FvH4_5g39550
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
29175010 .. 29177807
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39550.t1

Sequence Viewer

Length: 1404 bp
ATGGGGAGGGCTCCGTGCTGCGAGAAAGTTGGGTTGAAGAAGGGAAGATGGACAGCAGAGGAGGATCAAACCTTAATCAACTACATCCGTGCTAATGGGGAAGGCTCCTGGAGATCGTTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAGCTGACTTGAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGTGGTCTTTGATAGCTAGTCAATTACCGGGAAGAACGGACAATGAGATAAAGAACTACTGGAACTCGCACTTGAGTCGAAAAATAGACGCTTTCAGGAGACCTATTAATAAGATCCATATGCCTTCAGCATCAGCAGCAGCAGCAGCTAGTAGTAGCAGCAGCACCACCACCGCAGCAGATGAAATCAATATGGCGATGAAATTAGGACCACCCTCGTCCAAGCGAAGAGGAAGAGGTGGCAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAGTCACCTACGCTTCTACAGCCATCAACCACCACTTGGATTCATGCACTCATAATCATGATGATAAATCGGCAACGATGACGAGCTCGTCTTCCCCTCCACCTCCTTCCGCAGCAGCAGCAGCAGTTGCGGCTGGCACCGGACAAAAAGAAACACAAGCATTAGTCGGAGGAGGACCATCTGATGGCTCAGCTGCAGGTAAATTTGATGACGGTGGGGAGGTGGCTTTCAATGACTTGATGATGGACGTCGCCAATGAAATAATATCGGATCCAACTGGGGTGCTGACTTTAATTGGTGAAAAACAAAACGACGATGGTGATGATGACACGGGCGTTATTAGGGACGACGAGGACACCGGCAAACTTTTATGTGGTCCAAATAAAGTGATGACTAATGCTACTGCAGCGGCTAGTCATGAAGAGGAACATCATCAGCTCGATCAGATTAGTGCTACTAATTTAAGCTCATCATCAAACTCAAATTCCAAATCAAGTTATGGAGAAGCGGAAGCAGCTGCGTTTGATGGGGATGACTGGTATAATTCATGCTCTAATTACTCACCAGGCTCAGCAGCTGCTGCTACTTGTAAGTTTGATCAGCAGAAGCAGCAGCGTGATGGAATTAATGGAACAGTGAATGATGAAATGACATGGGATTGGGAGAGTGATATCCATAGGTACGACTACTTATGGAATGTTGATCAGAAAGATGATGAGAATATGCTCTCTTGGTTATGGGAGCAGCACGCTGCAGATGATCATCATCTTGACCATAGCAATAAATCGAGATCAAAGGCCGTGGTGGTCGATGATGACTGTGACCCGGCTGACAAGCATAATGCTATTCTGGCTTGGCTTCTATCTTGA

Protein Analysis

468

Amino Acids

50.86

Weight (kDa)

5.52

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 8.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 8.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.9e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012713)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 622
AatII GACGTC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 3 cut(s) 516, 571, 719
AciI CCGC 6 cut(s) 142, 435, 645, 665, 944, 1043
AclWI GGATC 4 cut(s) 72, 370, 800, 813
AcsI RAATTY 2 cut(s) 737, 1018
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 1 cut(s) 1217
AfiI CCNNNNNNNGG 3 cut(s) 516, 571, 719
AgsI TTSAA 3 cut(s) 37, 196, 766
AjnI CCWGG 2 cut(s) 107, 1099
AluBI AGCT 9 cut(s) 188, 278, 410, 621, 728, 973, 1002, 1052, 1112
AluI AGCT 9 cut(s) 188, 278, 410, 621, 728, 973, 1002, 1052, 1112
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 4 cut(s) 72, 370, 800, 813
AlwNI CAGNNNCTG 3 cut(s) 516, 1112, 1115
AoxI GGCC 2 cut(s) 519, 1332
ApoI RAATTY 2 cut(s) 737, 1018
AseI ATTAAT 2 cut(s) 369, 1161
AspS9I GGNCC 4 cut(s) 470, 519, 710, 911
AsuC2I CCSGG 2 cut(s) 291, 1361
AsuHPI GGTGA 4 cut(s) 532, 845, 866, 1089
AvaII GGWCC 3 cut(s) 470, 710, 911
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 13, 623
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 623
BccI CCATC 9 cut(s) 42, 162, 566, 713, 721, 772, 845, 1055, 1148
BceAI ACGGC 1 cut(s) 1319
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 109, 1101
BclI TGATCA 3 cut(s) 1132, 1237, 1294
BcnI CCSGG 2 cut(s) 291, 1361
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 3 cut(s) 279, 411, 948
BfmI CTRYAG 4 cut(s) 552, 729, 939, 1287
BfuAI ACCTGC 1 cut(s) 722
BlpI GCTNAGC 2 cut(s) 724, 1105
Bme1390I CCNGG 4 cut(s) 109, 291, 1101, 1361
Bme18I GGWCC 3 cut(s) 470, 710, 911
BmgT120I GGNCC 4 cut(s) 470, 519, 710, 911
BmiI GGNNCC 4 cut(s) 12, 106, 673, 807
BmrFI CCNGG 4 cut(s) 109, 291, 1101, 1361
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 2 cut(s) 724, 1105
BpuEI CTTGAG 2 cut(s) 201, 355
BpuMI CCSGG 2 cut(s) 291, 1361
BsaBI GATNNNNATC 2 cut(s) 1296, 1299
BsaHI GRCGYC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 1335
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 571, 719
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 4 cut(s) 326, 510, 817, 1076
Bse8I GATNNNNATC 2 cut(s) 1296, 1299
BseBI CCWGG 2 cut(s) 109, 1101
BseDI CCNNGG 1 cut(s) 1335
BseGI GGATG 2 cut(s) 84, 1072
BseJI GATNNNNATC 2 cut(s) 1296, 1299
BseLI CCNNNNNNNGG 3 cut(s) 516, 571, 719
BseMII CTCAG 4 cut(s) 155, 173, 738, 1119
BseNI ACTGG 4 cut(s) 326, 510, 817, 1076
BseRI GAGGAG 3 cut(s) 74, 204, 720
BseYI CCCAGC 1 cut(s) 516
BshFI GGCC 2 cut(s) 521, 1334
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 623
BsiSI CCGG 4 cut(s) 290, 675, 894, 1361
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 3 cut(s) 516, 571, 719
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 2 cut(s) 521, 1334
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 13, 623
Bsp143I GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
Bsp1720I GCTNAGC 2 cut(s) 724, 1105
BspACI CCGC 6 cut(s) 142, 435, 645, 665, 944, 1043
BspANI GGCC 2 cut(s) 521, 1334
BspCNI CTCAG 4 cut(s) 156, 174, 737, 1118
BspHI TCATGA 2 cut(s) 592, 952
BspLI GGNNCC 4 cut(s) 12, 106, 673, 807
BspMAI CTGCAG 3 cut(s) 733, 943, 1291
BspMI ACCTGC 1 cut(s) 722
BspPI GGATC 4 cut(s) 72, 370, 800, 813
BspT107I GGYRCC 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 4 cut(s) 326, 510, 817, 1076
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 1 cut(s) 1335
BssMI GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
BssNI GRCGYC 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 109, 1101
Bst4CI ACNGT 3 cut(s) 749, 1171, 1355
Bst6I CTCTTC 5 cut(s) 146, 191, 484, 490, 951
BstACI GRCGYC 1 cut(s) 783
BstAPI GCANNNNNTGC 2 cut(s) 662, 1115
BstC8I GCNNGC 3 cut(s) 246, 670, 1284
BstDEI CTNAG 4 cut(s) 164, 182, 724, 1105
BstDSI CCRYGG 1 cut(s) 1335
BstF5I GGATG 2 cut(s) 84, 1072
BstKTI GATC 9 cut(s) 67, 116, 378, 808, 979, 1135, 1240, 1297, 1328
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
BstNI CCWGG 2 cut(s) 109, 1101
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 4 cut(s) 107, 289, 1099, 1359
BstSFI CTRYAG 4 cut(s) 552, 729, 939, 1287
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 375, 805
BstYI RGATCY 2 cut(s) 375, 805
BsuRI GGCC 2 cut(s) 521, 1334
BtgI CCRYGG 1 cut(s) 1335
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 2 cut(s) 84, 1072
BtsIMutI CAGTG 1 cut(s) 1176
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 3 cut(s) 246, 670, 1284
CaiI CAGNNNCTG 3 cut(s) 516, 1112, 1115
CciI TCATGA 2 cut(s) 592, 952
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 470, 519, 710, 911
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 1216
CspCI CAANNNNNGTGG 2 cut(s) 1317, 1352
CviAII CATG 7 cut(s) 245, 523, 579, 593, 953, 1083, 1188
CviQI GTAC 1 cut(s) 1216
DdeI CTNAG 4 cut(s) 164, 182, 724, 1105
DpnI GATC 9 cut(s) 66, 115, 377, 807, 978, 1134, 1239, 1296, 1327
DpnII GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
Eam1104I CTCTTC 5 cut(s) 146, 191, 484, 490, 951
EarI CTCTTC 5 cut(s) 146, 191, 484, 490, 951
Ecl136II GAGCTC 1 cut(s) 621
Eco24I GRGCYC 2 cut(s) 13, 623
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 2 cut(s) 229, 1207
Eco47I GGWCC 3 cut(s) 470, 710, 911
Eco53kI GAGCTC 1 cut(s) 621
Eco57I CTGAAG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 107, 1099
EcoRV GATATC 2 cut(s) 229, 1207
EcoT38I GRGCYC 2 cut(s) 13, 623
FaeI CATG 7 cut(s) 248, 526, 582, 596, 956, 1086, 1191
FaqI GGGAC 1 cut(s) 893
FatI CATG 7 cut(s) 244, 522, 578, 592, 952, 1082, 1187
FauNDI CATATG 1 cut(s) 381
FbaI TGATCA 3 cut(s) 1132, 1237, 1294
FokI GGATG 2 cut(s) 71, 1079
FriOI GRGCYC 2 cut(s) 13, 623
FspBI CTAG 3 cut(s) 279, 411, 948
GsaI CCCAGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 521, 1334
HapII CCGG 4 cut(s) 290, 675, 894, 1361
HgaI GACGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 7 cut(s) 248, 526, 582, 596, 956, 1086, 1191
HinfI GANTC 2 cut(s) 337, 575
HpaII CCGG 4 cut(s) 290, 675, 894, 1361
HphI GGTGA 4 cut(s) 532, 845, 866, 1089
Hpy188I TCNGA 6 cut(s) 183, 704, 718, 805, 981, 1242
Hpy188III TCNNGA 7 cut(s) 218, 358, 593, 953, 1304, 1323, 1401
Hpy99I CGWCG 3 cut(s) 788, 851, 887
HpyAV CCTTC 4 cut(s) 34, 95, 396, 651
HpyCH4III ACNGT 3 cut(s) 749, 1171, 1355
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 7 cut(s) 131, 159, 244, 582, 731, 941, 1289
HpyF3I CTNAG 4 cut(s) 164, 182, 724, 1105
HpySE526I ACGT 1 cut(s) 783
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 7 cut(s) 248, 526, 582, 596, 956, 1086, 1191
Ksp22I TGATCA 3 cut(s) 1132, 1237, 1294
Kzo9I GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
LmnI GCTCC 3 cut(s) 16, 110, 1276
LweI GCATC 1 cut(s) 401
MaeI CTAG 3 cut(s) 279, 411, 948
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 3 cut(s) 135, 538, 1355
MalI GATC 9 cut(s) 66, 115, 377, 807, 978, 1134, 1239, 1296, 1327
MboI GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
MflI RGATCY 2 cut(s) 375, 805
MhlI GDGCHC 2 cut(s) 13, 623
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 682, 833
MseI TTAA 5 cut(s) 74, 369, 827, 998, 1161
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 4 cut(s) 728, 944, 1052, 1112
MspI CCGG 4 cut(s) 290, 675, 894, 1361
MspR9I CCNGG 4 cut(s) 109, 291, 1101, 1361
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 2 cut(s) 109, 1101
NciI CCSGG 2 cut(s) 291, 1361
NdeI CATATG 1 cut(s) 381
NdeII GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
NlaIII CATG 7 cut(s) 248, 526, 582, 596, 956, 1086, 1191
NlaIV GGNNCC 4 cut(s) 12, 106, 673, 807
NmuCI GTSAC 2 cut(s) 538, 1355
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PagI TCATGA 2 cut(s) 592, 952
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 575
PflMI CCANNNNNTGG 3 cut(s) 516, 571, 719
PfoI TCCNGGA 1 cut(s) 107
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PshBI ATTAAT 2 cut(s) 369, 1161
Psp124BI GAGCTC 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 107, 1099
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 2 cut(s) 107, 1099
PspN4I GGNNCC 4 cut(s) 12, 106, 673, 807
PspPI GGNCC 4 cut(s) 470, 519, 710, 911
PstI CTGCAG 3 cut(s) 733, 943, 1291
PstNI CAGNNNCTG 3 cut(s) 516, 1112, 1115
PsuI RGATCY 2 cut(s) 375, 805
PvuII CAGCTG 3 cut(s) 728, 1052, 1112
RsaI GTAC 1 cut(s) 1217
RsaNI GTAC 1 cut(s) 1216
RseI CAYNNNNRTG 1 cut(s) 591
SacI GAGCTC 1 cut(s) 623
SaqAI TTAA 5 cut(s) 74, 369, 827, 998, 1161
Sau3AI GATC 9 cut(s) 64, 113, 375, 805, 976, 1132, 1237, 1294, 1325
Sau96I GGNCC 4 cut(s) 470, 519, 710, 911
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 4 cut(s) 109, 291, 1101, 1361
SduI GDGCHC 2 cut(s) 13, 623
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 4 cut(s) 552, 729, 939, 1287
SinI GGWCC 3 cut(s) 470, 710, 911
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 2 cut(s) 216, 334
SmoI CTYRAG 2 cut(s) 216, 334
SphI GCATGC 1 cut(s) 248
SsiI CCGC 6 cut(s) 142, 435, 645, 665, 944, 1043
SspI AATATT 1 cut(s) 208
SspMI CTAG 3 cut(s) 279, 411, 948
SstI GAGCTC 1 cut(s) 623
StyD4I CCNGG 4 cut(s) 107, 289, 1099, 1359
TaaI ACNGT 3 cut(s) 749, 1171, 1355
TaiI ACGT 1 cut(s) 786
TaqI TCGA 4 cut(s) 340, 975, 1322, 1344
TauI GCSGC 2 cut(s) 668, 947
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 5 cut(s) 74, 369, 827, 998, 1161
Tru9I TTAA 5 cut(s) 74, 369, 827, 998, 1161
TscAI CASTG 1 cut(s) 1176
TseFI GTSAC 2 cut(s) 538, 1355
Tsp45I GTSAC 2 cut(s) 538, 1355
TspDTI ATGAA 8 cut(s) 459, 476, 539, 567, 807, 969, 1071, 1194
TspGWI ACGGA 2 cut(s) 77, 314
TspRI CASTG 1 cut(s) 1176
Van91I CCANNNNNTGG 3 cut(s) 516, 571, 719
VpaK11BI GGWCC 3 cut(s) 470, 710, 911
VspI ATTAAT 2 cut(s) 369, 1161
XapI RAATTY 2 cut(s) 737, 1018
XceI RCATGY 1 cut(s) 248
XspI CTAG 3 cut(s) 279, 411, 948
ZraI GACGTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.