Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Reverse (-)

919951 .. 923343

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGGAGGGCTCCGTGCTGCGAGAAAGTTGGGCTGAAGAAGGGGAGATGGACGGCAGAGGAGGATCAAACCTTAATCAACTACATCCATGCAAATGGGGAAGGCTCCTGGAGATCATTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATCGACACTTTCAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCAGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCAGATGTTCAAATGAATATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGAAGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAATTTCGTACGCTTCTACTGCCATTAACCACCAGTTAGATTGTACTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCATCAATTAATATGTGTCCCCCACCTCCTTCAGCAGCAGCAGTTGCAGCTGGCATTGGACAAAAAGAAACACAAAATTTAGGCGGAGGAGGACCGTCTGATTTCTCAGAAGGCAAAATTGATGGCGGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAACGAAACAATATTGGATCCAGCTGGGGCTCTGACTTTAAGTGGTGAAAGACAAAGGGATGATGATGATATCATGGGCGTTATTAGGGATGACGATACCGGCAAACTTTTATGTGGTCCAAATAAATTGATGACTACTTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCACACTCAAATTCAAAATCAAGTTATGGAGAAGCAGAAGCAGCTGCATTTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGCTCAGCAGCTGCTACTTGTAATTTTGATCAGCAGAAGCAGCAGCTTGATGGAATGAATGGAACATTGGATGACGAAATGAGATGGAATTGGGAGAGTGATATCCATATGCACGACTACTTATGGAATATTGATCAGAAAGACGATGAGAATATACTCTCTCTGGTTATGGGAGCATCAGGCTGCCGAGGATCATCACGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

429

Amino Acids

46.62

Weight (kDa)

5.8

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.9e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	1.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	510
AciI	CCGC	6 cut(s)	142, 426, 495, 696, 738, 929
AclWI	GGATC	5 cut(s)	72, 598, 791, 804, 1282
AcsI	RAATTY	3 cut(s)	531, 688, 1000
AcuI	CTGAAG	2 cut(s)	56, 627
AcyI	GRCGYC	1 cut(s)	774
AfaI	GTAC	3 cut(s)	539, 574, 922
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	3 cut(s)	440, 757, 1005
AjnI	CCWGG	2 cut(s)	107, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	1133, 1165
AluBI	AGCT	9 cut(s)	278, 401, 609, 662, 803, 955, 1034, 1094, 1129
AluI	AGCT	9 cut(s)	278, 401, 609, 662, 803, 955, 1034, 1094, 1129
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	5 cut(s)	72, 598, 791, 804, 1282
AlwNI	CAGNNNCTG	2 cut(s)	510, 1094
AoxI	GGCC	2 cut(s)	464, 513
ApoI	RAATTY	3 cut(s)	531, 688, 1000
AseI	ATTAAT	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	464, 513, 704, 896
AsuHPI	GGTGA	2 cut(s)	613, 836
AvaII	GGWCC	2 cut(s)	704, 896
BamHI	GGATCC	1 cut(s)	796
BanII	GRGCYC	2 cut(s)	13, 811
BccI	CCATC	8 cut(s)	42, 162, 581, 728, 763, 1037, 1127, 1161
BceAI	ACGGC	2 cut(s)	69, 761
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	2 cut(s)	109, 291
BclI	TGATCA	2 cut(s)	1111, 1216
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	279, 402
BfmI	CTRYAG	2 cut(s)	387, 924
BlpI	GCTNAGC	1 cut(s)	1087
Bme1390I	CCNGG	2 cut(s)	109, 291
Bme18I	GGWCC	2 cut(s)	704, 896
BmgT120I	GGNCC	4 cut(s)	464, 513, 704, 896
BmiI	GGNNCC	3 cut(s)	12, 106, 798
BmrFI	CCNGG	2 cut(s)	109, 291
BmsI	GCATC	3 cut(s)	366, 958, 1268
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	1087
BpuEI	CTTGAG	2 cut(s)	201, 355
BsaHI	GRCGYC	1 cut(s)	774
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	1270
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	4 cut(s)	326, 504, 562, 1058
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	109, 291
BseDI	CCNNGG	1 cut(s)	1270
BseGI	GGATG	5 cut(s)	84, 473, 844, 874, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	5 cut(s)	155, 173, 732, 1092, 1101
BseNI	ACTGG	4 cut(s)	326, 504, 562, 1058
BseRI	GAGGAG	5 cut(s)	74, 204, 714, 956, 959
BseYI	CCCAGC	2 cut(s)	510, 803
BshFI	GGCC	2 cut(s)	466, 515
BsiSI	CCGG	1 cut(s)	879
BsiWI	CGTACG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	466, 515
Bso31I	GGTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	13, 811
Bsp143I	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
Bsp1720I	GCTNAGC	1 cut(s)	1087
BspACI	CCGC	6 cut(s)	142, 426, 495, 696, 738, 929
BspANI	GGCC	2 cut(s)	466, 515
BspCNI	CTCAG	5 cut(s)	156, 174, 731, 1091, 1100
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	3 cut(s)	12, 106, 798
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	5 cut(s)	72, 598, 791, 804, 1282
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	4 cut(s)	326, 504, 562, 1058
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	1 cut(s)	1270
BssMI	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
BssNI	GRCGYC	1 cut(s)	774
Bst2UI	CCWGG	2 cut(s)	109, 291
Bst4CI	ACNGT	2 cut(s)	601, 708
Bst6I	CTCTTC	3 cut(s)	146, 478, 484
BstACI	GRCGYC	1 cut(s)	774
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	3 cut(s)	246, 664, 1084
BstDEI	CTNAG	5 cut(s)	164, 182, 718, 1078, 1087
BstF5I	GGATG	5 cut(s)	84, 473, 844, 874, 1159
BstKTI	GATC	8 cut(s)	67, 116, 593, 799, 961, 1114, 1219, 1277
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
BstMWI	GCNNNNNNNGC	9 cut(s)	392, 398, 414, 548, 656, 659, 1031, 1088, 1123
BstNI	CCWGG	2 cut(s)	109, 291
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	107, 289
BstSFI	CTRYAG	2 cut(s)	387, 924
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	466, 515
BtgZI	GCGATG	1 cut(s)	467
BtsCI	GGATG	5 cut(s)	84, 473, 844, 874, 1159
Cac8I	GCNNGC	3 cut(s)	246, 664, 1084
CaiI	CAGNNNCTG	2 cut(s)	510, 1094
CciI	TCATGA	1 cut(s)	937
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	464, 513, 704, 896
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	3 cut(s)	538, 573, 921
CviAII	CATG	6 cut(s)	89, 245, 517, 853, 938, 1065
CviQI	GTAC	3 cut(s)	538, 573, 921
DdeI	CTNAG	5 cut(s)	164, 182, 718, 1078, 1087
DpnI	GATC	8 cut(s)	66, 115, 592, 798, 960, 1113, 1218, 1276
DpnII	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	3 cut(s)	146, 478, 484
EarI	CTCTTC	3 cut(s)	146, 478, 484
EciI	GGCGGA	1 cut(s)	711
Eco24I	GRGCYC	2 cut(s)	13, 811
Eco31I	GGTCTC	1 cut(s)	355
Eco32I	GATATC	3 cut(s)	229, 850, 1186
Eco47I	GGWCC	2 cut(s)	704, 896
Eco57I	CTGAAG	2 cut(s)	56, 627
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	107, 289
EcoRV	GATATC	3 cut(s)	229, 850, 1186
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	13, 811
FaeI	CATG	6 cut(s)	92, 248, 520, 856, 941, 1068
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	6 cut(s)	88, 244, 516, 852, 937, 1064
FauNDI	CATATG	2 cut(s)	381, 1191
FbaI	TGATCA	2 cut(s)	1111, 1216
FokI	GGATG	5 cut(s)	71, 460, 851, 881, 1166
FriOI	GRGCYC	2 cut(s)	13, 811
FspBI	CTAG	2 cut(s)	279, 402
GsaI	CCCAGC	2 cut(s)	514, 807
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	466, 515
HapII	CCGG	1 cut(s)	879
HgaI	GACGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	774
Hin1II	CATG	6 cut(s)	92, 248, 520, 856, 941, 1068
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	879
HphI	GGTGA	2 cut(s)	613, 836
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	6 cut(s)	183, 712, 721, 813, 963, 1221
Hpy188III	TCNNGA	4 cut(s)	218, 358, 938, 1281
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	4 cut(s)	34, 95, 651, 716
HpyCH4III	ACNGT	2 cut(s)	601, 708
HpyCH4V	TGCA	9 cut(s)	92, 131, 159, 244, 379, 659, 926, 1037, 1195
HpyF10VI	GCNNNNNNNGC	9 cut(s)	392, 398, 414, 548, 656, 659, 1031, 1088, 1123
HpyF3I	CTNAG	5 cut(s)	164, 182, 718, 1078, 1087
Hsp92I	GRCGYC	1 cut(s)	774
Hsp92II	CATG	6 cut(s)	92, 248, 520, 856, 941, 1068
Ksp22I	TGATCA	2 cut(s)	1111, 1216
Kzo9I	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
LmnI	GCTCC	4 cut(s)	16, 110, 946, 1256
LweI	GCATC	3 cut(s)	366, 958, 1268
MaeI	CTAG	2 cut(s)	279, 402
MaeIII	GTNAC	2 cut(s)	135, 601
MalI	GATC	8 cut(s)	66, 115, 592, 798, 960, 1113, 1218, 1276
MboI	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
MboII	GAAGA	8 cut(s)	49, 163, 236, 306, 495, 501, 532, 535
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	2 cut(s)	13, 811
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	6 cut(s)	74, 194, 369, 555, 621, 818
MslI	CAYNNNNRTG	2 cut(s)	93, 582
MspA1I	CMGCKG	5 cut(s)	662, 803, 929, 1034, 1094
MspI	CCGG	1 cut(s)	879
MspR9I	CCNGG	2 cut(s)	109, 291
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	109, 291
MwoI	GCNNNNNNNGC	9 cut(s)	392, 398, 414, 548, 656, 659, 1031, 1088, 1123
NdeI	CATATG	2 cut(s)	381, 1191
NdeII	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
NlaIII	CATG	6 cut(s)	92, 248, 520, 856, 941, 1068
NlaIV	GGNNCC	3 cut(s)	12, 106, 798
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	1 cut(s)	780
PctI	GAATGC	1 cut(s)	133
Pfl23II	CGTACG	1 cut(s)	537
PflFI	GACNNNGTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	510
PfoI	TCCNGGA	1 cut(s)	107
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	107, 289
PspFI	CCCAGC	2 cut(s)	510, 803
PspGI	CCWGG	2 cut(s)	107, 289
PspLI	CGTACG	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	12, 106, 798
PspPI	GGNCC	4 cut(s)	464, 513, 704, 896
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	2 cut(s)	510, 1094
PsuI	RGATCY	1 cut(s)	796
PsyI	GACNNNGTC	1 cut(s)	776
PvuII	CAGCTG	4 cut(s)	662, 803, 1034, 1094
RsaI	GTAC	3 cut(s)	539, 574, 922
RsaNI	GTAC	3 cut(s)	538, 573, 921
RseI	CAYNNNNRTG	2 cut(s)	93, 582
SaqAI	TTAA	6 cut(s)	74, 194, 369, 555, 621, 818
Sau3AI	GATC	8 cut(s)	64, 113, 590, 796, 958, 1111, 1216, 1274
Sau96I	GGNCC	4 cut(s)	464, 513, 704, 896
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	109, 291
SduI	GDGCHC	2 cut(s)	13, 811
SfaNI	GCATC	3 cut(s)	366, 958, 1268
SfcI	CTRYAG	2 cut(s)	387, 924
SinI	GGWCC	2 cut(s)	704, 896
SmiMI	CAYNNNNRTG	2 cut(s)	93, 582
SmlI	CTYRAG	2 cut(s)	216, 334
SmoI	CTYRAG	2 cut(s)	216, 334
SphI	GCATGC	1 cut(s)	248
SsiI	CCGC	6 cut(s)	142, 426, 495, 696, 738, 929
SspI	AATATT	3 cut(s)	208, 792, 1213
SspMI	CTAG	2 cut(s)	279, 402
StyD4I	CCNGG	2 cut(s)	107, 289
TaaI	ACNGT	2 cut(s)	601, 708
TaqI	TCGA	3 cut(s)	340, 348, 957
TatI	WGTACW	2 cut(s)	572, 920
TauI	GCSGC	1 cut(s)	932
Tru1I	TTAA	6 cut(s)	74, 194, 369, 555, 621, 818
Tru9I	TTAA	6 cut(s)	74, 194, 369, 555, 621, 818
TseFI	GTSAC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	6 cut(s)	458, 470, 533, 975, 1053, 1154
Tth111I	GACNNNGTC	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	510
VpaK11BI	GGWCC	2 cut(s)	704, 896
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	3 cut(s)	531, 688, 1000
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	2 cut(s)	279, 402
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.