Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

23168061 .. 23169187

Gene Structure 1127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGATAACGCCGAAGAGGTACTGGAGGAGGTGGAGAGGATACGAGAAGCTTGATGGGTCATCGGAGACGACTTCGGGTCGAAGGAAAGGCAAAAGGGTCAAAATGGATCCGACTCGCAAGAAACGTTTTTGGAGGATCAAGATTGTGCCGAAACTGAGGATCCTTAAAACGGCGTCGCCGAAGAAGTTCTTGGTGTGGCTACGTGATTCATATGTTAAGATGATGATGCGGTTGGCTAACTCACGGGTTGTTGGATCTTCTGGATACGGTGGATCCGGATTCGGGTCAGGTCAGATGAAGGAGTACGATGAGAAAATGCTTGTGGAGATTTACAAGTCGATACTGATGGTGCAGGCGCAGGGGAATCTCGTGCACCGCGACACACCTAATAATAATCTTAAGCTTCCTTCAGAACCAGCGGTTGTCTCTGTCGTATCTTCTGTTGTTACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.5

Weight (kDa)

10.51

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	3 cut(s)	232, 379, 422
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	8 cut(s)	104, 117, 146, 157, 170, 265, 270, 283
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	23, 308
AfiI	CCNNNNNNNGG	2 cut(s)	172, 285
AflII	CTTAAG	1 cut(s)	401
AhdI	GACNNNNNGTC	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	52, 406
AluI	AGCT	2 cut(s)	52, 406
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	62, 433
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	8 cut(s)	104, 117, 146, 157, 170, 265, 270, 283
Aor13HI	TCCGGA	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	378
BamHI	GGATCC	3 cut(s)	109, 162, 275
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	2 cut(s)	50, 343
BceAI	ACGGC	1 cut(s)	189
BciVI	GTATCC	2 cut(s)	35, 260
BcoDI	GTCTC	2 cut(s)	62, 433
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	2 cut(s)	35, 260
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	111, 164, 277
BmsI	GCATC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 285
Bse1I	ACTGG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	172, 285
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	172, 285
BsmAI	GTCTC	2 cut(s)	62, 433
BsmBI	CGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	109, 138, 162, 257, 275
BspACI	CCGC	3 cut(s)	232, 379, 422
BspCNI	CTCAG	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	111, 164, 277
BspPI	GGATC	8 cut(s)	104, 117, 146, 157, 170, 265, 270, 283
BspTI	CTTAAG	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	109, 138, 162, 257, 275
BssNI	GRCGYC	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	112, 141, 165, 260, 278
BstMAI	GTCTC	2 cut(s)	62, 433
BstMBI	GATC	5 cut(s)	109, 138, 162, 257, 275
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	1 cut(s)	381
BstX2I	RGATCY	4 cut(s)	109, 162, 257, 275
BstYI	RGATCY	4 cut(s)	109, 162, 257, 275
BsuI	GTATCC	2 cut(s)	35, 260
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	361
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	22, 307
CviJI	RGCY	4 cut(s)	52, 202, 239, 406
CviKI_1	RGCY	4 cut(s)	52, 202, 239, 406
CviQI	GTAC	2 cut(s)	22, 307
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	5 cut(s)	111, 140, 164, 259, 277
DpnII	GATC	5 cut(s)	109, 138, 162, 257, 275
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	62
FaiI	YATR	2 cut(s)	214, 216
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FauNDI	CATATG	1 cut(s)	214
GlaI	GCGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	46
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	2 cut(s)	50, 404
HinfI	GANTC	4 cut(s)	115, 209, 282, 367
HpaII	CCGG	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	67, 114, 297, 415
Hpy188III	TCNNGA	3 cut(s)	142, 264, 279
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	78, 295, 420
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	2 cut(s)	127, 205
HpyCH4V	TGCA	2 cut(s)	355, 376
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	127, 205
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	5 cut(s)	109, 138, 162, 257, 275
LpnPI	CCDG	7 cut(s)	10, 249, 276, 292, 341, 347, 432
LweI	GCATC	1 cut(s)	219
MaeII	ACGT	2 cut(s)	127, 205
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	5 cut(s)	111, 140, 164, 259, 277
MboI	GATC	5 cut(s)	109, 138, 162, 257, 275
MboII	GAAGA	4 cut(s)	28, 196, 252, 432
MflI	RGATCY	4 cut(s)	109, 162, 257, 275
MhlI	GDGCHC	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	137, 235
MnlI	CCTC	6 cut(s)	12, 21, 24, 32, 129, 153
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	3 cut(s)	168, 219, 402
MspA1I	CMGCKG	1 cut(s)	422
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	5 cut(s)	109, 138, 162, 257, 275
NlaIV	GGNNCC	3 cut(s)	111, 164, 277
PcsI	WCGNNNNNNNCGW	3 cut(s)	124, 179, 378
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	209, 282, 367
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	111, 164, 277
PsuI	RGATCY	4 cut(s)	109, 162, 257, 275
RsaI	GTAC	2 cut(s)	23, 308
RsaNI	GTAC	2 cut(s)	22, 307
SaqAI	TTAA	3 cut(s)	168, 219, 402
Sau3AI	GATC	5 cut(s)	109, 138, 162, 257, 275
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	8 cut(s)	23, 35, 54, 130, 208, 295, 391, 408
SfaNI	GCATC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SsiI	CCGC	3 cut(s)	232, 379, 422
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	2 cut(s)	130, 208
TaqI	TCGA	2 cut(s)	82, 341
TfiI	GAWTC	3 cut(s)	209, 282, 367
Tru1I	TTAA	3 cut(s)	168, 219, 402
Tru9I	TTAA	3 cut(s)	168, 219, 402
TspDTI	ATGAA	2 cut(s)	201, 314
Vha464I	CTTAAG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.