AT2G47485

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007809
Physical Location & Seq
Forward (+)
19485809 .. 19486833
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47485.1

Sequence Viewer

Length: 426 bp
ATGGAGATAAGGTATTGGCGGAGGTTAAGAGGATACCAAAGGCTAGATGGTTCTGCCAAGAAGGCGAGCTCGGGCCGGAGAAATGTAAAGCGGGTCAAAATGGATCCCACACGGAAGAGACGGTTTTGGAGGATCAAGATAGTGCCGAAGCTAAGGATCTTGAAAAAGGCGTCGCCTAAGAAGCTTTTAACGTGGCTTCGAGATGCTTACGTCAACATGATGCTGCGCCTAGCGAATTCTCGGGTCGTCGGATCATCGTACGGGTACGGCGAATATGGGTACGGGTCGGGTTTGGCGTCGAAGGAGTATGACGAGAAGAAGCTGGTGGAGATTTACAAATCGATATTGATGGCTCAGGGGAATCTCGTGCACCGTGACGTACCTAAACTGTCCTCAAATTCGATTTTACTCTCACCCATTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.48

Weight (kDa)

10.84

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 91
AclWI GGATC 5 cut(s) 98, 111, 140, 164, 259
AcsI RAATTY 2 cut(s) 235, 397
AcyI GRCGYC 2 cut(s) 170, 296
AfaI GTAC 4 cut(s) 260, 266, 281, 381
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 4 cut(s) 69, 151, 184, 322
AluI AGCT 4 cut(s) 69, 151, 184, 322
Alw21I GWGCWC 2 cut(s) 71, 372
Alw26I GTCTC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 5 cut(s) 98, 111, 140, 164, 259
Ama87I CYCGRG 2 cut(s) 70, 240
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 235, 397
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 405
AvaI CYCGRG 2 cut(s) 70, 240
BaeGI GKGCMC 1 cut(s) 372
BamHI GGATCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 71, 372
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 41, 343
BceAI ACGGC 1 cut(s) 283
BciVI GTATCC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 44, 230
BfuI GTATCC 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmeT110I CYCGRG 2 cut(s) 70, 240
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 2 cut(s) 193, 210
Bpu10I CCTNAGC 2 cut(s) 152, 354
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 2 cut(s) 170, 296
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 341
BseMII CTCAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 71, 372
BsiHKCI CYCGRG 2 cut(s) 70, 240
BsiSI CCGG 1 cut(s) 76
BsiWI CGTACG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 2 cut(s) 70, 240
Bsp1286I GDGCHC 2 cut(s) 71, 372
Bsp143I GATC 4 cut(s) 103, 132, 156, 251
BspACI CCGC 2 cut(s) 19, 91
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 367
BspDI ATCGAT 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 5 cut(s) 98, 111, 140, 164, 259
BssMI GATC 4 cut(s) 103, 132, 156, 251
BssNI GRCGYC 2 cut(s) 170, 296
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 123, 374, 390
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 2 cut(s) 170, 296
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 152, 177, 354
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 106, 135, 159, 254
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 4 cut(s) 103, 132, 156, 251
BstMWI GCNNNNNNNGC 2 cut(s) 62, 181
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 103, 156
BstYI RGATCY 2 cut(s) 103, 156
Bsu15I ATCGAT 1 cut(s) 341
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 75
BsuTUI ATCGAT 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 2 cut(s) 159, 285
Csp6I GTAC 4 cut(s) 259, 265, 280, 380
CviAII CATG 1 cut(s) 217
CviJI RGCY 8 cut(s) 43, 69, 75, 151, 184, 196, 322, 353
CviKI_1 RGCY 8 cut(s) 43, 69, 75, 151, 184, 196, 322, 353
CviQI GTAC 4 cut(s) 259, 265, 280, 380
DdeI CTNAG 3 cut(s) 152, 177, 354
DpnI GATC 4 cut(s) 105, 134, 158, 253
DpnII GATC 4 cut(s) 103, 132, 156, 251
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco88I CYCGRG 2 cut(s) 70, 240
EcoICRI GAGCTC 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 218, 276, 309
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 44, 230
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 76
HgaI GACGC 2 cut(s) 159, 285
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 170, 296
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 405
Hpy166II GTNNAC 2 cut(s) 214, 370
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 3 cut(s) 136, 160, 200
Hpy8I GTNNAC 2 cut(s) 214, 370
Hpy99I CGWCG 3 cut(s) 175, 251, 301
HpyAV CCTTC 2 cut(s) 55, 295
HpyCH4III ACNGT 3 cut(s) 123, 374, 390
HpyCH4IV ACGT 3 cut(s) 191, 210, 378
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 181
HpyF3I CTNAG 3 cut(s) 152, 177, 354
HpySE526I ACGT 3 cut(s) 191, 210, 378
Hsp92I GRCGYC 2 cut(s) 170, 296
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 103, 132, 156, 251
LpnPI CCDG 3 cut(s) 89, 308, 341
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 2 cut(s) 193, 210
MaeI CTAG 2 cut(s) 44, 230
MaeII ACGT 3 cut(s) 191, 210, 378
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 105, 134, 158, 253
MboI GATC 4 cut(s) 103, 132, 156, 251
MboII GAAGA 2 cut(s) 127, 328
MflI RGATCY 2 cut(s) 103, 156
MhlI GDGCHC 2 cut(s) 71, 372
MluCI AATT 2 cut(s) 235, 397
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 4 cut(s) 15, 23, 123, 403
MseI TTAA 2 cut(s) 26, 188
MspI CCGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 62, 181
NdeII GATC 4 cut(s) 103, 132, 156, 251
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 293
PfeI GAWTC 1 cut(s) 361
Pfl23II CGTACG 1 cut(s) 258
PkrI GCNGC 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 71
PspLI CGTACG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 103, 156
RsaI GTAC 4 cut(s) 260, 266, 281, 381
RsaNI GTAC 4 cut(s) 259, 265, 280, 380
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 26, 188
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 4 cut(s) 103, 132, 156, 251
Sau96I GGNCC 1 cut(s) 73
SduI GDGCHC 2 cut(s) 71, 372
SfaNI GCATC 2 cut(s) 193, 210
Sse9I AATT 2 cut(s) 235, 397
SsiI CCGC 2 cut(s) 19, 91
SspMI CTAG 2 cut(s) 44, 230
SstI GAGCTC 1 cut(s) 71
TaaI ACNGT 3 cut(s) 123, 374, 390
TaiI ACGT 3 cut(s) 194, 213, 381
TaqI TCGA 4 cut(s) 199, 299, 341, 401
TasI AATT 2 cut(s) 235, 397
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 2 cut(s) 26, 188
Tru9I TTAA 2 cut(s) 26, 188
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 127
VneI GTGCAC 1 cut(s) 368
XapI RAATTY 2 cut(s) 235, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XspI CTAG 2 cut(s) 44, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.