Prupe.8G268600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007809
Physical Location & Seq
Reverse (-)
22378630 .. 22379739
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G268600.1

Sequence Viewer

Length: 441 bp
ATGGAAGGTGTCTCTACAAGCATGTACAAAGGGTTGAGAGGCTACTGGCGGAGGAGAGGCTACGAGAAGCTAAGTGGGTCGGGTCGACTGACGGAGCTGCGTTCGGGCAGCAAAAGGCGTGCTCGGCGGATCCGAATCAAAATCAAAATGGGTCGGAAGCTGAAGCTGAGCTTCCTCAGCATCAGAAGAATGCCTTCGCCCAAGAAGTTGTTGGTTTGGCTCCGGGACGCCTATGTCAAACTGATGCTGGGATTCGCTAACTCGGGGATGTTTAGTACCGGCTACGGTGGGCCCATGTGCGACTACGGCACCGGTTCCTTCGGGAAGGGCCCACTTAAGGAGTATGATGAGAAGATGATTGTCGAGATCTACAAGTCCCTGATGCTGGCGCAAGGCCGCGACGCAGCCAAGTTTGGCTCAGAAATCGTTAGCCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.65

Weight (kDa)

10.7

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 85
AccII CGCG 1 cut(s) 399
AciI CCGC 3 cut(s) 49, 127, 397
AclWI GGATC 2 cut(s) 124, 137
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 26, 277
AfiI CCNNNNNNNGG 2 cut(s) 337, 385
AflII CTTAAG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 311
AluBI AGCT 5 cut(s) 70, 97, 160, 166, 171
AluI AGCT 5 cut(s) 70, 97, 160, 166, 171
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 2 cut(s) 124, 137
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 3 cut(s) 290, 328, 394
ApaI GGGCCC 2 cut(s) 294, 332
ApeKI GCWGC 3 cut(s) 97, 108, 404
AsiGI ACCGGT 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 4 cut(s) 290, 291, 328, 329
AsuC2I CCSGG 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 262
BaeGI GKGCMC 2 cut(s) 294, 332
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 294, 332
Bbv12I GWGCWC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 84, 120, 416
BceAI ACGGC 1 cut(s) 322
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 335
BglII AGATCT 1 cut(s) 366
BisI GCNGC 4 cut(s) 98, 109, 397, 405
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 4 cut(s) 99, 110, 398, 406
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 4 cut(s) 290, 291, 328, 329
BmiI GGNNCC 6 cut(s) 131, 221, 292, 310, 316, 330
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 3 cut(s) 189, 234, 372
Bpu10I CCTNAGC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 385
Bse118I RCCGGY 2 cut(s) 278, 311
Bse1I ACTGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 134
BseGI GGATG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 337, 385
BseMII CTCAG 3 cut(s) 158, 190, 432
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 2 cut(s) 294, 332
BseXI GCAGC 3 cut(s) 84, 120, 416
BseYI CCCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 292, 330, 396
BshNI GGYRCC 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 3 cut(s) 223, 279, 312
BslFI GGGAC 2 cut(s) 239, 361
BslI CCNNNNNNNGG 2 cut(s) 337, 385
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 239, 361
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 3 cut(s) 292, 330, 396
BsoBI CYCGRG 1 cut(s) 262
Bsp120I GGGCCC 2 cut(s) 290, 328
Bsp1286I GDGCHC 3 cut(s) 124, 294, 332
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 129, 366
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 3 cut(s) 49, 127, 397
BspANI GGCC 3 cut(s) 292, 330, 396
BspCNI CTCAG 3 cut(s) 159, 189, 431
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 6 cut(s) 131, 221, 292, 310, 316, 330
BspPI GGATC 2 cut(s) 124, 137
BspT107I GGYRCC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 2 cut(s) 278, 311
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 2 cut(s) 278, 311
BssMI GATC 2 cut(s) 129, 366
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 287, 438
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 120, 387
BstDEI CTNAG 4 cut(s) 71, 167, 176, 418
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 132, 369
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 129, 366
BstMWI GCNNNNNNNGC 3 cut(s) 124, 177, 306
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 2 cut(s) 294, 332
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 84, 120, 416
BstX2I RGATCY 2 cut(s) 129, 366
BstYI RGATCY 2 cut(s) 129, 366
BsuRI GGCC 3 cut(s) 292, 330, 396
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 120, 387
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 2 cut(s) 278, 311
Cfr13I GGNCC 4 cut(s) 290, 291, 328, 329
CseI GACGC 2 cut(s) 236, 410
Csp6I GTAC 2 cut(s) 25, 276
CspAI ACCGGT 1 cut(s) 311
CviAII CATG 2 cut(s) 22, 295
CviQI GTAC 2 cut(s) 25, 276
DdeI CTNAG 4 cut(s) 71, 167, 176, 418
DpnI GATC 2 cut(s) 131, 368
DpnII GATC 2 cut(s) 129, 366
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EciI GGCGGA 2 cut(s) 64, 142
Eco24I GRGCYC 2 cut(s) 294, 332
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 294, 332
FaeI CATG 2 cut(s) 25, 298
FaiI YATR 4 cut(s) 23, 234, 296, 345
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 178, 210
FaqI GGGAC 2 cut(s) 239, 361
FatI CATG 2 cut(s) 21, 294
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 98, 109, 397, 405
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 2 cut(s) 294, 332
Fsp4HI GCNGC 4 cut(s) 98, 109, 397, 405
GlaI GCGC 1 cut(s) 390
GluI GCNGC 4 cut(s) 98, 109, 397, 405
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 3 cut(s) 292, 330, 396
HapII CCGG 3 cut(s) 223, 279, 312
HgaI GACGC 2 cut(s) 236, 410
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 25, 298
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HinfI GANTC 2 cut(s) 135, 252
HpaII CCGG 3 cut(s) 223, 279, 312
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 4 cut(s) 134, 156, 185, 421
Hpy188III TCNNGA 2 cut(s) 322, 364
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 404, 438
HpyAV CCTTC 3 cut(s) 204, 319, 328
HpyCH4III ACNGT 2 cut(s) 287, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 177, 306
HpyF3I CTNAG 4 cut(s) 71, 167, 176, 418
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 25, 298
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 2 cut(s) 129, 366
LmnI GCTCC 2 cut(s) 94, 225
LpnPI CCDG 7 cut(s) 31, 233, 236, 292, 325, 371, 392
Lsp1109I GCAGC 3 cut(s) 84, 120, 416
LweI GCATC 3 cut(s) 189, 234, 372
MalI GATC 2 cut(s) 131, 368
MboI GATC 2 cut(s) 129, 366
MboII GAAGA 2 cut(s) 198, 364
MflI RGATCY 2 cut(s) 129, 366
MhlI GDGCHC 3 cut(s) 124, 294, 332
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 4 cut(s) 32, 45, 50, 185
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 223, 279, 312
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 124, 177, 306
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 129, 366
NlaIII CATG 2 cut(s) 25, 298
NlaIV GGNNCC 6 cut(s) 131, 221, 292, 310, 316, 330
NmeAIII GCCGAG 1 cut(s) 103
NspI RCATGY 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 135, 252
PfoI TCCNGGA 1 cut(s) 222
PinAI ACCGGT 1 cut(s) 311
PkrI GCNGC 4 cut(s) 99, 110, 398, 406
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 6 cut(s) 131, 221, 292, 310, 316, 330
PspOMI GGGCCC 2 cut(s) 290, 328
PspPI GGNCC 4 cut(s) 290, 291, 328, 329
PsuI RGATCY 2 cut(s) 129, 366
RsaI GTAC 2 cut(s) 26, 277
RsaNI GTAC 2 cut(s) 25, 276
SalI GTCGAC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 98, 109, 397, 405
Sau3AI GATC 2 cut(s) 129, 366
Sau96I GGNCC 4 cut(s) 290, 291, 328, 329
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 124, 294, 332
SetI ASST 6 cut(s) 10, 72, 99, 162, 168, 173
SfaNI GCATC 3 cut(s) 189, 234, 372
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SsiI CCGC 3 cut(s) 49, 127, 397
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 287, 438
TaqI TCGA 2 cut(s) 85, 363
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 2 cut(s) 135, 252
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 3 cut(s) 97, 108, 404
TspGWI ACGGA 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 335
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.