Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Reverse (-)

1809955 .. 1812193

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGGAGGGCTCCGTGCTGCCAGAAAGTTGGGCTGAAGAAGGGGAGATGGACAGCAGAGGAGGATCAAACCTTAATCAACTACATCCATGCTAATGGGGAAGGCTCCTGGAGATCATTGCCCAAGAATGCAGGGTTACTGCGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATCTGAGAACTGACTTAAAGAGGGGAAATATTACTCCTCAAGAGGAAGATATCATCATCAAATTGCATGCTTCTCTGGGAAATAGGAGACCTCTTAATATGATGCATATGGCTACAGCAGCAGCAGCTAGTAGCAGTAGTGGCAGCAGCACCGCAGCAGATGTTCAAATGAATATGGCGATGAAATTAGGGCCTCCAACATCCAAGCGAAGAGGACGAGGCGGTAGAACCAGTCGCTGGGCCATGAAGAAGAACAAAATTTCGAACGCTTCTACTGCCATTAACCACCAGTTAGATTGTACTCATAAAGATGATGGATCGGCAACGGTGACAAGCTCGTCATCAATTAATATGTGTCCCCCTCCACCTCCTTCATCAGCAGCAGTTGCAGCTGGCATTGGACAAAAAGAAACACAAAATTTAGGCGGAGGAGGACCATCTGATTGCTCAGAAGGCAAAATTGATGGCGGTGGGGAGGTCGCTTTCAATGACTTGATGATGGACGCCGTCAACGAAACAATATTGGATCCAGCTGGGGCTCTGACTTTAAGTGGTGAAAGACAAAGCGATGATGATGATATCATGGGCGTTATTAGGGATGAGGATACCGGCACACTTTTAAATAAAGTGATGACTACTTGTACTGCAGCGGCAAGTCATGAGGAGGAGCATCAGCTCGATCAGATTAGTGCTACTAATTTGAGTTCATCATCACACTCAAATTCAAAATCAAGTTATGGAGATGCAGAAGCAGCTGCAATTGATGGGGAGGACTGGTATAATTCATGCTCTAATTACTCAGCAGGCTCAGCAGCTGCTACTTGTAATTTTGATAAGCAGAAGCAGCAGCTTGATGGAATGAATGGAACATTGGATGATGAAATGAGATGGAATTGGGAGAGTGATATCCATATGCACGACTACTTATGGAATATTGATCAGAAAGACGATGAGAATATACTCTCTTGGTTATGGGAGCATCAGGCTGCAGAGGATCATCATGACCATAACAATAAATCGAGATCAGAGGCCACGGTCGACGATGAACATGTCCCAGCTGACAAGCATAATGCTATTCTTGCTTGGCTTCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

425

Amino Acids

46.06

Weight (kDa)

5.3

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	7.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	1215
AciI	CCGC	6 cut(s)	142, 330, 399, 603, 645, 827
AclWI	GGATC	5 cut(s)	72, 502, 698, 711, 1179
AcsI	RAATTY	3 cut(s)	435, 595, 898
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	2 cut(s)	478, 820
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	1225
AgsI	TTSAA	3 cut(s)	344, 664, 903
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
AluBI	AGCT	9 cut(s)	305, 513, 569, 710, 853, 932, 992, 1027, 1235
AluI	AGCT	9 cut(s)	305, 513, 569, 710, 853, 932, 992, 1027, 1235
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	5 cut(s)	72, 502, 698, 711, 1179
AlwNI	CAGNNNCTG	2 cut(s)	414, 992
AoxI	GGCC	3 cut(s)	368, 417, 1206
ApoI	RAATTY	3 cut(s)	435, 595, 898
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	368, 417, 611
AsuHPI	GGTGA	2 cut(s)	517, 743
AsuII	TTCGAA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	703
BanII	GRGCYC	2 cut(s)	13, 718
BccI	CCATC	9 cut(s)	42, 162, 485, 622, 635, 670, 935, 1025, 1059
BceAI	ACGGC	1 cut(s)	668
BciT130I	CCWGG	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	1114
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	3 cut(s)	291, 822, 1164
BfuI	GTATCC	1 cut(s)	775
BlpI	GCTNAGC	1 cut(s)	985
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	368, 417, 611
BmiI	GGNNCC	3 cut(s)	12, 106, 705
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	4 cut(s)	270, 856, 910, 1165
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	985
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	1209
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	785
Bse1I	ACTGG	3 cut(s)	408, 466, 956
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	1209
BseGI	GGATG	4 cut(s)	84, 377, 781, 1057
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	5 cut(s)	155, 173, 639, 990, 999
BseNI	ACTGG	3 cut(s)	408, 466, 956
BseRI	GAGGAG	5 cut(s)	74, 204, 621, 854, 857
BseYI	CCCAGC	3 cut(s)	414, 710, 1231
Bsh1285I	CGRYCG	1 cut(s)	1215
BshFI	GGCC	3 cut(s)	370, 419, 1208
BsiEI	CGRYCG	1 cut(s)	1215
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	2 cut(s)	519, 1214
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	519, 1214
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	370, 419, 1208
Bso31I	GGTCTC	1 cut(s)	259
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	13, 718
Bsp143I	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
Bsp1720I	GCTNAGC	1 cut(s)	985
BspACI	CCGC	6 cut(s)	142, 330, 399, 603, 645, 827
BspANI	GGCC	3 cut(s)	370, 419, 1208
BspCNI	CTCAG	5 cut(s)	156, 174, 638, 989, 998
BspHI	TCATGA	3 cut(s)	835, 1177, 1271
BspLI	GGNNCC	3 cut(s)	12, 106, 705
BspMAI	CTGCAG	2 cut(s)	826, 1168
BspPI	GGATC	5 cut(s)	72, 502, 698, 711, 1179
BspT104I	TTCGAA	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	785
BsrI	ACTGG	3 cut(s)	408, 466, 956
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	1209
BssMI	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
BssNI	GRCGYC	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	505, 1213
Bst6I	CTCTTC	2 cut(s)	146, 382
BstACI	GRCGYC	1 cut(s)	681
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	246, 571, 982
BstDEI	CTNAG	5 cut(s)	164, 182, 625, 976, 985
BstDSI	CCRYGG	1 cut(s)	1209
BstF5I	GGATG	4 cut(s)	84, 377, 781, 1057
BstKTI	GATC	8 cut(s)	67, 116, 497, 706, 859, 1117, 1174, 1202
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
BstMCI	CGRYCG	1 cut(s)	1215
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	2 cut(s)	248, 1229
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	3 cut(s)	291, 822, 1164
BstX2I	RGATCY	1 cut(s)	703
BstXI	CCANNNNNNTGG	2 cut(s)	29, 95
BstYI	RGATCY	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	370, 419, 1208
BtgI	CCRYGG	1 cut(s)	1209
BtgZI	GCGATG	2 cut(s)	371, 759
BtsCI	GGATG	4 cut(s)	84, 377, 781, 1057
Cac8I	GCNNGC	3 cut(s)	246, 571, 982
CaiI	CAGNNNCTG	2 cut(s)	414, 992
CciI	TCATGA	3 cut(s)	835, 1177, 1271
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	3 cut(s)	368, 417, 611
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	477, 819
CviAII	CATG	9 cut(s)	89, 245, 421, 760, 836, 963, 1178, 1226, 1272
CviQI	GTAC	2 cut(s)	477, 819
DdeI	CTNAG	5 cut(s)	164, 182, 625, 976, 985
DpnI	GATC	8 cut(s)	66, 115, 496, 705, 858, 1116, 1173, 1201
DpnII	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
DraI	TTTAAA	1 cut(s)	798
DrdI	GACNNNNNNGTC	1 cut(s)	514
DseDI	GACNNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	146, 382
EarI	CTCTTC	2 cut(s)	146, 382
EciI	GGCGGA	1 cut(s)	618
Eco24I	GRGCYC	2 cut(s)	13, 718
Eco31I	GGTCTC	1 cut(s)	259
Eco32I	GATATC	3 cut(s)	229, 757, 1084
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	107
EcoRV	GATATC	3 cut(s)	229, 757, 1084
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	13, 718
FaeI	CATG	9 cut(s)	92, 248, 424, 763, 839, 966, 1181, 1229, 1275
FaqI	GGGAC	2 cut(s)	519, 1214
FatI	CATG	9 cut(s)	88, 244, 420, 759, 835, 962, 1177, 1225, 1271
FauNDI	CATATG	2 cut(s)	285, 1089
FbaI	TGATCA	1 cut(s)	1114
FblI	GTMKAC	1 cut(s)	1215
FokI	GGATG	4 cut(s)	71, 364, 788, 1064
FriOI	GRGCYC	2 cut(s)	13, 718
FspBI	CTAG	1 cut(s)	306
GsaI	CCCAGC	3 cut(s)	418, 714, 1235
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	370, 419, 1208
HapII	CCGG	1 cut(s)	786
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	9 cut(s)	92, 248, 424, 763, 839, 966, 1181, 1229, 1275
HincII	GTYRAC	2 cut(s)	688, 1216
HindII	GTYRAC	2 cut(s)	688, 1216
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	2 cut(s)	517, 743
Hpy166II	GTNNAC	2 cut(s)	688, 1216
Hpy188I	TCNGA	7 cut(s)	183, 619, 628, 720, 861, 1119, 1204
Hpy188III	TCNNGA	5 cut(s)	218, 836, 1178, 1197, 1272
Hpy8I	GTNNAC	2 cut(s)	688, 1216
Hpy99I	CGWCG	1 cut(s)	1220
HpyAV	CCTTC	4 cut(s)	34, 95, 558, 623
HpyCH4III	ACNGT	2 cut(s)	505, 1213
HpyF3I	CTNAG	5 cut(s)	164, 182, 625, 976, 985
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	9 cut(s)	92, 248, 424, 763, 839, 966, 1181, 1229, 1275
Ksp22I	TGATCA	1 cut(s)	1114
Kzo9I	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
LmnI	GCTCC	4 cut(s)	16, 110, 844, 1153
LweI	GCATC	4 cut(s)	270, 856, 910, 1165
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	135, 505
MalI	GATC	8 cut(s)	66, 115, 496, 705, 858, 1116, 1173, 1201
MboI	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
MboII	GAAGA	6 cut(s)	49, 163, 236, 399, 436, 439
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	13, 718
MmeI	TCCRAC	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	7 cut(s)	74, 194, 273, 459, 525, 725, 797
MslI	CAYNNNNRTG	2 cut(s)	93, 486
MspA1I	CMGCKG	6 cut(s)	569, 710, 827, 932, 992, 1235
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	109
NdeI	CATATG	2 cut(s)	285, 1089
NdeII	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
NlaIII	CATG	9 cut(s)	92, 248, 424, 763, 839, 966, 1181, 1229, 1275
NlaIV	GGNNCC	3 cut(s)	12, 106, 705
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	2 cut(s)	248, 1229
NspV	TTCGAA	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	3 cut(s)	835, 1177, 1271
PciI	ACATGT	1 cut(s)	1225
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PctI	GAATGC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	414
PfoI	TCCNGGA	1 cut(s)	107
PscI	ACATGT	1 cut(s)	1225
PshBI	ATTAAT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	3 cut(s)	414, 710, 1231
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	12, 106, 705
PspPI	GGNCC	3 cut(s)	368, 417, 611
PstI	CTGCAG	2 cut(s)	826, 1168
PstNI	CAGNNNCTG	2 cut(s)	414, 992
PsuI	RGATCY	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	5 cut(s)	569, 710, 932, 992, 1235
RsaI	GTAC	2 cut(s)	478, 820
RsaNI	GTAC	2 cut(s)	477, 819
RseI	CAYNNNNRTG	2 cut(s)	93, 486
SalI	GTCGAC	1 cut(s)	1214
SaqAI	TTAA	7 cut(s)	74, 194, 273, 459, 525, 725, 797
Sau3AI	GATC	8 cut(s)	64, 113, 494, 703, 856, 1114, 1171, 1199
Sau96I	GGNCC	3 cut(s)	368, 417, 611
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	13, 718
SfaNI	GCATC	4 cut(s)	270, 856, 910, 1165
SfcI	CTRYAG	3 cut(s)	291, 822, 1164
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	2 cut(s)	93, 486
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	248
SsiI	CCGC	6 cut(s)	142, 330, 399, 603, 645, 827
SspI	AATATT	3 cut(s)	208, 699, 1111
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	505, 1213
TaqI	TCGA	4 cut(s)	440, 855, 1196, 1215
TatI	WGTACW	2 cut(s)	476, 818
TauI	GCSGC	1 cut(s)	830
Tru1I	TTAA	7 cut(s)	74, 194, 273, 459, 525, 725, 797
Tru9I	TTAA	7 cut(s)	74, 194, 273, 459, 525, 725, 797
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	9 cut(s)	362, 374, 437, 540, 873, 951, 1052, 1071, 1236
Tth111I	GACNNNGTC	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	611
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	3 cut(s)	435, 595, 898
XceI	RCATGY	2 cut(s)	248, 1229
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.