Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

69517431 .. 69517877

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG489600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGGGGTCTCTACAAGCATGTACAAAGGTCTGAGGGGATACTGGCGAAGGAGAGGCTACAAAAAGCTAAGTGGGTCGGGCCGACGCCACAAGAACCGGATGGAGCTGCCTTCACCCCGTAAAAAGCGCGTGTGGCGGATCAAAATGGCTCCCAAGTTGAAGCTAAGTTGCCTCAGAAGAATCCCTTCACCCAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGAGATTCGCCAACTCGCGGGTGTTCACTACCTCCTACGGTGGTTCCGTATGTCATGGCGCTACTGATTCATTCGGAAAAGGCCCCCTTAAGGAGTATGATCAGAAGATGATCATTGAGATCTACAAATCCTTGATGCTGGCGCAAGGTCAGTTGGTGCCCCGCGACGCACCAAAACTGGGCTCAGAAATTGTTTACCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.2

Weight (kDa)

10.74

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	397
AccII	CGCG	3 cut(s)	132, 259, 405
AciI	CCGC	4 cut(s)	139, 259, 403, 439
AclWI	GGATC	1 cut(s)	149
AcyI	GRCGYC	2 cut(s)	88, 222
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	258, 331, 419
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	70, 109, 166
AluI	AGCT	3 cut(s)	70, 109, 166
Alw26I	GTCTC	2 cut(s)	16, 213
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	82, 322
ApeKI	GCWGC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	3 cut(s)	132, 302, 385
AspS9I	GGNCC	2 cut(s)	82, 323
AsuHPI	GGTGA	2 cut(s)	108, 183
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	2 cut(s)	340, 351
BcoDI	GTCTC	2 cut(s)	16, 213
BfoI	RGCGCY	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	82, 323
BmiI	GGNNCC	4 cut(s)	153, 286, 325, 399
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	428
BsaHI	GRCGYC	2 cut(s)	88, 222
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 331, 419
Bse1I	ACTGG	3 cut(s)	50, 423, 442
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	258, 331, 419
BseMII	CTCAG	4 cut(s)	26, 190, 233, 438
BseNI	ACTGG	3 cut(s)	50, 423, 442
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	3 cut(s)	132, 259, 405
BshFI	GGCC	2 cut(s)	84, 324
BshNI	GGYRCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	3 cut(s)	258, 331, 419
BsmAI	GTCTC	2 cut(s)	16, 213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	84, 324
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	402, 425
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	141, 340, 351, 360
BspACI	CCGC	4 cut(s)	139, 259, 403, 439
BspANI	GGCC	2 cut(s)	84, 324
BspCNI	CTCAG	4 cut(s)	27, 189, 234, 437
BspFNI	CGCG	3 cut(s)	132, 259, 405
BspLI	GGNNCC	4 cut(s)	153, 286, 325, 399
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	50, 423, 442
BssMI	GATC	4 cut(s)	141, 340, 351, 360
BssNI	GRCGYC	2 cut(s)	88, 222
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	88, 222
BstAFI	CTTAAG	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 424
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	3 cut(s)	132, 259, 405
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	132, 302, 385
BstKTI	GATC	4 cut(s)	144, 343, 354, 363
BstMAI	GTCTC	2 cut(s)	16, 213
BstMBI	GATC	4 cut(s)	141, 340, 351, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	3 cut(s)	132, 259, 405
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	84, 324
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	3 cut(s)	132, 302, 385
Cfr13I	GGNCC	2 cut(s)	82, 323
CseI	GACGC	3 cut(s)	96, 230, 416
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	22, 238, 296
CviJI	RGCY	9 cut(s)	60, 70, 84, 109, 152, 166, 214, 324, 423
CviKI_1	RGCY	9 cut(s)	60, 70, 84, 109, 152, 166, 214, 324, 423
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 424
DpnI	GATC	4 cut(s)	143, 342, 353, 362
DpnII	GATC	4 cut(s)	141, 340, 351, 360
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	25, 241, 299
FaiI	YATR	6 cut(s)	23, 228, 239, 292, 297, 339
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 312, 344
FatI	CATG	3 cut(s)	21, 237, 295
FauI	CCCGC	2 cut(s)	252, 410
FbaI	TGATCA	2 cut(s)	340, 351
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	110
GlaI	GCGC	3 cut(s)	131, 301, 384
GluI	GCNGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	84, 324
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	3 cut(s)	96, 230, 416
HhaI	GCGC	3 cut(s)	132, 302, 385
Hin1I	GRCGYC	2 cut(s)	88, 222
Hin1II	CATG	3 cut(s)	25, 241, 299
Hin6I	GCGC	3 cut(s)	130, 300, 383
HinP1I	GCGC	3 cut(s)	130, 300, 383
HinfI	GANTC	3 cut(s)	183, 246, 308
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	108, 183
Hpy166II	GTNNAC	2 cut(s)	267, 436
Hpy188I	TCNGA	5 cut(s)	36, 179, 317, 345, 427
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	267, 436
Hpy99I	CGWCG	2 cut(s)	90, 410
HpyAV	CCTTC	3 cut(s)	45, 123, 198
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	6 cut(s)	35, 71, 167, 176, 242, 424
Hsp92I	GRCGYC	2 cut(s)	88, 222
Hsp92II	CATG	3 cut(s)	25, 241, 299
HspAI	GCGC	3 cut(s)	130, 300, 383
Ksp22I	TGATCA	2 cut(s)	340, 351
Kzo9I	GATC	4 cut(s)	141, 340, 351, 360
LmnI	GCTCC	2 cut(s)	106, 157
LpnPI	CCDG	4 cut(s)	31, 113, 365, 404
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	366
MalI	GATC	4 cut(s)	143, 342, 353, 362
MboI	GATC	4 cut(s)	141, 340, 351, 360
MboII	GAAGA	2 cut(s)	192, 358
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	2 cut(s)	402, 425
MluCI	AATT	1 cut(s)	429
MnlI	CCTC	4 cut(s)	30, 50, 185, 283
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	100
MvnI	CGCG	3 cut(s)	132, 259, 405
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	4 cut(s)	141, 340, 351, 360
NlaIII	CATG	3 cut(s)	25, 241, 299
NlaIV	GGNNCC	4 cut(s)	153, 286, 325, 399
NspI	RCATGY	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	183, 246, 308
PkrI	GCNGC	1 cut(s)	111
PspN4I	GGNNCC	4 cut(s)	153, 286, 325, 399
PspPI	GGNCC	2 cut(s)	82, 323
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	4 cut(s)	141, 340, 351, 360
Sau96I	GGNCC	2 cut(s)	82, 323
SduI	GDGCHC	2 cut(s)	402, 425
SetI	ASST	6 cut(s)	34, 72, 111, 168, 275, 391
SfaNI	GCATC	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	4 cut(s)	139, 259, 403, 439
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	217
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	183, 246, 308
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.