RH7DG487700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG487700.1

Sequence Viewer

Length: 1386 bp
ATGGGGAGGGCTCCGTGCTGCGAGAAAGTTGGGCTGAAGAAGGGGAGATGGACGGCAGAGGAGGATCAAACCTTAATCAACTACATCCATGCTAATGGGGAAGGCTCCTGGAGATCATTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATCGACACTTTCAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCGGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCAGATGTTCAAATGAATATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGAAGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAATTTCGTACGCTTCTACTGCCATCAACCACCATTTAGATTGTACTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCATCAATTAATATGTGTCCCCCTCCACCTCCTTCAGCAGCAGCAGTTGCAGCTGGCATTGGACAAAAAGAAACACAAAATTTAGGCGGAGGAGGACCATCTGATTGCTCAGAAGGCAAAATTGATGGCTGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAACGAAACAATATTGGATCCAGCTGGGGCTCTGACTTTAAGTGGTGAAAGACAAAGCGATGATAATGATATCATGGGCGTCATTAGGGATGAGGATACCGGCAAACTTTTATGTGGTCCAAATAAAGTGATGACTACTTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCACACTCAAATTCAAAATCAAGTTATTATGGAGAAGCAGAAGCAGCTGCATTTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGCTCAGCAGCTATTACTTGTAATTTTGATCAGCAGAAGCAGCAGCTTGATGGAATGAATGGAACATTGGATGATGAAATGAGATGGAATTGGGAGAGTGATATCCATATGCACGACTACTTATGGAATATTGATCAGAAAGACGATGAGAATATACTCTCTTGGTTATGGGAGCATCAGGCTGCAGAGGATCATCATGATGACCATAACAATAAATCGAGATCAGAGGCCACGGTCGACGATGAACATGTCCCAGCTGACAAGCATAATGCTATTCTTGCTTGGCTTCTATCATGA

Protein Analysis

461

Amino Acids

50.63

Weight (kDa)

5.49

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.1e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 510
AccI GTMKAC 1 cut(s) 1326
AciI CCGC 6 cut(s) 142, 395, 426, 495, 699, 932
AclWI GGATC 5 cut(s) 72, 598, 794, 807, 1287
AcsI RAATTY 3 cut(s) 531, 691, 1003
AcuI CTGAAG 2 cut(s) 56, 630
AcyI GRCGYC 2 cut(s) 777, 861
AfaI GTAC 3 cut(s) 539, 574, 925
AfiI CCNNNNNNNGG 1 cut(s) 510
AflIII ACRYGT 1 cut(s) 1336
AgsI TTSAA 3 cut(s) 440, 760, 1008
AjnI CCWGG 2 cut(s) 107, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 5 cut(s) 72, 598, 794, 807, 1287
AlwNI CAGNNNCTG 1 cut(s) 510
AoxI GGCC 3 cut(s) 464, 513, 1317
ApoI RAATTY 3 cut(s) 531, 691, 1003
AseI ATTAAT 1 cut(s) 621
AspS9I GGNCC 4 cut(s) 464, 513, 707, 899
AsuHPI GGTGA 2 cut(s) 613, 839
AvaII GGWCC 2 cut(s) 707, 899
BamHI GGATCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 13, 814
BceAI ACGGC 2 cut(s) 69, 764
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 109, 291
BciVI GTATCC 1 cut(s) 871
BclI TGATCA 2 cut(s) 1117, 1222
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 279, 402
BfmI CTRYAG 3 cut(s) 387, 927, 1272
BfuI GTATCC 1 cut(s) 871
BlpI GCTNAGC 1 cut(s) 1093
Bme1390I CCNGG 2 cut(s) 109, 291
Bme18I GGWCC 2 cut(s) 707, 899
BmgT120I GGNCC 4 cut(s) 464, 513, 707, 899
BmiI GGNNCC 3 cut(s) 12, 106, 801
BmrFI CCNGG 2 cut(s) 109, 291
BmsI GCATC 3 cut(s) 366, 961, 1273
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 1093
BpuEI CTTGAG 2 cut(s) 201, 355
BsaHI GRCGYC 2 cut(s) 777, 861
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 1320
BsaXI ACNNNNNCTCC 2 cut(s) 1046, 1076
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 3 cut(s) 326, 504, 1064
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 109, 291
BseDI CCNNGG 1 cut(s) 1320
BseGI GGATG 4 cut(s) 84, 473, 877, 1165
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 5 cut(s) 155, 173, 735, 1098, 1107
BseNI ACTGG 3 cut(s) 326, 504, 1064
BseRI GAGGAG 5 cut(s) 74, 204, 717, 959, 962
BseYI CCCAGC 3 cut(s) 510, 806, 1342
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 3 cut(s) 466, 515, 1319
BsiEI CGRYCG 1 cut(s) 1326
BsiSI CCGG 1 cut(s) 882
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 615, 1325
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 615, 1325
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 466, 515, 1319
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 13, 814
Bsp143I GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
Bsp1720I GCTNAGC 1 cut(s) 1093
BspACI CCGC 6 cut(s) 142, 395, 426, 495, 699, 932
BspANI GGCC 3 cut(s) 466, 515, 1319
BspCNI CTCAG 5 cut(s) 156, 174, 734, 1097, 1106
BspHI TCATGA 3 cut(s) 940, 1285, 1382
BspLI GGNNCC 3 cut(s) 12, 106, 801
BspMAI CTGCAG 2 cut(s) 931, 1276
BspPI GGATC 5 cut(s) 72, 598, 794, 807, 1287
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 3 cut(s) 326, 504, 1064
BssAI RCCGGY 1 cut(s) 881
BssECI CCNNGG 1 cut(s) 1320
BssMI GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
BssNI GRCGYC 2 cut(s) 777, 861
Bst2UI CCWGG 2 cut(s) 109, 291
Bst4CI ACNGT 2 cut(s) 601, 1324
Bst6I CTCTTC 3 cut(s) 146, 478, 484
BstACI GRCGYC 2 cut(s) 777, 861
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 246, 667, 1090
BstDEI CTNAG 5 cut(s) 164, 182, 721, 1084, 1093
BstDSI CCRYGG 1 cut(s) 1320
BstF5I GGATG 4 cut(s) 84, 473, 877, 1165
BstKTI GATC 9 cut(s) 67, 116, 593, 802, 964, 1120, 1225, 1282, 1313
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
BstMCI CGRYCG 1 cut(s) 1326
BstNI CCWGG 2 cut(s) 109, 291
BstNSI RCATGY 2 cut(s) 248, 1340
BstSCI CCNGG 2 cut(s) 107, 289
BstSFI CTRYAG 3 cut(s) 387, 927, 1272
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 799
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 3 cut(s) 466, 515, 1319
BtgI CCRYGG 1 cut(s) 1320
BtgZI GCGATG 2 cut(s) 467, 855
BtsCI GGATG 4 cut(s) 84, 473, 877, 1165
Cac8I GCNNGC 3 cut(s) 246, 667, 1090
CaiI CAGNNNCTG 1 cut(s) 510
CciI TCATGA 3 cut(s) 940, 1285, 1382
Cfr10I RCCGGY 1 cut(s) 881
Cfr13I GGNCC 4 cut(s) 464, 513, 707, 899
CseI GACGC 2 cut(s) 785, 850
Csp6I GTAC 3 cut(s) 538, 573, 924
CviAII CATG 9 cut(s) 89, 245, 517, 856, 941, 1071, 1286, 1337, 1383
CviQI GTAC 3 cut(s) 538, 573, 924
DdeI CTNAG 5 cut(s) 164, 182, 721, 1084, 1093
DpnI GATC 9 cut(s) 66, 115, 592, 801, 963, 1119, 1224, 1281, 1312
DpnII GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 146, 478, 484
EarI CTCTTC 3 cut(s) 146, 478, 484
EciI GGCGGA 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 13, 814
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 3 cut(s) 229, 853, 1192
Eco47I GGWCC 2 cut(s) 707, 899
Eco57I CTGAAG 2 cut(s) 56, 630
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 107, 289
EcoRV GATATC 3 cut(s) 229, 853, 1192
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 13, 814
FaeI CATG 9 cut(s) 92, 248, 520, 859, 944, 1074, 1289, 1340, 1386
FaqI GGGAC 2 cut(s) 615, 1325
FatI CATG 9 cut(s) 88, 244, 516, 855, 940, 1070, 1285, 1336, 1382
FauNDI CATATG 2 cut(s) 381, 1197
FbaI TGATCA 2 cut(s) 1117, 1222
FblI GTMKAC 1 cut(s) 1326
FokI GGATG 4 cut(s) 71, 460, 884, 1172
FriOI GRGCYC 2 cut(s) 13, 814
FspBI CTAG 2 cut(s) 279, 402
GsaI CCCAGC 3 cut(s) 514, 810, 1346
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 466, 515, 1319
HapII CCGG 1 cut(s) 882
HgaI GACGC 2 cut(s) 785, 850
Hin1I GRCGYC 2 cut(s) 777, 861
Hin1II CATG 9 cut(s) 92, 248, 520, 859, 944, 1074, 1289, 1340, 1386
HincII GTYRAC 2 cut(s) 784, 1327
HindII GTYRAC 2 cut(s) 784, 1327
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 882
HphI GGTGA 2 cut(s) 613, 839
Hpy166II GTNNAC 2 cut(s) 784, 1327
Hpy188I TCNGA 7 cut(s) 183, 715, 724, 816, 966, 1227, 1315
Hpy188III TCNNGA 6 cut(s) 218, 358, 941, 1286, 1308, 1383
Hpy8I GTNNAC 2 cut(s) 784, 1327
Hpy99I CGWCG 1 cut(s) 1331
HpyAV CCTTC 4 cut(s) 34, 95, 654, 719
HpyCH4III ACNGT 2 cut(s) 601, 1324
HpyCH4V TGCA 9 cut(s) 131, 159, 244, 379, 662, 929, 1043, 1201, 1274
HpyF3I CTNAG 5 cut(s) 164, 182, 721, 1084, 1093
Hsp92I GRCGYC 2 cut(s) 777, 861
Hsp92II CATG 9 cut(s) 92, 248, 520, 859, 944, 1074, 1289, 1340, 1386
Ksp22I TGATCA 2 cut(s) 1117, 1222
Kzo9I GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
LmnI GCTCC 4 cut(s) 16, 110, 949, 1261
LweI GCATC 3 cut(s) 366, 961, 1273
MaeI CTAG 2 cut(s) 279, 402
MaeIII GTNAC 2 cut(s) 135, 601
MalI GATC 9 cut(s) 66, 115, 592, 801, 963, 1119, 1224, 1281, 1312
MboI GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
MboII GAAGA 8 cut(s) 49, 163, 236, 306, 495, 501, 532, 535
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 13, 814
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 494
Mph1103I ATGCAT 1 cut(s) 381
MseI TTAA 5 cut(s) 74, 194, 369, 621, 821
MslI CAYNNNNRTG 3 cut(s) 93, 582, 1287
MspA1I CMGCKG 6 cut(s) 395, 665, 806, 932, 1040, 1346
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 2 cut(s) 109, 291
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 2 cut(s) 109, 291
NdeI CATATG 2 cut(s) 381, 1197
NdeII GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
NlaIII CATG 9 cut(s) 92, 248, 520, 859, 944, 1074, 1289, 1340, 1386
NlaIV GGNNCC 3 cut(s) 12, 106, 801
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 248, 1340
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 3 cut(s) 940, 1285, 1382
PciI ACATGT 1 cut(s) 1336
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PctI GAATGC 1 cut(s) 133
Pfl23II CGTACG 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 510
PfoI TCCNGGA 1 cut(s) 107
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 1336
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 107, 289
PspFI CCCAGC 3 cut(s) 510, 806, 1342
PspGI CCWGG 2 cut(s) 107, 289
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 12, 106, 801
PspPI GGNCC 4 cut(s) 464, 513, 707, 899
PstI CTGCAG 2 cut(s) 931, 1276
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 4 cut(s) 665, 806, 1040, 1346
RsaI GTAC 3 cut(s) 539, 574, 925
RsaNI GTAC 3 cut(s) 538, 573, 924
RseI CAYNNNNRTG 3 cut(s) 93, 582, 1287
SalI GTCGAC 1 cut(s) 1325
SaqAI TTAA 5 cut(s) 74, 194, 369, 621, 821
Sau3AI GATC 9 cut(s) 64, 113, 590, 799, 961, 1117, 1222, 1279, 1310
Sau96I GGNCC 4 cut(s) 464, 513, 707, 899
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 109, 291
SduI GDGCHC 2 cut(s) 13, 814
SfaNI GCATC 3 cut(s) 366, 961, 1273
SfcI CTRYAG 3 cut(s) 387, 927, 1272
SinI GGWCC 2 cut(s) 707, 899
SmiMI CAYNNNNRTG 3 cut(s) 93, 582, 1287
SmlI CTYRAG 2 cut(s) 216, 334
SmoI CTYRAG 2 cut(s) 216, 334
SphI GCATGC 1 cut(s) 248
SsiI CCGC 6 cut(s) 142, 395, 426, 495, 699, 932
SspI AATATT 3 cut(s) 208, 795, 1219
SspMI CTAG 2 cut(s) 279, 402
StyD4I CCNGG 2 cut(s) 107, 289
TaaI ACNGT 2 cut(s) 601, 1324
TaqI TCGA 5 cut(s) 340, 348, 960, 1307, 1326
TatI WGTACW 2 cut(s) 572, 923
TauI GCSGC 2 cut(s) 398, 935
Tru1I TTAA 5 cut(s) 74, 194, 369, 621, 821
Tru9I TTAA 5 cut(s) 74, 194, 369, 621, 821
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 8 cut(s) 458, 470, 533, 978, 1059, 1160, 1179, 1347
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 510
VpaK11BI GGWCC 2 cut(s) 707, 899
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 3 cut(s) 531, 691, 1003
XceI RCATGY 2 cut(s) 248, 1340
XmiI GTMKAC 1 cut(s) 1326
XspI CTAG 2 cut(s) 279, 402
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.