Rh2AG073100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012713
Physical Location & Seq
Forward (+)
6129973 .. 6136367
6395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG073100.1

Sequence Viewer

Length: 339 bp
ATGCATACGTGGTGCAGTGCTGCAACATATTATGAAGGGCGAGTGTTCTCAGTTCGTGGTTTTGGAAGAGATATCCCAGGGCACGAGCTTGTATCATACTGCGTTGATAGCAGCGTTGACATATATTACAGTAGTTTACATCTGCAACATGTGGCATGGCTTGAACATTTCTCTGTATGTGTGACGGTGTTAGCCATGGGAAGAGCTCCATGCTGTGACAAATCTAAAGTGAAAAGAGGACCATGGTCTCCAGAAGAAGACGCCACCCTCAAGAACTACCTCCACGAACATGGCACCACTGGCAATTGGATTACTCTCCCAACCAGAGCAGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

112

Amino Acids

12.56

Weight (kDa)

6.63

Isoelectric Point (pI)

24.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 79 - 106 2.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47460 AT3G62610
fragaria_vesca FvH4_5g39550
malus_domestica MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis pycom03g23560 pycom11g27640
rosa_chinensis RchiOBHm_Chr7g0241861
rosa_laevigata RLG00000000537
rosa_multiflora Rmu_sc0001865.1_g000006
rosa_roxburghii Rroxscaffold_3G00218590
rosa_rugosa Rorug07G0348100
rosa_samantha Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana Rw7G042460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 88, 206
AluI AGCT 2 cut(s) 88, 206
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 20, 111
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 7, 123
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 2 cut(s) 21, 112
BlsI GCNGC 2 cut(s) 22, 113
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 76, 77, 195, 242
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 4 cut(s) 76, 77, 195, 242
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 7, 123
BsgI GTGCAG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 84, 208
Bsp19I CCATGG 2 cut(s) 195, 242
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 76, 77, 195, 242
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 195, 242
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 131, 187
Bst6I CTCTTC 2 cut(s) 61, 196
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 2 cut(s) 195, 242
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 108, 300
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 7, 123
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 290
BtgI CCRYGG 2 cut(s) 195, 242
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 297
BveI ACCTGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 269
CviAII CATG 6 cut(s) 149, 156, 196, 210, 243, 290
CviJI RGCY 4 cut(s) 88, 160, 194, 206
CviKI_1 RGCY 4 cut(s) 88, 160, 194, 206
DdeI CTNAG 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 61, 196
EarI CTCTTC 2 cut(s) 61, 196
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 195, 242
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 195, 242
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 2 cut(s) 195, 242
FaeI CATG 6 cut(s) 152, 159, 199, 213, 246, 293
FatI CATG 6 cut(s) 148, 155, 195, 209, 242, 289
Fnu4HI GCNGC 2 cut(s) 21, 112
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 21, 112
GluI GCNGC 2 cut(s) 21, 112
GsuI CTGGAG 1 cut(s) 234
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 152, 159, 199, 213, 246, 293
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 118, 137
Hpy188III TCNNGA 2 cut(s) 251, 271
Hpy8I GTNNAC 2 cut(s) 118, 137
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 131, 187
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 4, 15, 23, 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 300
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 152, 159, 199, 213, 246, 293
LguI GCTCTTC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 63, 90, 264, 285, 315
Lsp1109I GCAGC 2 cut(s) 7, 123
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 181, 215
MboII GAAGA 4 cut(s) 78, 213, 266, 269
MfeI CAATTG 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 84, 208
MluCI AATT 1 cut(s) 304
MnlI CCTC 3 cut(s) 230, 278, 290
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 337
MslI CAYNNNNRTG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 108, 300
NcoI CCATGG 2 cut(s) 195, 242
NlaIII CATG 6 cut(s) 152, 159, 199, 213, 246, 293
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 181, 215
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 320
PasI CCCWGGG 1 cut(s) 77
PciI ACATGT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 22, 113
Ppu21I YACGTR 1 cut(s) 9
PscI ACATGT 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 2 cut(s) 21, 112
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 84, 208
SetI ASST 5 cut(s) 11, 90, 208, 282, 334
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 304
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 195, 242
TaaI ACNGT 2 cut(s) 131, 187
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 304
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TscAI CASTG 2 cut(s) 22, 304
TseFI GTSAC 2 cut(s) 181, 215
TseI GCWGC 2 cut(s) 20, 111
Tsp45I GTSAC 2 cut(s) 181, 215
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 2 cut(s) 22, 304
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.