Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Reverse (-)

20046545 .. 20049858

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28940.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAGGGGTCTCTGCAACCGTGCACAAAGGTCTGAGAGGATACTGGCGACGGAGAGGCTACAAAAAGCTAAGCGGGAACGGGAAGAAGAGGAGGCGCGTGTGGCGGAGGAGGATCAAATTGGCTCCCAAGCTCAAGCTCCGAATTACAAGATTCCCAAAGTTTCTCGTTTGGCTTCGAGACGCCTATGTCAACCTCATGATGCGATTCGCCAACTCGCGCGTGTTTACTACCTCCTACGGCGGCTCCGTCTGTCACGGGGGCTCCTTCGGAACACGGCCGCTTAAGGAGTATGATGACAAGATCATCATCGACATCTACAAATCCTTGATGCTCTCCCAACCTCCCCCGCCACCCACCCACCTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.39

Weight (kDa)

11.33

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccII	CGCG	3 cut(s)	99, 220, 222
AciI	CCGC	5 cut(s)	75, 106, 243, 281, 350
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	183
AflII	CTTAAG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	70, 133, 139
AluI	AGCT	3 cut(s)	70, 133, 139
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	16, 174
Alw44I	GTGCAC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	99, 222
BaeGI	GKGCMC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	27
BceAI	ACGGC	2 cut(s)	256, 293
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	16, 174
BfaI	CTAG	1 cut(s)	370
BfrI	CTTAAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	244, 281
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	245, 282
BmiI	GGNNCC	3 cut(s)	126, 247, 265
BmsI	GCATC	2 cut(s)	192, 321
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	16
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 248, 260, 278
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	308
BseJI	GATNNNNATC	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	106, 124
BseSI	GKGCMC	1 cut(s)	27
BseX3I	CGGCCG	1 cut(s)	278
Bsh1236I	CGCG	3 cut(s)	99, 220, 222
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	16, 174
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	27, 266
Bsp143I	GATC	2 cut(s)	114, 303
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	5 cut(s)	75, 106, 243, 281, 350
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	3 cut(s)	99, 220, 222
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	126, 247, 265
BspPI	GGATC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	114, 303
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	35, 71
BstFNI	CGCG	3 cut(s)	99, 220, 222
BstHHI	GCGC	2 cut(s)	99, 222
BstKTI	GATC	2 cut(s)	117, 306
BstMAI	GTCTC	2 cut(s)	16, 174
BstMBI	GATC	2 cut(s)	114, 303
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	3 cut(s)	99, 220, 222
BstZI	CGGCCG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	2 cut(s)	99, 222
CseI	GACGC	1 cut(s)	191
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	9 cut(s)	60, 70, 125, 133, 139, 175, 246, 264, 280
CviKI_1	RGCY	9 cut(s)	60, 70, 125, 133, 139, 175, 246, 264, 280
DdeI	CTNAG	2 cut(s)	35, 71
DpnI	GATC	2 cut(s)	116, 305
DpnII	GATC	2 cut(s)	114, 303
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	189, 200, 294
FatI	CATG	1 cut(s)	198
FauI	CCCGC	2 cut(s)	68, 357
Fnu4HI	GCNGC	2 cut(s)	244, 281
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	244, 281
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	2 cut(s)	98, 221
GluI	GCNGC	2 cut(s)	244, 281
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	99, 222
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	97, 220
HinP1I	GCGC	2 cut(s)	97, 220
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	153, 207
Hpy166II	GTNNAC	3 cut(s)	25, 193, 228
Hpy188I	TCNGA	3 cut(s)	36, 143, 272
Hpy188III	TCNNGA	2 cut(s)	179, 199
Hpy8I	GTNNAC	3 cut(s)	25, 193, 228
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	17, 25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	35, 71
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	2 cut(s)	97, 220
Kzo9I	GATC	2 cut(s)	114, 303
LmnI	GCTCC	4 cut(s)	130, 144, 251, 269
LpnPI	CCDG	1 cut(s)	31
LweI	GCATC	2 cut(s)	192, 321
MaeI	CTAG	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	116, 305
MboI	GATC	2 cut(s)	114, 303
MboII	GAAGA	2 cut(s)	97, 100
MhlI	GDGCHC	2 cut(s)	27, 266
MluCI	AATT	2 cut(s)	119, 144
MnlI	CCTC	9 cut(s)	32, 50, 84, 87, 102, 105, 206, 244, 354
MseI	TTAA	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	284
MvnI	CGCG	3 cut(s)	99, 220, 222
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	114, 303
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	3 cut(s)	126, 247, 265
NmuCI	GTSAC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	153, 207
PkrI	GCNGC	2 cut(s)	245, 282
PspN4I	GGNNCC	3 cut(s)	126, 247, 265
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	244, 281
Sau3AI	GATC	2 cut(s)	114, 303
SduI	GDGCHC	2 cut(s)	27, 266
SetI	ASST	8 cut(s)	34, 72, 135, 141, 198, 236, 346, 366
SfaNI	GCATC	2 cut(s)	192, 321
SmlI	CTYRAG	2 cut(s)	134, 284
SmoI	CTYRAG	2 cut(s)	134, 284
Sse9I	AATT	2 cut(s)	119, 144
SsiI	CCGC	5 cut(s)	75, 106, 243, 281, 350
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	178, 312
TasI	AATT	2 cut(s)	119, 144
TauI	GCSGC	2 cut(s)	246, 283
TfiI	GAWTC	2 cut(s)	153, 207
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspGWI	ACGGA	2 cut(s)	67, 238
Vha464I	CTTAAG	1 cut(s)	284
VneI	GTGCAC	1 cut(s)	23
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.