Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012713

Physical Location & Seq

Genomic Coordinates Forward (+)

23154630 .. 23156585

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGAAGGGCGCCGTGCTGTGAGAAGGTAGGAATTAAGAAGGGGCGCTGGACGGCGGAGGAAGACCGGACTCTCTCCGACTACATTCAGTCCAACGGCGAAGGATCATGGCGTTCTCTTCCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATTTGAGATCAGACATCAAGAGAGGAAACATAACTCCCGAAGAAGAGGACGTCATTGTTAAACTGCATTCCACTTTGGGAACCAGGTGGTCAACAATTGCGAGCAATCTACCGGGAAGAACAGACAACGAAATAAAAAACTATTGGAATTCTCATCTCAGCCGTAAACTCCACGGTTACTTCAGAAAACCAACTGTCGCCAATACCGTCGAGAATGCGCCTCCGCCTCCTAAGCGTAGACCTGGAAGAACCAGCAGATCCGCCATGAAACCCAAATTTATCCTAAACCCTAAAAACCACAAAACCCCTAATTCTTTTAAAGCAAACAAAAGTGACATCGTTTTGCCAACTACGACAATAGAGAATGGAGAGGGAGACAAAGAAGACGCATTAATGGTGTTGTCAAGTAGTAGCTTAAGTGGAGCAGAGGAACCCGGTTTAGGACCATGTGGTTATGGAGACGATGGCGATTGTAACCCAAGCATTAATGGCGACGATGGAGCTTTGTGTCTCAATGACGACATTTTCGATTCTTGTTTTCTATTGGACGACTCTCATGCTGTCCACGTGTCCTCATGTGAGTCGAACAACGTAAAAAACTCTGAGCCATATGGAGGGATGTCAGTTGGGCACAAAAATATCGAAACGATGGCTGATGATTTCGTTGACTGGGACTTTGTATGGAGAGAAGGTCAAACCCTTTGGGACGAAAAAGAGGATCTTGATTCGGTTTTGTCGAGGCTGTTAGATGGAGAGGAAATGGAATCTGAGATCAGACAAAGGGACTCCAACGACTTTGGAGAACCGTTGGATATTGACGAAGAAAACAAGATGGCTGCTTGGCTTTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

343

Amino Acids

38.31

Weight (kDa)

5.14

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.2e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47460 AT3G62610
fragaria_vesca	FvH4_5g39550
malus_domestica	MD03G1297100.v1.1 MD11G1316800.v1.1
pyrus_communis	pycom03g23560 pycom11g27640
rosa_chinensis	RchiOBHm_Chr7g0241861
rosa_laevigata	RLG00000000537
rosa_multiflora	Rmu_sc0001865.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218590
rosa_rugosa	Rorug07G0348100
rosa_samantha	Rh2AG073100 Rh7AG502300 Rh7BG473600 Rh7CG518700 Rh7DG487700
rosa_wichuraiana	Rw7G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	3 cut(s)	56, 401, 438
AclWI	GGATC	3 cut(s)	112, 429, 903
AcsI	RAATTY	2 cut(s)	325, 452
AcuI	CTGAAG	1 cut(s)	343
AcvI	CACGTG	1 cut(s)	745
AcyI	GRCGYC	2 cut(s)	11, 228
AfiI	CCNNNNNNNGG	2 cut(s)	617, 791
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	1 cut(s)	744
AjnI	CCWGG	2 cut(s)	260, 418
AluBI	AGCT	3 cut(s)	156, 591, 680
AluI	AGCT	3 cut(s)	156, 591, 680
Alw26I	GTCTC	3 cut(s)	546, 630, 692
AlwI	GGATC	3 cut(s)	112, 429, 903
ApeKI	GCWGC	1 cut(s)	1013
ApoI	RAATTY	2 cut(s)	325, 452
ArsI	GACNNNNNNTTYG	4 cut(s)	686, 718, 836, 868
AseI	ATTAAT	2 cut(s)	569, 663
AspLEI	GCGC	3 cut(s)	13, 48, 397
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	3 cut(s)	133, 291, 612
AvaII	GGWCC	1 cut(s)	620
BaeGI	GKGCMC	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	745
BbsI	GAAGAC	2 cut(s)	69, 567
BbvI	GCAGC	1 cut(s)	1000
BccI	CCATC	6 cut(s)	162, 635, 668, 820, 920, 1003
BceAI	ACGGC	3 cut(s)	69, 112, 324
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	2 cut(s)	262, 420
BcnI	CCSGG	3 cut(s)	133, 291, 612
BcoDI	GTCTC	3 cut(s)	546, 630, 692
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	2 cut(s)	14, 49
BfrI	CTTAAG	1 cut(s)	592
BisI	GCNGC	1 cut(s)	1014
BlsI	GCNGC	1 cut(s)	1015
Bme1390I	CCNGG	5 cut(s)	133, 262, 291, 420, 612
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	12, 259, 609
BmrFI	CCNGG	5 cut(s)	133, 262, 291, 420, 612
BmrI	ACTGGG	1 cut(s)	856
BmuI	ACTGGG	1 cut(s)	856
BpiI	GAAGAC	2 cut(s)	69, 567
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	3 cut(s)	133, 291, 612
BsaAI	YACGTR	1 cut(s)	745
BsaHI	GRCGYC	2 cut(s)	11, 228
BsaJI	CCNNGG	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 791
Bse1I	ACTGG	1 cut(s)	851
BseBI	CCWGG	2 cut(s)	262, 420
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	2 cut(s)	617, 791
BseMII	CTCAG	3 cut(s)	349, 771, 936
BseNI	ACTGG	1 cut(s)	851
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	1 cut(s)	1000
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	4 cut(s)	67, 132, 290, 612
BslFI	GGGAC	3 cut(s)	863, 896, 974
BslI	CCNNNNNNNGG	2 cut(s)	617, 791
BsmAI	GTCTC	3 cut(s)	546, 630, 692
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	3 cut(s)	863, 896, 974
BsmI	GAATGC	2 cut(s)	244, 397
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	5 cut(s)	104, 185, 434, 895, 948
BspACI	CCGC	3 cut(s)	56, 401, 438
BspCNI	CTCAG	3 cut(s)	348, 772, 937
BspLI	GGNNCC	3 cut(s)	12, 259, 609
BspPI	GGATC	3 cut(s)	112, 429, 903
BspT107I	GGYRCC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	5 cut(s)	104, 185, 434, 895, 948
BssNI	GRCGYC	2 cut(s)	11, 228
Bst2UI	CCWGG	2 cut(s)	262, 420
Bst4CI	ACNGT	4 cut(s)	353, 373, 385, 984
Bst6I	CTCTTC	2 cut(s)	123, 216
BstACI	GRCGYC	2 cut(s)	11, 228
BstAFI	CTTAAG	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	745
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	4 cut(s)	335, 408, 780, 945
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	801
BstH2I	RGCGCY	2 cut(s)	14, 49
BstHHI	GCGC	3 cut(s)	13, 48, 397
BstKTI	GATC	5 cut(s)	107, 188, 437, 898, 951
BstMAI	GTCTC	3 cut(s)	546, 630, 692
BstMBI	GATC	5 cut(s)	104, 185, 434, 895, 948
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 666
BstNI	CCWGG	2 cut(s)	262, 420
BstSCI	CCNGG	5 cut(s)	131, 260, 289, 418, 610
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	810
BstV1I	GCAGC	1 cut(s)	1000
BstV2I	GAAGAC	2 cut(s)	69, 567
BstX2I	RGATCY	2 cut(s)	434, 895
BstYI	RGATCY	2 cut(s)	434, 895
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	801
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	3 cut(s)	13, 48, 397
Cfr13I	GGNCC	1 cut(s)	620
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	260
CviAII	CATG	5 cut(s)	108, 442, 624, 734, 753
DdeI	CTNAG	4 cut(s)	335, 408, 780, 945
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	5 cut(s)	106, 187, 436, 897, 950
DpnII	GATC	5 cut(s)	104, 185, 434, 895, 948
DraI	TTTAAA	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	123, 216
EarI	CTCTTC	2 cut(s)	123, 216
EciI	GGCGGA	3 cut(s)	71, 390, 427
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	343
Eco72I	CACGTG	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	260, 418
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	5 cut(s)	111, 445, 627, 737, 756
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FaqI	GGGAC	3 cut(s)	863, 896, 974
FatI	CATG	5 cut(s)	107, 441, 623, 733, 752
FauNDI	CATATG	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	1014
FokI	GGATG	1 cut(s)	808
Fsp4HI	GCNGC	1 cut(s)	1014
GlaI	GCGC	3 cut(s)	12, 47, 396
GluI	GCNGC	1 cut(s)	1014
HaeII	RGCGCY	2 cut(s)	14, 49
HapII	CCGG	4 cut(s)	67, 132, 290, 612
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	3 cut(s)	13, 48, 397
Hin1I	GRCGYC	2 cut(s)	11, 228
Hin1II	CATG	5 cut(s)	111, 445, 627, 737, 756
Hin6I	GCGC	3 cut(s)	11, 46, 395
HinP1I	GCGC	3 cut(s)	11, 46, 395
HincII	GTYRAC	2 cut(s)	270, 844
HindII	GTYRAC	2 cut(s)	270, 844
HinfI	GANTC	7 cut(s)	70, 707, 728, 758, 902, 941, 962
HpaII	CCGG	4 cut(s)	67, 132, 290, 612
Hpy166II	GTNNAC	5 cut(s)	270, 344, 416, 742, 844
Hpy188I	TCNGA	6 cut(s)	79, 190, 362, 781, 946, 953
Hpy188III	TCNNGA	5 cut(s)	196, 215, 388, 899, 1029
Hpy8I	GTNNAC	5 cut(s)	270, 344, 416, 742, 844
Hpy99I	CGWCG	2 cut(s)	389, 674
HpyAV	CCTTC	4 cut(s)	19, 34, 95, 860
HpyCH4III	ACNGT	4 cut(s)	353, 373, 385, 984
HpyCH4IV	ACGT	3 cut(s)	228, 744, 768
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 666
HpyF3I	CTNAG	4 cut(s)	335, 408, 780, 945
HpySE526I	ACGT	3 cut(s)	228, 744, 768
Hsp92I	GRCGYC	2 cut(s)	11, 228
Hsp92II	CATG	5 cut(s)	111, 445, 627, 737, 756
HspAI	GCGC	3 cut(s)	11, 46, 395
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	104, 185, 434, 895, 948
LmnI	GCTCC	2 cut(s)	599, 677
Lsp1109I	GCAGC	1 cut(s)	1000
MabI	ACCWGGT	1 cut(s)	260
MaeII	ACGT	3 cut(s)	228, 744, 768
MaeIII	GTNAC	3 cut(s)	353, 509, 650
MalI	GATC	5 cut(s)	106, 187, 436, 897, 950
MboI	GATC	5 cut(s)	104, 185, 434, 895, 948
MboII	GAAGA	8 cut(s)	74, 110, 230, 233, 306, 435, 572, 1010
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	434, 895
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	5 cut(s)	33, 273, 325, 452, 487
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	4 cut(s)	64, 722, 767, 956
MmeI	TCCRAC	4 cut(s)	102, 117, 966, 990
MseI	TTAA	6 cut(s)	36, 237, 495, 569, 593, 663
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	4 cut(s)	67, 132, 290, 612
MspR9I	CCNGG	5 cut(s)	133, 262, 291, 420, 612
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	2 cut(s)	244, 397
MvaI	CCWGG	2 cut(s)	262, 420
MwoI	GCNNNNNNNGC	2 cut(s)	409, 666
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	3 cut(s)	133, 291, 612
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	5 cut(s)	104, 185, 434, 895, 948
NlaIII	CATG	5 cut(s)	111, 445, 627, 737, 756
NlaIV	GGNNCC	3 cut(s)	12, 259, 609
NmuCI	GTSAC	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 702, 911
PctI	GAATGC	2 cut(s)	244, 397
PfeI	GAWTC	3 cut(s)	707, 902, 941
PkrI	GCNGC	1 cut(s)	1015
PleI	GAGTC	4 cut(s)	64, 722, 766, 956
PluTI	GGCGCC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	745
PmlI	CACGTG	1 cut(s)	745
PpsI	GAGTC	4 cut(s)	64, 722, 766, 956
Ppu21I	YACGTR	1 cut(s)	745
PshBI	ATTAAT	2 cut(s)	569, 663
Psp6I	CCWGG	2 cut(s)	260, 418
PspCI	CACGTG	1 cut(s)	745
PspGI	CCWGG	2 cut(s)	260, 418
PspN4I	GGNNCC	3 cut(s)	12, 259, 609
PspPI	GGNCC	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	434, 895
SaqAI	TTAA	6 cut(s)	36, 237, 495, 569, 593, 663
SatI	GCNGC	1 cut(s)	1014
Sau3AI	GATC	5 cut(s)	104, 185, 434, 895, 948
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	4 cut(s)	64, 722, 767, 956
ScrFI	CCNGG	5 cut(s)	133, 262, 291, 420, 612
SduI	GDGCHC	1 cut(s)	810
SexAI	ACCWGGT	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	157
SfoI	GGCGCC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	5 cut(s)	33, 273, 325, 452, 487
SsiI	CCGC	3 cut(s)	56, 401, 438
SspDI	GGCGCC	1 cut(s)	10
StyD4I	CCNGG	5 cut(s)	131, 260, 289, 418, 610
TaaI	ACNGT	4 cut(s)	353, 373, 385, 984
TaiI	ACGT	3 cut(s)	231, 747, 771
TaqI	TCGA	5 cut(s)	387, 705, 761, 819, 914
TasI	AATT	5 cut(s)	33, 273, 325, 452, 487
TfiI	GAWTC	3 cut(s)	707, 902, 941
Tru1I	TTAA	6 cut(s)	36, 237, 495, 569, 593, 663
Tru9I	TTAA	6 cut(s)	36, 237, 495, 569, 593, 663
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	1013
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	620
VspI	ATTAAT	2 cut(s)	569, 663
XapI	RAATTY	2 cut(s)	325, 452
XmiI	GTMKAC	1 cut(s)	415
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.