Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Reverse (-)

1449727 .. 1450260

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAGGGGTCTCCACAAGCATGTACAAAGGTCTGAGAGGATACTGGCGAAGGAGAGGCTACCAAAAGCTAAGAGGGTCGGGCCGACGCCACAAGAACCGGATGGAGCTGCGTTCACCCCGTAAAAGGCGCGTGTGGCGGATCAAAATGGCTCCCAAGCTGAAGCTGAGTTTCCTCAGAAGAATCCCTTCACCTAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGGGATTCGCCAACTCGCGGGTGTTTACCACCGCCTACGGTGGTTCCGTATGTCATGGCGCCACTAGTTCATTCGGAAAAGGCCCCCTTAAGGAGTATGATGAGAAGATGATCATCGAGATCTACAAATCCTTGATGCTGGCGCAAGTTTATGCTTTTTCTTCTACTCTTTTCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.24

Weight (kDa)

11.06

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	2 cut(s)	132, 259
AciI	CCGC	3 cut(s)	139, 259, 273
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	3 cut(s)	88, 222, 300
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	126, 258, 331
AflII	CTTAAG	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	305
AluBI	AGCT	4 cut(s)	70, 109, 160, 166
AluI	AGCT	4 cut(s)	70, 109, 160, 166
Alw26I	GTCTC	2 cut(s)	16, 213
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	82, 322
ApeKI	GCWGC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	3 cut(s)	132, 302, 385
AspS9I	GGNCC	2 cut(s)	82, 323
AsuHPI	GGTGA	2 cut(s)	108, 183
BanI	GGYRCC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	16, 213
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	2 cut(s)	306, 418
BfoI	RGCGCY	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	35
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	82, 323
BmiI	GGNNCC	4 cut(s)	153, 286, 301, 325
BmsI	GCATC	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	3 cut(s)	88, 222, 300
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 258, 331
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	353
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	353
BseLI	CCNNNNNNNGG	3 cut(s)	126, 258, 331
BseMII	CTCAG	3 cut(s)	26, 158, 190
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	132, 259
BshFI	GGCC	2 cut(s)	84, 324
BshNI	GGYRCC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	3 cut(s)	126, 258, 331
BsmAI	GTCTC	2 cut(s)	16, 213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	84, 324
Bso31I	GGTCTC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	141, 351, 360
BspACI	CCGC	3 cut(s)	139, 259, 273
BspANI	GGCC	2 cut(s)	84, 324
BspCNI	CTCAG	3 cut(s)	27, 159, 189
BspFNI	CGCG	2 cut(s)	132, 259
BspLI	GGNNCC	4 cut(s)	153, 286, 301, 325
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	141, 351, 360
BssNI	GRCGYC	3 cut(s)	88, 222, 300
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	3 cut(s)	88, 222, 300
BstAFI	CTTAAG	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	5 cut(s)	35, 71, 167, 176, 195
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	2 cut(s)	132, 259
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	132, 302, 385
BstKTI	GATC	3 cut(s)	144, 354, 363
BstMAI	GTCTC	2 cut(s)	16, 213
BstMBI	GATC	3 cut(s)	141, 351, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	25
BstUI	CGCG	2 cut(s)	132, 259
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	84, 324
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	3 cut(s)	132, 302, 385
Cfr13I	GGNCC	2 cut(s)	82, 323
CseI	GACGC	2 cut(s)	96, 230
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	22, 238, 296
CviJI	RGCY	9 cut(s)	60, 70, 84, 109, 152, 160, 166, 214, 324
CviKI_1	RGCY	9 cut(s)	60, 70, 84, 109, 152, 160, 166, 214, 324
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	5 cut(s)	35, 71, 167, 176, 195
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	3 cut(s)	143, 353, 362
DpnII	GATC	3 cut(s)	141, 351, 360
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	25, 241, 299
FaiI	YATR	7 cut(s)	23, 228, 239, 292, 297, 339, 393
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 312, 344
FatI	CATG	3 cut(s)	21, 237, 295
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	2 cut(s)	306, 418
GlaI	GCGC	3 cut(s)	131, 301, 384
GluI	GCNGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	84, 324
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	2 cut(s)	96, 230
HhaI	GCGC	3 cut(s)	132, 302, 385
Hin1I	GRCGYC	3 cut(s)	88, 222, 300
Hin1II	CATG	3 cut(s)	25, 241, 299
Hin6I	GCGC	3 cut(s)	130, 300, 383
HinP1I	GCGC	3 cut(s)	130, 300, 383
HinfI	GANTC	2 cut(s)	183, 246
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	108, 183
Hpy166II	GTNNAC	2 cut(s)	116, 267
Hpy188I	TCNGA	3 cut(s)	36, 179, 317
Hpy188III	TCNNGA	2 cut(s)	218, 358
Hpy8I	GTNNAC	2 cut(s)	116, 267
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	45, 198
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	5 cut(s)	35, 71, 167, 176, 195
Hsp92I	GRCGYC	3 cut(s)	88, 222, 300
Hsp92II	CATG	3 cut(s)	25, 241, 299
HspAI	GCGC	3 cut(s)	130, 300, 383
KasI	GGCGCC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	141, 351, 360
LmnI	GCTCC	2 cut(s)	106, 157
LpnPI	CCDG	4 cut(s)	31, 113, 227, 365
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	306, 418
MalI	GATC	3 cut(s)	143, 353, 362
MboI	GATC	3 cut(s)	141, 351, 360
MboII	GAAGA	3 cut(s)	192, 358, 393
MflI	RGATCY	1 cut(s)	360
Mly113I	GGCGCC	1 cut(s)	300
MnlI	CCTC	4 cut(s)	32, 50, 68, 185
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	132, 259
MwoI	GCNNNNNNNGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	300
NdeII	GATC	3 cut(s)	141, 351, 360
NlaIII	CATG	3 cut(s)	25, 241, 299
NlaIV	GGNNCC	4 cut(s)	153, 286, 301, 325
NspI	RCATGY	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	183, 246
PkrI	GCNGC	1 cut(s)	111
PluTI	GGCGCC	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	153, 286, 301, 325
PspPI	GGNCC	2 cut(s)	82, 323
PsuI	RGATCY	1 cut(s)	360
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	141, 351, 360
Sau96I	GGNCC	2 cut(s)	82, 323
SetI	ASST	6 cut(s)	34, 72, 111, 162, 168, 196
SfaNI	GCATC	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	139, 259, 273
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	306, 418
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	217, 357
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	183, 246
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	306, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.