Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

69516314 .. 69516658

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG489500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGTTGCCTTCACCCCGTAAAAAGCGCGTGTGGCGGATCAAAATGGCTCCCAAGTTGAAGCTAAGTTGCCTCAGAAGAATCCCTTCACCCAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGAGATTCGCCAACTCGCGGGTGTTCACTACCTCCTACGGTGGTTCCGTATGTCATGGCGCTACTGATTCATTCGGAAAAGGCCACCTTAAGGAGTATGATCAGAAGATGATCATTGAGATCTACAAATCCTTGATGCTGGCGCAAGGTCAGTTGGTGCCCCGCGACGCACCAAAACTGGGCTCAGAAATTGTTTACCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.2

Weight (kDa)

10.29

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	3 cut(s)	30, 157, 303
AciI	CCGC	4 cut(s)	37, 157, 301, 337
AclWI	GGATC	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	156, 229, 317
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	3 cut(s)	30, 200, 283
AsuHPI	GGTGA	2 cut(s)	6, 81
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	323
BclI	TGATCA	2 cut(s)	238, 249
BcoDI	GTCTC	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	258
BmiI	GGNNCC	3 cut(s)	51, 184, 297
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 229, 317
Bse1I	ACTGG	2 cut(s)	321, 340
BseLI	CCNNNNNNNGG	3 cut(s)	156, 229, 317
BseMII	CTCAG	3 cut(s)	88, 131, 336
BseNI	ACTGG	2 cut(s)	321, 340
BseSI	GKGCMC	1 cut(s)	300
Bsh1236I	CGCG	3 cut(s)	30, 157, 303
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	156, 229, 317
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	300, 323
Bsp143I	GATC	4 cut(s)	39, 238, 249, 258
BspACI	CCGC	4 cut(s)	37, 157, 301, 337
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	3 cut(s)	87, 132, 335
BspFNI	CGCG	3 cut(s)	30, 157, 303
BspLI	GGNNCC	3 cut(s)	51, 184, 297
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	321, 340
BssMI	GATC	4 cut(s)	39, 238, 249, 258
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	65, 74, 140, 322
BstFNI	CGCG	3 cut(s)	30, 157, 303
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	30, 200, 283
BstKTI	GATC	4 cut(s)	42, 241, 252, 261
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	4 cut(s)	39, 238, 249, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	3 cut(s)	30, 157, 303
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	3 cut(s)	30, 200, 283
CseI	GACGC	2 cut(s)	128, 314
CviAII	CATG	2 cut(s)	136, 194
CviJI	RGCY	5 cut(s)	50, 64, 112, 222, 321
CviKI_1	RGCY	5 cut(s)	50, 64, 112, 222, 321
DdeI	CTNAG	4 cut(s)	65, 74, 140, 322
DpnI	GATC	4 cut(s)	41, 240, 251, 260
DpnII	GATC	4 cut(s)	39, 238, 249, 258
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	139, 197
FaiI	YATR	5 cut(s)	126, 137, 190, 195, 237
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 210, 242
FatI	CATG	2 cut(s)	135, 193
FauI	CCCGC	2 cut(s)	150, 308
FbaI	TGATCA	2 cut(s)	238, 249
FriOI	GRGCYC	1 cut(s)	323
GlaI	GCGC	3 cut(s)	29, 199, 282
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	222
HgaI	GACGC	2 cut(s)	128, 314
HhaI	GCGC	3 cut(s)	30, 200, 283
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	139, 197
Hin6I	GCGC	3 cut(s)	28, 198, 281
HinP1I	GCGC	3 cut(s)	28, 198, 281
HinfI	GANTC	3 cut(s)	81, 144, 206
HphI	GGTGA	2 cut(s)	6, 81
Hpy166II	GTNNAC	2 cut(s)	165, 334
Hpy188I	TCNGA	4 cut(s)	77, 215, 243, 325
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	165, 334
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	21, 96
HpyCH4III	ACNGT	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	4 cut(s)	65, 74, 140, 322
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	139, 197
HspAI	GCGC	3 cut(s)	28, 198, 281
Ksp22I	TGATCA	2 cut(s)	238, 249
Kzo9I	GATC	4 cut(s)	39, 238, 249, 258
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	263, 302
LweI	GCATC	1 cut(s)	264
MalI	GATC	4 cut(s)	41, 240, 251, 260
MboI	GATC	4 cut(s)	39, 238, 249, 258
MboII	GAAGA	2 cut(s)	90, 256
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	300, 323
MluCI	AATT	1 cut(s)	327
MnlI	CCTC	2 cut(s)	83, 181
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	227
MvnI	CGCG	3 cut(s)	30, 157, 303
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	4 cut(s)	39, 238, 249, 258
NlaIII	CATG	2 cut(s)	139, 197
NlaIV	GGNNCC	3 cut(s)	51, 184, 297
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	81, 144, 206
PspN4I	GGNNCC	3 cut(s)	51, 184, 297
PsuI	RGATCY	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	39, 238, 249, 258
SduI	GDGCHC	2 cut(s)	300, 323
SetI	ASST	4 cut(s)	66, 173, 228, 289
SfaNI	GCATC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	4 cut(s)	37, 157, 301, 337
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	115
TasI	AATT	1 cut(s)	327
TfiI	GAWTC	3 cut(s)	81, 144, 206
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.