Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003559.1

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

30598 .. 31038

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003559.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggaaggggtctctacaagcatgtacaaaggtctgagaggatactggcgaaggagaggctacaaaaagctaagtgggtcgggccgacgccacaagaaccggatggagctgccttcaccccgtaaaaggcgcgtgtggcggatcaaaatggctcccaagttgaagctgagttgcctcagaagaatcccttcacccaagaagtttttggtttggcttcgagacgcctatgtcaaactcatgctgagattcgccaactcgcgggtgttcactaccgcctacggtggttccgtatgtcatggcactactggttcattcggaaaaggcccccttaaggagtatgatgagaagatgatcatcgagatctacaagatgctggcgccaggtcagttggtgccccgcgacgcacctaaactaggctcagaaattgtttaccgccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.95

Weight (kDa)

10.83

Isoelectric Point (pI)

67.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	376, 391
AccII	CGCG	3 cut(s)	132, 259, 399
AciI	CCGC	5 cut(s)	139, 259, 273, 397, 433
AclWI	GGATC	1 cut(s)	149
AcyI	GRCGYC	3 cut(s)	88, 222, 377
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	4 cut(s)	126, 258, 331, 413
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	70, 109, 166
AluI	AGCT	3 cut(s)	70, 109, 166
Alw26I	GTCTC	2 cut(s)	16, 213
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	82, 322
ApeKI	GCWGC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	132, 379
AspS9I	GGNCC	2 cut(s)	82, 323
AsuHPI	GGTGA	2 cut(s)	108, 183
BaeGI	GKGCMC	1 cut(s)	396
BanI	GGYRCC	2 cut(s)	376, 391
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	16, 213
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	380
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	82, 323
BmiI	GGNNCC	5 cut(s)	153, 286, 325, 378, 393
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	3 cut(s)	88, 222, 377
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 258, 331, 413
Bse1I	ACTGG	3 cut(s)	50, 310, 436
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	126, 258, 331, 413
BseMII	CTCAG	5 cut(s)	26, 158, 190, 233, 432
BseNI	ACTGG	3 cut(s)	50, 310, 436
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	3 cut(s)	132, 259, 399
BshFI	GGCC	2 cut(s)	84, 324
BshNI	GGYRCC	2 cut(s)	376, 391
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	126, 258, 331, 413
BsmAI	GTCTC	2 cut(s)	16, 213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	84, 324
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	141, 351, 360
BspACI	CCGC	5 cut(s)	139, 259, 273, 397, 433
BspANI	GGCC	2 cut(s)	84, 324
BspCNI	CTCAG	5 cut(s)	27, 159, 189, 234, 431
BspFNI	CGCG	3 cut(s)	132, 259, 399
BspLI	GGNNCC	5 cut(s)	153, 286, 325, 378, 393
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	376, 391
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	50, 310, 436
BssMI	GATC	3 cut(s)	141, 351, 360
BssNI	GRCGYC	3 cut(s)	88, 222, 377
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	3 cut(s)	88, 222, 377
BstAFI	CTTAAG	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 418
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	3 cut(s)	132, 259, 399
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	132, 379
BstKTI	GATC	3 cut(s)	144, 354, 363
BstMAI	GTCTC	2 cut(s)	16, 213
BstMBI	GATC	3 cut(s)	141, 351, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	396
BstUI	CGCG	3 cut(s)	132, 259, 399
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	84, 324
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	2 cut(s)	132, 379
Cfr13I	GGNCC	2 cut(s)	82, 323
CseI	GACGC	3 cut(s)	96, 230, 410
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	22, 238, 296
CviJI	RGCY	9 cut(s)	60, 70, 84, 109, 152, 166, 214, 324, 417
CviKI_1	RGCY	9 cut(s)	60, 70, 84, 109, 152, 166, 214, 324, 417
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 418
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	3 cut(s)	143, 353, 362
DpnII	GATC	3 cut(s)	141, 351, 360
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	379
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	25, 241, 299
FaiI	YATR	6 cut(s)	23, 228, 239, 292, 297, 339
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 312, 344
FatI	CATG	3 cut(s)	21, 237, 295
FauI	CCCGC	2 cut(s)	252, 404
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	2 cut(s)	131, 378
GluI	GCNGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	84, 324
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	3 cut(s)	96, 230, 410
HhaI	GCGC	2 cut(s)	132, 379
Hin1I	GRCGYC	3 cut(s)	88, 222, 377
Hin1II	CATG	3 cut(s)	25, 241, 299
Hin6I	GCGC	2 cut(s)	130, 377
HinP1I	GCGC	2 cut(s)	130, 377
HinfI	GANTC	2 cut(s)	183, 246
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	108, 183
Hpy166II	GTNNAC	2 cut(s)	267, 430
Hpy188I	TCNGA	4 cut(s)	36, 179, 317, 421
Hpy188III	TCNNGA	2 cut(s)	218, 358
Hpy8I	GTNNAC	2 cut(s)	267, 430
Hpy99I	CGWCG	2 cut(s)	90, 404
HpyAV	CCTTC	3 cut(s)	45, 123, 198
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 418
Hsp92I	GRCGYC	3 cut(s)	88, 222, 377
Hsp92II	CATG	3 cut(s)	25, 241, 299
HspAI	GCGC	2 cut(s)	130, 377
KasI	GGCGCC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	141, 351, 360
LmnI	GCTCC	2 cut(s)	106, 157
LpnPI	CCDG	6 cut(s)	31, 113, 291, 359, 366, 393
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	413
MalI	GATC	3 cut(s)	143, 353, 362
MboI	GATC	3 cut(s)	141, 351, 360
MboII	GAAGA	2 cut(s)	192, 358
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	32, 50, 185
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	3 cut(s)	132, 259, 399
MwoI	GCNNNNNNNGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	377
NdeII	GATC	3 cut(s)	141, 351, 360
NlaIII	CATG	3 cut(s)	25, 241, 299
NlaIV	GGNNCC	5 cut(s)	153, 286, 325, 378, 393
NspI	RCATGY	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	183, 246
PkrI	GCNGC	1 cut(s)	111
PluTI	GGCGCC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	5 cut(s)	153, 286, 325, 378, 393
PspPI	GGNCC	2 cut(s)	82, 323
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	141, 351, 360
Sau96I	GGNCC	2 cut(s)	82, 323
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	6 cut(s)	34, 72, 111, 168, 385, 409
SfaNI	GCATC	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	5 cut(s)	139, 259, 273, 397, 433
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	217, 357
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	183, 246
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	411
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.