Rw7G042460
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
66081472 .. 66084785
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042460.1

Sequence Viewer

Length: 1392 bp
ATGGGGAGGGCTCCGTGCTGCGAGAAAGTTGGGCTGAAGAAGGGGAGATGGACGGCAGAGGAGGATCAAACCTTAATCAACTACATCCATGCTAATGGGGAAGGCTCCTGGAGATCATTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATCGACACTTTCAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCGGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCAGATGTTCAAATGAATATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGAAGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAATTTCGTACGCTTCTACTGCCATCAACCACCATTTAGATTGTATTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCGTCAATTAATATGTGTCCCCCTCCACCTCCTTCAGCAGCAGCAGTCGCAGCTGGCATTGGACAAAAAGAAACACAAAATTTAGGAGGAGGAAGACCATCTGATTGCTCAGAAGGAAAAATTGATGGCGGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAACGAAACAATATTGGATCCAGCTGGGGCTCTGACTTTAAGTGGTGAAAGACAAAGCGATGATGATGATGATATCATGGGCGTCATTAGGGATGAGGATACCGGCAAAATTTTATGTGGTCCAAATAAAGTGATGACTACTTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCACACTCAAATTCAAAATCAAGTTATTATGGAGAAGCAGAAGCAGCTGCATTTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGCTCAGCAGCTGCTACTTGTAATTTTGATCAGCAGAAGCAGCAGTATGATGGAATGAATGGAACATTGGATGATGAAATGAGATGGAATTGGGAGAGCGATATCCATATGCACGACTACTTATGGAATATTGATCAGAAAGACGATGAGAATATACTCTCCTGGTTATGGGAGCATCAGGCTGCAGAGGATCACCATGATGACCACCATAACAATAAATCGAGATCAGAGGCCACGGTCGACGATGAACATGTCCCAGCTGACAAGCATAATGCTATTCTTGCTTGGCTTTTATCATGA

Protein Analysis

463

Amino Acids

50.95

Weight (kDa)

5.48

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.1e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 510
AccI GTMKAC 1 cut(s) 1332
AciI CCGC 6 cut(s) 142, 395, 426, 495, 741, 935
AclWI GGATC 5 cut(s) 72, 598, 794, 807, 1290
AcsI RAATTY 4 cut(s) 531, 691, 891, 1006
AcuI CTGAAG 2 cut(s) 56, 630
AcyI GRCGYC 2 cut(s) 777, 864
AfaI GTAC 2 cut(s) 539, 928
AfiI CCNNNNNNNGG 2 cut(s) 510, 1260
AflIII ACRYGT 1 cut(s) 1342
AgsI TTSAA 3 cut(s) 440, 760, 1011
AjnI CCWGG 3 cut(s) 107, 289, 1253
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
AluBI AGCT 9 cut(s) 278, 401, 609, 665, 806, 961, 1043, 1103, 1352
AluI AGCT 9 cut(s) 278, 401, 609, 665, 806, 961, 1043, 1103, 1352
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 5 cut(s) 72, 598, 794, 807, 1290
AlwNI CAGNNNCTG 2 cut(s) 510, 1103
AoxI GGCC 3 cut(s) 464, 513, 1323
ApoI RAATTY 4 cut(s) 531, 691, 891, 1006
AseI ATTAAT 1 cut(s) 621
AspS9I GGNCC 3 cut(s) 464, 513, 902
AsuHPI GGTGA 3 cut(s) 613, 839, 1277
AvaII GGWCC 1 cut(s) 902
BamHI GGATCC 1 cut(s) 799
BanII GRGCYC 2 cut(s) 13, 814
BbsI GAAGAC 1 cut(s) 712
BceAI ACGGC 2 cut(s) 69, 764
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 3 cut(s) 109, 291, 1255
BciVI GTATCC 1 cut(s) 874
BclI TGATCA 2 cut(s) 1120, 1225
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 279, 402
BfmI CTRYAG 3 cut(s) 387, 930, 1275
BfuI GTATCC 1 cut(s) 874
BlpI GCTNAGC 1 cut(s) 1096
Bme1390I CCNGG 3 cut(s) 109, 291, 1255
Bme18I GGWCC 1 cut(s) 902
BmgT120I GGNCC 3 cut(s) 464, 513, 902
BmiI GGNNCC 3 cut(s) 12, 106, 801
BmrFI CCNGG 3 cut(s) 109, 291, 1255
BmsI GCATC 3 cut(s) 366, 964, 1276
BpiI GAAGAC 1 cut(s) 712
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 1096
BpuEI CTTGAG 2 cut(s) 201, 355
BsaHI GRCGYC 2 cut(s) 777, 864
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 1326
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 1260
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 3 cut(s) 326, 504, 1067
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 3 cut(s) 109, 291, 1255
BseDI CCNNGG 1 cut(s) 1326
BseGI GGATG 4 cut(s) 84, 473, 880, 1168
BseLI CCNNNNNNNGG 2 cut(s) 510, 1260
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 5 cut(s) 155, 173, 735, 1101, 1110
BseNI ACTGG 3 cut(s) 326, 504, 1067
BseRI GAGGAG 5 cut(s) 74, 204, 714, 962, 965
BseYI CCCAGC 3 cut(s) 510, 806, 1348
Bsh1285I CGRYCG 1 cut(s) 1332
BshFI GGCC 3 cut(s) 466, 515, 1325
BsiEI CGRYCG 1 cut(s) 1332
BsiSI CCGG 1 cut(s) 885
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 615, 1331
BslI CCNNNNNNNGG 2 cut(s) 510, 1260
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 615, 1331
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 466, 515, 1325
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 13, 814
Bsp143I GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
Bsp1720I GCTNAGC 1 cut(s) 1096
BspACI CCGC 6 cut(s) 142, 395, 426, 495, 741, 935
BspANI GGCC 3 cut(s) 466, 515, 1325
BspCNI CTCAG 5 cut(s) 156, 174, 734, 1100, 1109
BspHI TCATGA 2 cut(s) 943, 1388
BspLI GGNNCC 3 cut(s) 12, 106, 801
BspMAI CTGCAG 2 cut(s) 934, 1279
BspPI GGATC 5 cut(s) 72, 598, 794, 807, 1290
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 3 cut(s) 326, 504, 1067
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 1 cut(s) 1326
BssMI GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
BssNI GRCGYC 2 cut(s) 777, 864
Bst2UI CCWGG 3 cut(s) 109, 291, 1255
Bst4CI ACNGT 2 cut(s) 601, 1330
Bst6I CTCTTC 3 cut(s) 146, 478, 484
BstACI GRCGYC 2 cut(s) 777, 864
BstC8I GCNNGC 3 cut(s) 246, 667, 1093
BstDEI CTNAG 5 cut(s) 164, 182, 721, 1087, 1096
BstDSI CCRYGG 1 cut(s) 1326
BstF5I GGATG 4 cut(s) 84, 473, 880, 1168
BstKTI GATC 9 cut(s) 67, 116, 593, 802, 967, 1123, 1228, 1285, 1319
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
BstMCI CGRYCG 1 cut(s) 1332
BstNI CCWGG 3 cut(s) 109, 291, 1255
BstNSI RCATGY 2 cut(s) 248, 1346
BstSCI CCNGG 3 cut(s) 107, 289, 1253
BstSFI CTRYAG 3 cut(s) 387, 930, 1275
BstV2I GAAGAC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 799
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 466, 515, 1325
BtgI CCRYGG 1 cut(s) 1326
BtgZI GCGATG 2 cut(s) 467, 855
BtsCI GGATG 4 cut(s) 84, 473, 880, 1168
Cac8I GCNNGC 3 cut(s) 246, 667, 1093
CaiI CAGNNNCTG 2 cut(s) 510, 1103
CciI TCATGA 2 cut(s) 943, 1388
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 3 cut(s) 464, 513, 902
CseI GACGC 2 cut(s) 785, 853
Csp6I GTAC 2 cut(s) 538, 927
CviAII CATG 9 cut(s) 89, 245, 517, 859, 944, 1074, 1289, 1343, 1389
CviQI GTAC 2 cut(s) 538, 927
DdeI CTNAG 5 cut(s) 164, 182, 721, 1087, 1096
DpnI GATC 9 cut(s) 66, 115, 592, 801, 966, 1122, 1227, 1284, 1318
DpnII GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 146, 478, 484
EarI CTCTTC 3 cut(s) 146, 478, 484
Eco24I GRGCYC 2 cut(s) 13, 814
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 3 cut(s) 229, 856, 1195
Eco47I GGWCC 1 cut(s) 902
Eco57I CTGAAG 2 cut(s) 56, 630
EcoO109I RGGNCCY 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 107, 289, 1253
EcoRV GATATC 3 cut(s) 229, 856, 1195
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 13, 814
FaeI CATG 9 cut(s) 92, 248, 520, 862, 947, 1077, 1292, 1346, 1392
FaqI GGGAC 2 cut(s) 615, 1331
FatI CATG 9 cut(s) 88, 244, 516, 858, 943, 1073, 1288, 1342, 1388
FauNDI CATATG 2 cut(s) 381, 1200
FbaI TGATCA 2 cut(s) 1120, 1225
FblI GTMKAC 1 cut(s) 1332
FokI GGATG 4 cut(s) 71, 460, 887, 1175
FriOI GRGCYC 2 cut(s) 13, 814
FspBI CTAG 2 cut(s) 279, 402
GsaI CCCAGC 3 cut(s) 514, 810, 1352
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 466, 515, 1325
HapII CCGG 1 cut(s) 885
HgaI GACGC 2 cut(s) 785, 853
Hin1I GRCGYC 2 cut(s) 777, 864
Hin1II CATG 9 cut(s) 92, 248, 520, 862, 947, 1077, 1292, 1346, 1392
HincII GTYRAC 2 cut(s) 784, 1333
HindII GTYRAC 2 cut(s) 784, 1333
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 885
HphI GGTGA 3 cut(s) 613, 839, 1277
Hpy166II GTNNAC 2 cut(s) 784, 1333
Hpy188I TCNGA 7 cut(s) 183, 715, 724, 816, 969, 1230, 1321
Hpy188III TCNNGA 5 cut(s) 218, 358, 944, 1314, 1389
Hpy8I GTNNAC 2 cut(s) 784, 1333
Hpy99I CGWCG 2 cut(s) 616, 1337
HpyAV CCTTC 4 cut(s) 34, 95, 654, 719
HpyCH4III ACNGT 2 cut(s) 601, 1330
HpyCH4V TGCA 8 cut(s) 131, 159, 244, 379, 932, 1046, 1204, 1277
HpyF3I CTNAG 5 cut(s) 164, 182, 721, 1087, 1096
Hsp92I GRCGYC 2 cut(s) 777, 864
Hsp92II CATG 9 cut(s) 92, 248, 520, 862, 947, 1077, 1292, 1346, 1392
Ksp22I TGATCA 2 cut(s) 1120, 1225
Kzo9I GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
LmnI GCTCC 4 cut(s) 16, 110, 952, 1264
LweI GCATC 3 cut(s) 366, 964, 1276
MaeI CTAG 2 cut(s) 279, 402
MaeIII GTNAC 2 cut(s) 135, 601
MalI GATC 9 cut(s) 66, 115, 592, 801, 966, 1122, 1227, 1284, 1318
MboI GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
MboII GAAGA 9 cut(s) 49, 163, 236, 306, 495, 501, 532, 535, 717
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 2 cut(s) 13, 814
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 494
Mph1103I ATGCAT 1 cut(s) 381
MseI TTAA 5 cut(s) 74, 194, 369, 621, 821
MslI CAYNNNNRTG 3 cut(s) 93, 582, 1290
MspA1I CMGCKG 7 cut(s) 395, 665, 806, 935, 1043, 1103, 1352
MspI CCGG 1 cut(s) 885
MspR9I CCNGG 3 cut(s) 109, 291, 1255
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 109, 291, 1255
NdeI CATATG 2 cut(s) 381, 1200
NdeII GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
NlaIII CATG 9 cut(s) 92, 248, 520, 862, 947, 1077, 1292, 1346, 1392
NlaIV GGNNCC 3 cut(s) 12, 106, 801
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 248, 1346
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 2 cut(s) 943, 1388
PciI ACATGT 1 cut(s) 1342
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PctI GAATGC 1 cut(s) 133
Pfl23II CGTACG 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 510
PfoI TCCNGGA 1 cut(s) 107
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 1342
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 3 cut(s) 107, 289, 1253
PspFI CCCAGC 3 cut(s) 510, 806, 1348
PspGI CCWGG 3 cut(s) 107, 289, 1253
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 12, 106, 801
PspPI GGNCC 3 cut(s) 464, 513, 902
PstI CTGCAG 2 cut(s) 934, 1279
PstNI CAGNNNCTG 2 cut(s) 510, 1103
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 5 cut(s) 665, 806, 1043, 1103, 1352
RsaI GTAC 2 cut(s) 539, 928
RsaNI GTAC 2 cut(s) 538, 927
RseI CAYNNNNRTG 3 cut(s) 93, 582, 1290
SalI GTCGAC 1 cut(s) 1331
SaqAI TTAA 5 cut(s) 74, 194, 369, 621, 821
Sau3AI GATC 9 cut(s) 64, 113, 590, 799, 964, 1120, 1225, 1282, 1316
Sau96I GGNCC 3 cut(s) 464, 513, 902
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 3 cut(s) 109, 291, 1255
SduI GDGCHC 2 cut(s) 13, 814
SfaNI GCATC 3 cut(s) 366, 964, 1276
SfcI CTRYAG 3 cut(s) 387, 930, 1275
SinI GGWCC 1 cut(s) 902
SmiMI CAYNNNNRTG 3 cut(s) 93, 582, 1290
SmlI CTYRAG 2 cut(s) 216, 334
SmoI CTYRAG 2 cut(s) 216, 334
SphI GCATGC 1 cut(s) 248
SsiI CCGC 6 cut(s) 142, 395, 426, 495, 741, 935
SspI AATATT 3 cut(s) 208, 795, 1222
SspMI CTAG 2 cut(s) 279, 402
StyD4I CCNGG 3 cut(s) 107, 289, 1253
TaaI ACNGT 2 cut(s) 601, 1330
TaqI TCGA 5 cut(s) 340, 348, 963, 1313, 1332
TatI WGTACW 1 cut(s) 926
TauI GCSGC 2 cut(s) 398, 938
Tru1I TTAA 5 cut(s) 74, 194, 369, 621, 821
Tru9I TTAA 5 cut(s) 74, 194, 369, 621, 821
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 9 cut(s) 458, 470, 533, 566, 981, 1062, 1163, 1182, 1353
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 902
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 4 cut(s) 531, 691, 891, 1006
XceI RCATGY 2 cut(s) 248, 1346
XmiI GTMKAC 1 cut(s) 1332
XspI CTAG 2 cut(s) 279, 402
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.