AT2G47760

ALG3 protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19564795 .. 19568438
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47760.1

Sequence Viewer

Length: 1248 bp
ATGGCGGGCGCCTCATCACCGGCGAGTTTGAGAGCTTCTCGTAGCCGTCGGCTGGGGAAGGAGACGAATCGATCCGATCTATTCAAAAAACCTGCAGTTCCATTCGCATTCGCGCTAATTCTTGCTGATGCAATCCTAGTCGCACTTATTATCGCCTATGTTCCATACACGAAGATCGATTGGGATGCTTACATGTCACAGGTTAGTGGGTTTCTCGGGGGAGAGAGAGACTATGGGAACTTGAAAGGCGATACAGGGCCATTGGTTTATCCAGCAGGTTTCCTCTATGTTTACTCTGCAGTGCAGAACTTAACTGGAGGGGAAGTCTACCCTGCTCAGATTCTTTTTGGTGTTCTCTACATTGTCAATCTGGGGATCGTCTTGATCATCTACGTGAAGACTGATGTGGTGCCATGGTGGGCATTAAGTCTACTATGTTTATCCAAGAGGATACATTCAATCTTTGTTCTCCGTCTCTTTAATGATTGTTTTGCCATGACTCTCCTACATGCATCAATGGCTCTCTTTCTCTATCGTAAATGGCATCTAGGGATGCTTGTTTTCAGTGGAGCTGTTTCTGTAAAGATGAATGTACTTTTGTATGCTCCAACTTTGTTACTTCTGCTACTTAAGGCCATGAATATCATTGGAGTGGTGTCTGCTTTGGCTGGTGCAGCTCTTGTTCAGATACTCGTGGGACTGCCGTTTCTGATAACATATCCGGTTTCATACATAGCAAACGCCTTTGATCTTGGACGTGTTTTCATTCATTTCTGGTCTGTTAACTTCAAATTTGTTCCAGAACGAGTTTTTGTGTCCAAAGAATTTGCAGTATGCTTGCTCATTGCTCACCTTTTTCTCCTTGTGGCGTTCGCAAATTATAAGTGGTGCAAGCATGAAGGCGGGATTATAGGCTTCATGCGTTCTAGGCATTTCTTCTTGACACTTCCGTCTTCACTCTCGTTCAGTGATGTATCAGCCTCACGGATTATTACGAAAGAACATGTCGTCACGGCCATGTTTGTTGGGAATTTCATCGGCATTGTATTTGCTCGCTCTCTGCACTACCAGTTCTACTCATGGTACTTCTATTCGCTACCTTATCTACTATGGAGAACACCGTTTCCCACTTGGCTGCGCTTGATCATGTTCCTCGGCATTGAGCTCTGTTGGAATGTTTATCCATCAACACCGTCCTCCTCGGGTTTGCTATTGTGTCTACACTTGATCATTCTGCATAGAACATAG

Protein Analysis

415

Amino Acids

46.68

Weight (kDa)

9.54

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALG3 PF05208 38 - 401 3.1e-138 ALG3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AasI GACNNNNNNGTC 1 cut(s) 949
Acc36I ACCTGC 2 cut(s) 100, 266
AccB1I GGYRCC 2 cut(s) 8, 409
AccI GTMKAC 3 cut(s) 327, 430, 1219
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 5, 903
AclWI GGATC 2 cut(s) 66, 383
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 3 cut(s) 791, 824, 1030
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 594, 1085
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 3 cut(s) 192, 757, 1003
AgsI TTSAA 4 cut(s) 85, 244, 459, 790
AjiI CACGTC 1 cut(s) 758
AloI GAACNNNNNNTCC 2 cut(s) 1108, 1140
AluBI AGCT 4 cut(s) 35, 572, 677, 1165
AluI AGCT 4 cut(s) 35, 572, 677, 1165
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 3 cut(s) 56, 222, 479
AlwI GGATC 2 cut(s) 66, 383
Ama87I CYCGRG 2 cut(s) 215, 1201
AoxI GGCC 3 cut(s) 257, 633, 1014
ApeKI GCWGC 2 cut(s) 674, 1135
ApoI RAATTY 3 cut(s) 791, 824, 1030
AspLEI GCGC 3 cut(s) 11, 115, 1140
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 9, 842
AvaI CYCGRG 2 cut(s) 215, 1201
BanI GGYRCC 2 cut(s) 8, 409
BanII GRGCYC 1 cut(s) 1167
BauI CACGAG 1 cut(s) 692
BbsI GAAGAC 2 cut(s) 404, 945
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 2 cut(s) 686, 1122
BccI CCATC 1 cut(s) 1192
BceAI ACGGC 3 cut(s) 30, 688, 1029
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciVI GTATCC 1 cut(s) 444
BclI TGATCA 3 cut(s) 384, 1143, 1227
BcoDI GTCTC 3 cut(s) 56, 222, 479
BfaI CTAG 3 cut(s) 137, 548, 927
BfmI CTRYAG 2 cut(s) 93, 297
BfoI RGCGCY 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 629
BfuAI ACCTGC 2 cut(s) 100, 266
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 2 cut(s) 675, 1136
BlsI GCNGC 2 cut(s) 676, 1137
BmeT110I CYCGRG 2 cut(s) 215, 1201
BmgBI CACGTC 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 10, 411
BmsI GCATC 5 cut(s) 118, 175, 521, 543, 553
BpiI GAAGAC 2 cut(s) 404, 945
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpmI CTGGAG 1 cut(s) 336
Bsa29I ATCGAT 2 cut(s) 70, 177
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 413, 1153, 1200
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 319, 1069
Bse3DI GCAATG 1 cut(s) 843
BseCI ATCGAT 2 cut(s) 70, 177
BseDI CCNNGG 3 cut(s) 413, 1153, 1200
BseGI GGATG 2 cut(s) 190, 558
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 319, 1069
BseRI GAGGAG 1 cut(s) 1189
BseXI GCAGC 2 cut(s) 686, 1122
BseYI CCCAGC 1 cut(s) 52
BsgI GTGCAG 3 cut(s) 323, 693, 1046
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 259, 635, 1016
BshNI GGYRCC 2 cut(s) 8, 409
BshVI ATCGAT 2 cut(s) 70, 177
BsiHKAI GWGCWC 1 cut(s) 1167
BsiHKCI CYCGRG 2 cut(s) 215, 1201
BsiSI CCGG 2 cut(s) 20, 722
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 3 cut(s) 56, 222, 479
BsmBI CGTCTC 2 cut(s) 56, 479
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 3 cut(s) 259, 635, 1016
BsoBI CYCGRG 2 cut(s) 215, 1201
Bsp1286I GDGCHC 1 cut(s) 1167
Bsp143I GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
Bsp19I CCATGG 1 cut(s) 413
BspACI CCGC 2 cut(s) 5, 903
BspANI GGCC 3 cut(s) 259, 635, 1016
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 2 cut(s) 70, 177
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 10, 411
BspMAI CTGCAG 2 cut(s) 97, 301
BspMI ACCTGC 2 cut(s) 100, 266
BspPI GGATC 2 cut(s) 66, 383
BspT107I GGYRCC 2 cut(s) 8, 409
BspTI CTTAAG 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 319, 1069
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 413, 1153, 1200
BssMI GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 1122, 1194
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 4 cut(s) 7, 839, 893, 1054
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 413
BstF5I GGATG 2 cut(s) 190, 558
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 3 cut(s) 11, 115, 1140
BstKTI GATC 8 cut(s) 74, 79, 177, 378, 387, 751, 1146, 1230
BstMAI GTCTC 3 cut(s) 56, 222, 479
BstMBI GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
BstMWI GCNNNNNNNGC 3 cut(s) 518, 674, 928
BstNSI RCATGY 3 cut(s) 196, 512, 1007
BstSFI CTRYAG 2 cut(s) 93, 297
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 686, 1122
BstV2I GAAGAC 2 cut(s) 404, 945
Bsu15I ATCGAT 2 cut(s) 70, 177
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 259, 635, 1016
BsuTUI ATCGAT 2 cut(s) 70, 177
BtgI CCRYGG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 758
BtsCI GGATG 2 cut(s) 190, 558
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 306, 571, 973
BveI ACCTGC 2 cut(s) 100, 266
Cac8I GCNNGC 4 cut(s) 7, 839, 893, 1054
CfoI GCGC 3 cut(s) 11, 115, 1140
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 2 cut(s) 70, 177
Csp6I GTAC 2 cut(s) 593, 1084
CviQI GTAC 2 cut(s) 593, 1084
DdeI CTNAG 1 cut(s) 336
DinI GGCGCC 1 cut(s) 10
DpnI GATC 8 cut(s) 73, 78, 176, 377, 386, 750, 1145, 1229
DpnII GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
DrdI GACNNNNNNGTC 1 cut(s) 949
DseDI GACNNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 1014
Ecl136II GAGCTC 1 cut(s) 1165
Eco130I CCWWGG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 1167
Eco53kI GAGCTC 1 cut(s) 1165
Eco88I CYCGRG 2 cut(s) 215, 1201
EcoICRI GAGCTC 1 cut(s) 1165
EcoT14I CCWWGG 1 cut(s) 413
EcoT22I ATGCAT 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 1167
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 2 cut(s) 56, 479
FaqI GGGAC 1 cut(s) 711
FauI CCCGC 1 cut(s) 896
FbaI TGATCA 3 cut(s) 384, 1143, 1227
FblI GTMKAC 3 cut(s) 327, 430, 1219
Fnu4HI GCNGC 2 cut(s) 675, 1136
FokI GGATG 2 cut(s) 197, 565
FriOI GRGCYC 1 cut(s) 1167
Fsp4HI GCNGC 2 cut(s) 675, 1136
FspBI CTAG 3 cut(s) 137, 548, 927
GlaI GCGC 3 cut(s) 10, 114, 1139
GluI GCNGC 2 cut(s) 675, 1136
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 3 cut(s) 259, 635, 1016
HapII CCGG 2 cut(s) 20, 722
HhaI GCGC 3 cut(s) 11, 115, 1140
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 3 cut(s) 9, 113, 1138
HinP1I GCGC 3 cut(s) 9, 113, 1138
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HinfI GANTC 3 cut(s) 67, 340, 499
HpaI GTTAAC 1 cut(s) 784
HpaII CCGG 2 cut(s) 20, 722
HphI GGTGA 2 cut(s) 9, 842
Hpy166II GTNNAC 5 cut(s) 292, 328, 431, 784, 1220
Hpy188I TCNGA 4 cut(s) 76, 339, 687, 711
Hpy188III TCNNGA 3 cut(s) 382, 800, 940
Hpy8I GTNNAC 5 cut(s) 292, 328, 431, 784, 1220
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 52, 893
HpyCH4III ACNGT 2 cut(s) 1122, 1194
HpyCH4IV ACGT 2 cut(s) 393, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 674, 928
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 2 cut(s) 393, 757
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 3 cut(s) 9, 113, 1138
KasI GGCGCC 1 cut(s) 8
Ksp22I TGATCA 3 cut(s) 384, 1143, 1227
KspAI GTTAAC 1 cut(s) 784
Kzo9I GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
LmnI GCTCC 2 cut(s) 569, 610
Lsp1109I GCAGC 2 cut(s) 686, 1122
LweI GCATC 5 cut(s) 118, 175, 521, 543, 553
MaeI CTAG 3 cut(s) 137, 548, 927
MaeII ACGT 2 cut(s) 393, 757
MaeIII GTNAC 3 cut(s) 195, 615, 1009
MalI GATC 8 cut(s) 73, 78, 176, 377, 386, 750, 1145, 1229
MboI GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
MboII GAAGA 4 cut(s) 184, 409, 928, 945
MhlI GDGCHC 1 cut(s) 1167
MluCI AATT 5 cut(s) 117, 791, 824, 877, 1030
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 2 cut(s) 632, 1151
MnlI CCTC 8 cut(s) 22, 293, 311, 441, 991, 1163, 1207, 1210
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 5 cut(s) 311, 425, 480, 630, 783
MslI CAYNNNNRTG 3 cut(s) 392, 650, 1016
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 2 cut(s) 20, 722
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 518, 674, 928
NarI GGCGCC 1 cut(s) 9
NcoI CCATGG 1 cut(s) 413
NdeII GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
NlaIV GGNNCC 2 cut(s) 10, 411
NmeAIII GCCGAG 1 cut(s) 1134
NmuCI GTSAC 2 cut(s) 195, 1009
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 3 cut(s) 196, 512, 1007
PciI ACATGT 2 cut(s) 192, 1003
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 67, 340
PkrI GCNGC 2 cut(s) 676, 1137
PleI GAGTC 1 cut(s) 493
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 394
PscI ACATGT 2 cut(s) 192, 1003
PsiI TTATAA 1 cut(s) 882
Psp124BI GAGCTC 1 cut(s) 1167
PspFI CCCAGC 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 10, 411
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 2 cut(s) 97, 301
RsaI GTAC 2 cut(s) 594, 1085
RsaNI GTAC 2 cut(s) 593, 1084
RseI CAYNNNNRTG 3 cut(s) 392, 650, 1016
SacI GAGCTC 1 cut(s) 1167
SaqAI TTAA 5 cut(s) 311, 425, 480, 630, 783
SatI GCNGC 2 cut(s) 675, 1136
Sau3AI GATC 8 cut(s) 71, 76, 174, 375, 384, 748, 1143, 1227
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 1167
SfaNI GCATC 5 cut(s) 118, 175, 521, 543, 553
SfcI CTRYAG 2 cut(s) 93, 297
SfoI GGCGCC 1 cut(s) 10
SgrAI CRCCGGYG 1 cut(s) 19
SmiMI CAYNNNNRTG 3 cut(s) 392, 650, 1016
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 5 cut(s) 117, 791, 824, 877, 1030
SsiI CCGC 2 cut(s) 5, 903
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 3 cut(s) 137, 548, 927
SstI GAGCTC 1 cut(s) 1167
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 2 cut(s) 1122, 1194
TaiI ACGT 2 cut(s) 396, 760
TaqI TCGA 2 cut(s) 70, 177
TasI AATT 5 cut(s) 117, 791, 824, 877, 1030
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 2 cut(s) 67, 340
Tru1I TTAA 5 cut(s) 311, 425, 480, 630, 783
Tru9I TTAA 5 cut(s) 311, 425, 480, 630, 783
TscAI CASTG 3 cut(s) 306, 571, 973
TseFI GTSAC 2 cut(s) 195, 1009
TseI GCWGC 2 cut(s) 674, 1135
Tsp45I GTSAC 2 cut(s) 195, 1009
TspDTI ATGAA 8 cut(s) 602, 653, 717, 754, 758, 907, 912, 1024
TspGWI ACGGA 3 cut(s) 461, 939, 1000
TspRI CASTG 3 cut(s) 306, 571, 973
Vha464I CTTAAG 1 cut(s) 629
XapI RAATTY 3 cut(s) 791, 824, 1030
XceI RCATGY 3 cut(s) 196, 512, 1007
XmiI GTMKAC 3 cut(s) 327, 430, 1219
XspI CTAG 3 cut(s) 137, 548, 927
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.