Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

66368749 .. 66369174

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTACAAAGGTCTGAGAGGATACTGGCGAAGGAGAGGCTACAAAAAGCTAAGTGGGTCGGGCCGACGCCACAAGAACCGGATGGAGCTGCCTTCACCCCGTAAAAGGCGCGTGTGGCGGATCAAAATGTCTCCCAAGTTGAAGCTGAGTTGCCTCAGAAGAATCCCTTCACCCAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGAGATTCGCCAACTCGCGGGTGTTCACTACCGCCTACGGTGGTTCCGTATGTCATGGCGCTACTGGTTCATTCGGAAAAGGCCCCCTTAAGGAGTATGATGAGAAGATGATCATCGAGATCTACAAATCCTTGATGCTAGCGCAAGGTCCGTTGGTGCCCCGCGACGCACCTAAACTAGGCTCAGAAATTGTTTACCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.45

Weight (kDa)

10.95

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	3 cut(s)	111, 238, 384
AciI	CCGC	5 cut(s)	118, 238, 252, 382, 418
AclWI	GGATC	1 cut(s)	128
AcyI	GRCGYC	2 cut(s)	67, 201
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	105, 237, 310, 398
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	3 cut(s)	49, 88, 145
AluI	AGCT	3 cut(s)	49, 88, 145
Alw26I	GTCTC	2 cut(s)	135, 192
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	61, 301
ApeKI	GCWGC	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	166
AspLEI	GCGC	3 cut(s)	111, 281, 364
AspS9I	GGNCC	3 cut(s)	61, 302, 368
AsuHPI	GGTGA	2 cut(s)	87, 162
AsuNHI	GCTAGC	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	135, 192
BfaI	CTAG	2 cut(s)	359, 398
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	61, 302, 368
BmiI	GGNNCC	3 cut(s)	265, 304, 378
BmsI	GCATC	1 cut(s)	345
BmtI	GCTAGC	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	67, 201
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 237, 310, 398
Bse1I	ACTGG	3 cut(s)	29, 289, 421
Bse8I	GATNNNNATC	1 cut(s)	332
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	4 cut(s)	105, 237, 310, 398
BseMII	CTCAG	5 cut(s)	5, 137, 169, 212, 417
BseNI	ACTGG	3 cut(s)	29, 289, 421
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	75
Bsh1236I	CGCG	3 cut(s)	111, 238, 384
BshFI	GGCC	2 cut(s)	63, 303
BshNI	GGYRCC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	105, 237, 310, 398
BsmAI	GTCTC	2 cut(s)	135, 192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	63, 303
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	120, 330, 339
BspACI	CCGC	5 cut(s)	118, 238, 252, 382, 418
BspANI	GGCC	2 cut(s)	63, 303
BspCNI	CTCAG	5 cut(s)	6, 138, 168, 213, 416
BspFNI	CGCG	3 cut(s)	111, 238, 384
BspLI	GGNNCC	3 cut(s)	265, 304, 378
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	376
BspTI	CTTAAG	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	29, 289, 421
BssMI	GATC	3 cut(s)	120, 330, 339
BssNI	GRCGYC	2 cut(s)	67, 201
Bst4CI	ACNGT	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	67, 201
BstAFI	CTTAAG	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	6 cut(s)	14, 50, 146, 155, 221, 403
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	3 cut(s)	111, 238, 384
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	111, 281, 364
BstKTI	GATC	3 cut(s)	123, 333, 342
BstMAI	GTCTC	2 cut(s)	135, 192
BstMBI	GATC	3 cut(s)	120, 330, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	3 cut(s)	111, 238, 384
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	63, 303
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	3 cut(s)	111, 281, 364
Cfr13I	GGNCC	3 cut(s)	61, 302, 368
CseI	GACGC	3 cut(s)	75, 209, 395
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	217, 275
CviJI	RGCY	8 cut(s)	39, 49, 63, 88, 145, 193, 303, 402
CviKI_1	RGCY	8 cut(s)	39, 49, 63, 88, 145, 193, 303, 402
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	6 cut(s)	14, 50, 146, 155, 221, 403
DpnI	GATC	3 cut(s)	122, 332, 341
DpnII	GATC	3 cut(s)	120, 330, 339
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	2 cut(s)	220, 278
FaiI	YATR	5 cut(s)	207, 218, 271, 276, 318
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 291, 323
FatI	CATG	2 cut(s)	216, 274
FauI	CCCGC	2 cut(s)	231, 389
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	359, 398
GlaI	GCGC	3 cut(s)	110, 280, 363
GluI	GCNGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	63, 303
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	3 cut(s)	75, 209, 395
HhaI	GCGC	3 cut(s)	111, 281, 364
Hin1I	GRCGYC	2 cut(s)	67, 201
Hin1II	CATG	2 cut(s)	220, 278
Hin6I	GCGC	3 cut(s)	109, 279, 362
HinP1I	GCGC	3 cut(s)	109, 279, 362
HinfI	GANTC	2 cut(s)	162, 225
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	87, 162
Hpy166II	GTNNAC	2 cut(s)	246, 415
Hpy188I	TCNGA	4 cut(s)	15, 158, 296, 406
Hpy188III	TCNNGA	2 cut(s)	197, 337
Hpy8I	GTNNAC	2 cut(s)	246, 415
Hpy99I	CGWCG	2 cut(s)	69, 389
HpyAV	CCTTC	3 cut(s)	24, 102, 177
HpyCH4III	ACNGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	6 cut(s)	14, 50, 146, 155, 221, 403
Hsp92I	GRCGYC	2 cut(s)	67, 201
Hsp92II	CATG	2 cut(s)	220, 278
HspAI	GCGC	3 cut(s)	109, 279, 362
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	120, 330, 339
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	10, 92, 270
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	359, 398
MalI	GATC	3 cut(s)	122, 332, 341
MboI	GATC	3 cut(s)	120, 330, 339
MboII	GAAGA	2 cut(s)	171, 337
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	1 cut(s)	408
MnlI	CCTC	3 cut(s)	11, 29, 164
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	309
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	79
MvnI	CGCG	3 cut(s)	111, 238, 384
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	120, 330, 339
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	220, 278
NlaIV	GGNNCC	3 cut(s)	265, 304, 378
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	162, 225
PkrI	GCNGC	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	265, 304, 378
PspPI	GGNCC	3 cut(s)	61, 302, 368
PsuI	RGATCY	1 cut(s)	339
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	120, 330, 339
Sau96I	GGNCC	3 cut(s)	61, 302, 368
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	6 cut(s)	13, 51, 90, 147, 370, 394
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	5 cut(s)	118, 238, 252, 382, 418
SspMI	CTAG	2 cut(s)	359, 398
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	196, 336
TasI	AATT	1 cut(s)	408
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	162, 225
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	2 cut(s)	256, 360
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	359, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.