s)	399, 986
CciI	TCATGA	3 cut(s)	829, 1171, 1268
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	4 cut(s)	353, 402, 596, 788
CseI	GACGC	2 cut(s)	674, 739
Csp6I	GTAC	2 cut(s)	462, 813
CviAII	CATG	9 cut(s)	134, 337, 406, 745, 830, 957, 1172, 1223, 1269
CviQI	GTAC	2 cut(s)	462, 813
DdeI	CTNAG	5 cut(s)	53, 71, 610, 970, 979
DpnI	GATC	7 cut(s)	481, 690, 852, 1005, 1110, 1167, 1198
DpnII	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
Eam1104I	CTCTTC	3 cut(s)	35, 367, 373
EarI	CTCTTC	3 cut(s)	35, 367, 373
EciI	GGCGGA	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	703
Eco31I	GGTCTC	1 cut(s)	244
Eco32I	GATATC	3 cut(s)	118, 742, 1078
Eco47I	GGWCC	2 cut(s)	596, 788
Eco57I	CTGAAG	2 cut(s)	39, 519
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	3 cut(s)	118, 742, 1078
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	703
FaeI	CATG	9 cut(s)	137, 340, 409, 748, 833, 960, 1175, 1226, 1272
FaqI	GGGAC	2 cut(s)	504, 1211
FatI	CATG	9 cut(s)	133, 336, 405, 744, 829, 956, 1171, 1222, 1268
FauNDI	CATATG	2 cut(s)	270, 1083
FbaI	TGATCA	2 cut(s)	1003, 1108
FblI	GTMKAC	1 cut(s)	1212
FokI	GGATG	3 cut(s)	349, 773, 1058
FriOI	GRGCYC	1 cut(s)	703
FspBI	CTAG	2 cut(s)	168, 291
GsaI	CCCAGC	3 cut(s)	403, 699, 1232
HaeIII	GGCC	3 cut(s)	355, 404, 1205
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	2 cut(s)	674, 739
Hin1I	GRCGYC	2 cut(s)	666, 750
Hin1II	CATG	9 cut(s)	137, 340, 409, 748, 833, 960, 1175, 1226, 1272
HincII	GTYRAC	2 cut(s)	673, 1213
HindII	GTYRAC	2 cut(s)	673, 1213
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	2 cut(s)	502, 728
Hpy166II	GTNNAC	2 cut(s)	673, 1213
Hpy188I	TCNGA	7 cut(s)	72, 604, 613, 705, 855, 1113, 1201
Hpy188III	TCNNGA	6 cut(s)	107, 247, 830, 1172, 1194, 1269
Hpy8I	GTNNAC	2 cut(s)	673, 1213
Hpy99I	CGWCG	1 cut(s)	1217
HpyAV	CCTTC	3 cut(s)	14, 543, 608
HpyCH4III	ACNGT	2 cut(s)	490, 1210
HpyCH4V	TGCA	8 cut(s)	48, 133, 268, 551, 818, 929, 1087, 1160
HpyF3I	CTNAG	5 cut(s)	53, 71, 610, 970, 979
Hsp92I	GRCGYC	2 cut(s)	666, 750
Hsp92II	CATG	9 cut(s)	137, 340, 409, 748, 833, 960, 1175, 1226, 1272
Ksp22I	TGATCA	2 cut(s)	1003, 1108
Kzo9I	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
LmnI	GCTCC	2 cut(s)	838, 1147
LweI	GCATC	3 cut(s)	255, 850, 1159
MaeI	CTAG	2 cut(s)	168, 291
MaeIII	GTNAC	2 cut(s)	24, 490
MalI	GATC	7 cut(s)	481, 690, 852, 1005, 1110, 1167, 1198
MboI	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
MboII	GAAGA	7 cut(s)	52, 125, 195, 384, 390, 421, 424
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	703
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	383, 435
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	5 cut(s)	83, 258, 444, 510, 710
MslI	CAYNNNNRTG	3 cut(s)	341, 471, 1173
MspA1I	CMGCKG	6 cut(s)	554, 695, 821, 926, 986, 1232
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
NdeI	CATATG	2 cut(s)	270, 1083
NdeII	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
NlaIII	CATG	9 cut(s)	137, 340, 409, 748, 833, 960, 1175, 1226, 1272
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	2 cut(s)	137, 1226
PaeI	GCATGC	1 cut(s)	137
PagI	TCATGA	3 cut(s)	829, 1171, 1268
PciI	ACATGT	1 cut(s)	1222
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	2 cut(s)	399, 454
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	1222
PshBI	ATTAAT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	3 cut(s)	399, 695, 1228
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	4 cut(s)	353, 402, 596, 788
PstI	CTGCAG	2 cut(s)	820, 1162
PstNI	CAGNNNCTG	2 cut(s)	399, 986
PsuI	RGATCY	1 cut(s)	688
PsyI	GACNNNGTC	1 cut(s)	668
PvuII	CAGCTG	5 cut(s)	554, 695, 926, 986, 1232
RsaI	GTAC	2 cut(s)	463, 814
RsaNI	GTAC	2 cut(s)	462, 813
RseI	CAYNNNNRTG	3 cut(s)	341, 471, 1173
SalI	GTCGAC	1 cut(s)	1211
SaqAI	TTAA	5 cut(s)	83, 258, 444, 510, 710
Sau3AI	GATC	7 cut(s)	479, 688, 850, 1003, 1108, 1165, 1196
Sau96I	GGNCC	4 cut(s)	353, 402, 596, 788
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	3 cut(s)	255, 850, 1159
SfcI	CTRYAG	3 cut(s)	276, 816, 1158
SinI	GGWCC	2 cut(s)	596, 788
SmiMI	CAYNNNNRTG	3 cut(s)	341, 471, 1173
SmlI	CTYRAG	2 cut(s)	105, 223
SmoI	CTYRAG	2 cut(s)	105, 223
SphI	GCATGC	1 cut(s)	137
SsiI	CCGC	6 cut(s)	31, 315, 384, 588, 630, 821
SspI	AATATT	3 cut(s)	97, 684, 1105
SspMI	CTAG	2 cut(s)	168, 291
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	490, 1210
TaqI	TCGA	5 cut(s)	229, 237, 849, 1193, 1212
TatI	WGTACW	2 cut(s)	461, 812
TauI	GCSGC	1 cut(s)	824
Tru1I	TTAA	5 cut(s)	83, 258, 444, 510, 710
Tru9I	TTAA	5 cut(s)	83, 258, 444, 510, 710
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	9 cut(s)	347, 359, 414, 422, 867, 945, 1046, 1065, 1233
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	2 cut(s)	399, 454
VpaK11BI	GGWCC	2 cut(s)	596, 788
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	420, 580, 892
XceI	RCATGY	2 cut(s)	137, 1226
XmiI	GTMKAC	1 cut(s)	1212
XspI	CTAG	2 cut(s)	168, 291
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.