Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007809

Physical Location & Seq

Genomic Coordinates Forward (+)

69518423 .. 69525629

Gene Structure 7207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG489700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCATGCAAGTAAGCCATGCCAGAAAGGACAGCGACATTCAATAATCAAACGGCGAGGATCATCCGCACCTAGCACGTGCGATGTCCTCCCACATTCAATAATCATCAAGGACAGCGACACGCTTCAGAAATGCAGATCGATCGGAGCTAGCTACCGGCAAGAACACAGATCCATCGAAATTCAAGCATCAATGGAAGGGGTCTCTACAAGCATGTACAAAGGTCTGAGAGGATACTGGCGAAGGAGAGGCTACAAAAAGCTAAGTGGGTCGGGCCGACGCCACAAGAACCTGATGGAGTTGCCTTCACCCCGTAAAAGGCGCGTGTGGCGGATCAAAATGGTTCCCAAGTTGAAGCTGAGTTGCCTCAGAAGAATTCCTTCACCCAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGAGATTCGCCAACTCGCGGGTGTTCACTACCGCCTACGGTGGTTCCGTATGTCATGGCGCTACTGGTTCATTCGGAAAAGGCCCCCTTAAGGAGTATGATGAGAAGATGATCATCGAGATCTACAAATCCTTGGTGCTGGCGCAAGGTCAGTTGGTGCCCCGCGACGCACCTAAACTAGGCTCAGAAATTGTTTACCGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.22

Weight (kDa)

10.55

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47485 AT3G62650 AT3G62650
fragaria_vesca	FvH4_5g28940 FvH4_5g28940 FvH4_5g28940 FvH4_5g28940
malus_domestica	MD03G1298600.v1.1
prunus_persica	Prupe.8G268600_v2.0.a1
pyrus_communis	pycom03g23660
rosa_chinensis	RchiOBHm_Chr7g0242001
rosa_laevigata	RLG00000000520
rosa_multiflora	Rmu_sc0003559.1_g000010 Rmu_sc0003559.1_g000011
rosa_roxburghii	Rroxscaffold_3G00223830
rosa_rugosa	Rorug07G0349600
rosa_samantha	Rh7AG504300 Rh7BG476000 Rh7CG520700 Rh7DG489500 Rh7DG489600 Rh7DG489700
rosa_wichuraiana	Rw7G042620 Rw7G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	3 cut(s)	324, 451, 597
AciI	CCGC	6 cut(s)	66, 331, 451, 465, 595, 631
AclWI	GGATC	3 cut(s)	67, 165, 341
AcsI	RAATTY	2 cut(s)	180, 375
AcuI	CTGAAG	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	78
AcyI	GRCGYC	2 cut(s)	280, 414
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	318, 450, 523, 611
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	42, 99, 185, 355
AluBI	AGCT	4 cut(s)	149, 153, 262, 358
AluI	AGCT	4 cut(s)	149, 153, 262, 358
Alw26I	GTCTC	2 cut(s)	208, 405
AlwI	GGATC	3 cut(s)	67, 165, 341
AoxI	GGCC	2 cut(s)	274, 514
ApoI	RAATTY	2 cut(s)	180, 375
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	324, 494, 577
AspS9I	GGNCC	2 cut(s)	274, 515
AsuHPI	GGTGA	2 cut(s)	300, 375
AsuNHI	GCTAGC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	589
BbrPI	CACGTG	1 cut(s)	78
BccI	CCATC	2 cut(s)	182, 289
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciVI	GTATCC	1 cut(s)	227
BclI	TGATCA	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	208, 405
BfaI	CTAG	3 cut(s)	72, 150, 611
BfoI	RGCGCY	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	274, 515
BmiI	GGNNCC	4 cut(s)	345, 478, 517, 591
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	545
BsaHI	GRCGYC	2 cut(s)	280, 414
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 450, 523, 611
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	3 cut(s)	242, 502, 634
Bse8I	GATNNNNATC	1 cut(s)	545
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	4 cut(s)	318, 450, 523, 611
BseMII	CTCAG	5 cut(s)	218, 350, 382, 425, 630
BseNI	ACTGG	3 cut(s)	242, 502, 634
BseSI	GKGCMC	1 cut(s)	594
Bsh1236I	CGCG	3 cut(s)	324, 451, 597
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	276, 516
BshNI	GGYRCC	1 cut(s)	589
BshVI	ATCGAT	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	4 cut(s)	318, 450, 523, 611
BsmAI	GTCTC	2 cut(s)	208, 405
BsmBI	CGTCTC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	276, 516
Bso31I	GGTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
BspACI	CCGC	6 cut(s)	66, 331, 451, 465, 595, 631
BspANI	GGCC	2 cut(s)	276, 516
BspCNI	CTCAG	5 cut(s)	219, 351, 381, 426, 629
BspDI	ATCGAT	1 cut(s)	140
BspFNI	CGCG	3 cut(s)	324, 451, 597
BspLI	GGNNCC	4 cut(s)	345, 478, 517, 591
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	67, 165, 341
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	242, 502, 634
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
BssNI	GRCGYC	2 cut(s)	280, 414
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	473
BstACI	GRCGYC	2 cut(s)	280, 414
BstAFI	CTTAAG	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	3 cut(s)	6, 151, 573
BstDEI	CTNAG	6 cut(s)	227, 263, 359, 368, 434, 616
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	3 cut(s)	324, 451, 597
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	3 cut(s)	324, 494, 577
BstKTI	GATC	7 cut(s)	62, 140, 144, 173, 336, 546, 555
BstMAI	GTCTC	2 cut(s)	208, 405
BstMBI	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	8, 217
BstSLI	GKGCMC	1 cut(s)	594
BstUI	CGCG	3 cut(s)	324, 451, 597
BstX2I	RGATCY	2 cut(s)	170, 552
BstYI	RGATCY	2 cut(s)	170, 552
Bsu15I	ATCGAT	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	276, 516
BsuTUI	ATCGAT	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	3 cut(s)	6, 151, 573
CfoI	GCGC	3 cut(s)	324, 494, 577
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	274, 515
ClaI	ATCGAT	1 cut(s)	140
CseI	GACGC	3 cut(s)	288, 422, 608
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	5 cut(s)	5, 18, 214, 430, 488
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	6 cut(s)	227, 263, 359, 368, 434, 616
DpnI	GATC	7 cut(s)	61, 139, 143, 172, 335, 545, 554
DpnII	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	5 cut(s)	8, 21, 217, 433, 491
FaiI	YATR	8 cut(s)	6, 19, 215, 420, 431, 484, 489, 531
FalI	AAGNNNNNCTT	4 cut(s)	364, 396, 504, 536
FatI	CATG	5 cut(s)	4, 17, 213, 429, 487
FauI	CCCGC	2 cut(s)	444, 602
FbaI	TGATCA	1 cut(s)	543
FokI	GGATG	1 cut(s)	49
FspBI	CTAG	3 cut(s)	72, 150, 611
GlaI	GCGC	3 cut(s)	323, 493, 576
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	276, 516
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	3 cut(s)	288, 422, 608
HhaI	GCGC	3 cut(s)	324, 494, 577
Hin1I	GRCGYC	2 cut(s)	280, 414
Hin1II	CATG	5 cut(s)	8, 21, 217, 433, 491
Hin6I	GCGC	3 cut(s)	322, 492, 575
HinP1I	GCGC	3 cut(s)	322, 492, 575
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	300, 375
Hpy166II	GTNNAC	2 cut(s)	459, 628
Hpy188I	TCNGA	6 cut(s)	129, 146, 228, 371, 509, 619
Hpy188III	TCNNGA	2 cut(s)	410, 550
Hpy8I	GTNNAC	2 cut(s)	459, 628
Hpy99I	CGWCG	2 cut(s)	282, 602
HpyAV	CCTTC	4 cut(s)	191, 237, 315, 390
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	4, 8, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	6 cut(s)	227, 263, 359, 368, 434, 616
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	2 cut(s)	280, 414
Hsp92II	CATG	5 cut(s)	8, 21, 217, 433, 491
HspAI	GCGC	3 cut(s)	322, 492, 575
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	6 cut(s)	35, 170, 223, 305, 483, 557
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	3 cut(s)	72, 150, 611
MaeII	ACGT	1 cut(s)	77
MalI	GATC	7 cut(s)	61, 139, 143, 172, 335, 545, 554
MboI	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
MboII	GAAGA	2 cut(s)	384, 550
MflI	RGATCY	2 cut(s)	170, 552
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	3 cut(s)	180, 375, 621
MnlI	CCTC	5 cut(s)	50, 98, 224, 242, 377
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	1 cut(s)	157
MvnI	CGCG	3 cut(s)	324, 451, 597
MwoI	GCNNNNNNNGC	1 cut(s)	328
NdeII	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	5 cut(s)	8, 21, 217, 433, 491
NlaIV	GGNNCC	4 cut(s)	345, 478, 517, 591
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 217
PaeI	GCATGC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	438
Ple19I	CGATCG	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	345, 478, 517, 591
PspPI	GGNCC	2 cut(s)	274, 515
PsuI	RGATCY	2 cut(s)	170, 552
PvuI	CGATCG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	522
Sau3AI	GATC	7 cut(s)	59, 137, 141, 170, 333, 543, 552
Sau96I	GGNCC	2 cut(s)	274, 515
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	3 cut(s)	180, 375, 621
SsiI	CCGC	6 cut(s)	66, 331, 451, 465, 595, 631
SspMI	CTAG	3 cut(s)	72, 150, 611
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	4 cut(s)	140, 177, 409, 549
TasI	AATT	3 cut(s)	180, 375, 621
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	469
Vha464I	CTTAAG	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	2 cut(s)	180, 375
XceI	RCATGY	2 cut(s)	8, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	3 cut(s)	72, 150, 611
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.