Rroxscaffold_3G00223830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007809
Physical Location & Seq
Reverse (-)
6951638 .. 6952189
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223830.1

Sequence Viewer

Length: 402 bp
ATGGAAGGGGTCTCTAGAAGCATGTACAAAGGTCCGAGAGGATACCGGCGAAGGAGAGGCTACAAAAAGCTAAGTGGGTCGGGCCGACGCCACAAGAACCGGATGGAGCTGCCTTCACCCCGTAAAAGGTGCTTGTGGTGGATCAAAATGGCTCCCAAGTTGAAGCTGAGTTGCCTCAGAAGAATCCCTTCACCAAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCCGAGATTCGCCAACTCGCGGGTGTTCACTACCGCCTACGGTGGTTCGGTATGTCATGGCGCTACCGGTTCATTCAGAAAAGGCCCCCTTAAGGAGTATGATGAGAAGATGATCATCGAGATCTACAAATCCTTGATGCTGGCGCAAGGTAAATTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.54

Weight (kDa)

10.95

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccII CGCG 1 cut(s) 259
AciI CCGC 2 cut(s) 259, 273
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 88, 222
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 3 cut(s) 126, 258, 331
AflII CTTAAG 1 cut(s) 329
AgeI ACCGGT 1 cut(s) 305
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 3 cut(s) 70, 109, 166
AluI AGCT 3 cut(s) 70, 109, 166
Alw26I GTCTC 2 cut(s) 16, 213
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 82, 322
ApeKI GCWGC 1 cut(s) 109
AsiGI ACCGGT 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 187
AspLEI GCGC 2 cut(s) 302, 385
AspS9I GGNCC 3 cut(s) 32, 82, 323
AsuHPI GGTGA 2 cut(s) 108, 183
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 97
BciVI GTATCC 1 cut(s) 35
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 16, 213
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 35
BglII AGATCT 1 cut(s) 360
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 3 cut(s) 32, 82, 323
BmiI GGNNCC 2 cut(s) 153, 325
BmsI GCATC 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 353
BsaHI GRCGYC 2 cut(s) 88, 222
BsaI GGTCTC 1 cut(s) 16
BsaWI WCCGGW 2 cut(s) 99, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 258, 331
Bse118I RCCGGY 2 cut(s) 45, 305
Bse8I GATNNNNATC 1 cut(s) 353
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 126, 258, 331
BseMII CTCAG 2 cut(s) 158, 190
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 84, 324
BshTI ACCGGT 1 cut(s) 305
BsiSI CCGG 3 cut(s) 46, 100, 306
BslI CCNNNNNNNGG 3 cut(s) 126, 258, 331
BsmAI GTCTC 2 cut(s) 16, 213
BsmBI CGTCTC 1 cut(s) 213
BsnI GGCC 2 cut(s) 84, 324
Bso31I GGTCTC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 3 cut(s) 141, 351, 360
BspACI CCGC 2 cut(s) 259, 273
BspANI GGCC 2 cut(s) 84, 324
BspCNI CTCAG 2 cut(s) 159, 189
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 153, 325
BspPI GGATC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 45, 305
BsrGI TGTACA 1 cut(s) 24
BssAI RCCGGY 2 cut(s) 45, 305
BssMI GATC 3 cut(s) 141, 351, 360
BssNI GRCGYC 2 cut(s) 88, 222
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 2 cut(s) 88, 222
BstAFI CTTAAG 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 71, 167, 176
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 302, 385
BstKTI GATC 3 cut(s) 144, 354, 363
BstMAI GTCTC 2 cut(s) 16, 213
BstMBI GATC 3 cut(s) 141, 351, 360
BstNSI RCATGY 1 cut(s) 25
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 84, 324
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 2 cut(s) 302, 385
Cfr10I RCCGGY 2 cut(s) 45, 305
Cfr13I GGNCC 3 cut(s) 32, 82, 323
CseI GACGC 2 cut(s) 96, 230
Csp6I GTAC 1 cut(s) 25
CspAI ACCGGT 1 cut(s) 305
CviAII CATG 3 cut(s) 22, 238, 296
CviJI RGCY 8 cut(s) 60, 70, 84, 109, 152, 166, 214, 324
CviKI_1 RGCY 8 cut(s) 60, 70, 84, 109, 152, 166, 214, 324
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 71, 167, 176
DpnI GATC 3 cut(s) 143, 353, 362
DpnII GATC 3 cut(s) 141, 351, 360
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 3 cut(s) 25, 241, 299
FaiI YATR 6 cut(s) 23, 228, 239, 292, 297, 339
FalI AAGNNNNNCTT 4 cut(s) 172, 204, 312, 344
FatI CATG 3 cut(s) 21, 237, 295
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 301, 384
GluI GCNGC 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 2 cut(s) 84, 324
HapII CCGG 3 cut(s) 46, 100, 306
HgaI GACGC 2 cut(s) 96, 230
HhaI GCGC 2 cut(s) 302, 385
Hin1I GRCGYC 2 cut(s) 88, 222
Hin1II CATG 3 cut(s) 25, 241, 299
Hin6I GCGC 2 cut(s) 300, 383
HinP1I GCGC 2 cut(s) 300, 383
HinfI GANTC 2 cut(s) 183, 246
HpaII CCGG 3 cut(s) 46, 100, 306
HphI GGTGA 2 cut(s) 108, 183
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 36, 179, 317
Hpy188III TCNNGA 3 cut(s) 15, 218, 358
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 45, 123, 198
HpyCH4III ACNGT 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 71, 167, 176
Hsp92I GRCGYC 2 cut(s) 88, 222
Hsp92II CATG 3 cut(s) 25, 241, 299
HspAI GCGC 2 cut(s) 300, 383
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 3 cut(s) 141, 351, 360
LmnI GCTCC 2 cut(s) 106, 157
LpnPI CCDG 4 cut(s) 59, 113, 319, 365
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 15
MalI GATC 3 cut(s) 143, 353, 362
MboI GATC 3 cut(s) 141, 351, 360
MboII GAAGA 2 cut(s) 192, 358
MflI RGATCY 1 cut(s) 360
MluCI AATT 1 cut(s) 392
MnlI CCTC 3 cut(s) 32, 50, 185
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 3 cut(s) 46, 100, 306
MvnI CGCG 1 cut(s) 259
NdeII GATC 3 cut(s) 141, 351, 360
NlaIII CATG 3 cut(s) 25, 241, 299
NlaIV GGNNCC 2 cut(s) 153, 325
NmeAIII GCCGAG 1 cut(s) 267
NspI RCATGY 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 183, 246
PinAI ACCGGT 1 cut(s) 305
PkrI GCNGC 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 153, 325
PspPI GGNCC 3 cut(s) 32, 82, 323
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 141, 351, 360
Sau96I GGNCC 3 cut(s) 32, 82, 323
SetI ASST 6 cut(s) 34, 72, 111, 131, 168, 391
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 392
SsiI CCGC 2 cut(s) 259, 273
SspMI CTAG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 217, 357
TasI AATT 1 cut(s) 392
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 2 cut(s) 183, 246
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 300
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.