Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

36502097 .. 36503758

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1285200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGGGCAGATCGACGGCGGCGACGCGGCCGAAACCCCCGCAGCGGCGGCGGATTTCCAACTCCTCGAACCCCAAATTTCTCAAAGACCCTAAATTACTCTTCTCTTCTGCCTTGCTCCTTTGCGATGCGATCCTAGTCGCCCTTATCATCGCCTATGTCCCCTATACGAAGATAGATTGGGACGCGTACATGTCACAAGTTAGTGGGTTTCTTGGTGGAGAGAGAGACTATGCTAACTTAAAAGGCGACACAAGGCCGCTGGTTTATCCTGCTGGTTTCCTCTACTTTTATTCTGCTATTCAGTATGTTACAGGGGGCCAAGTTCATCCAGCTCAGATTTTGTTCGGGATTTTGTACATTATAAACTTGGGGATCATATTGTTCATCTATGGGAAGACAGATGTGGTTCCATGGTGGGCTTTCATCTTGCTTTGTCTATCGAAAAGGGTTCATTCTATTTTTGCGCTTCGTCTTTTTAATGACTGTTTTGCCATGATGCTCCTGTATGCTTCGTTGGCCTCACTTCTTTACCAAAAGTGGCATCTGGGACTGATCATTTTCAGTGGAGCTGTTTCCATAAAGATGAATGTGCTTCTCTATGCTCCACCTCTACTACTCCTCATGTTAAAGGCTATGAGTATCGGTGGAGTGATATCAGCTTTATCTGGTGCAGCGCTTGTACAGAATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

233

Amino Acids

25.69

Weight (kDa)

9.58

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG3	PF05208	38 - 229	1e-70	ALG3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccII	CGCG	2 cut(s)	28, 188
AciI	CCGC	8 cut(s)	5, 20, 28, 41, 46, 49, 52, 260
AclWI	GGATC	2 cut(s)	127, 383
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	77, 688
AfaI	GTAC	3 cut(s)	191, 359, 684
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	2 cut(s)	186, 192
AluBI	AGCT	3 cut(s)	335, 572, 662
AluI	AGCT	3 cut(s)	335, 572, 662
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	127, 383
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	4 cut(s)	29, 257, 319, 519
ApeKI	GCWGC	2 cut(s)	43, 674
ApoI	RAATTY	2 cut(s)	77, 688
AspLEI	GCGC	2 cut(s)	469, 679
AspS9I	GGNCC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	55, 686
BceAI	ACGGC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	680
BisI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
BlsI	GCNGC	7 cut(s)	22, 30, 45, 48, 51, 261, 676
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	320, 411
BmsI	GCATC	3 cut(s)	118, 489, 553
BpiI	GAAGAC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	2 cut(s)	55, 611
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	55, 686
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	2 cut(s)	28, 188
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	31, 259, 321, 521
BsiEI	CGRYCG	1 cut(s)	32
BslFI	GGGAC	3 cut(s)	146, 197, 564
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	3 cut(s)	146, 197, 564
BsnI	GGCC	4 cut(s)	31, 259, 321, 521
Bsp1407I	TGTACA	2 cut(s)	357, 682
Bsp143I	GATC	4 cut(s)	11, 132, 375, 555
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	8 cut(s)	5, 20, 28, 41, 46, 49, 52, 260
BspANI	GGCC	4 cut(s)	31, 259, 321, 521
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	2 cut(s)	28, 188
BspLI	GGNNCC	2 cut(s)	320, 411
BspPI	GGATC	2 cut(s)	127, 383
BsrGI	TGTACA	2 cut(s)	357, 682
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	4 cut(s)	11, 132, 375, 555
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	107, 112
BstAUI	TGTACA	2 cut(s)	357, 682
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	28, 188
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	469, 679
BstKTI	GATC	4 cut(s)	14, 135, 378, 558
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	4 cut(s)	11, 132, 375, 555
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 518
BstNSI	RCATGY	1 cut(s)	196
BstUI	CGCG	2 cut(s)	28, 188
BstV1I	GCAGC	2 cut(s)	55, 686
BstV2I	GAAGAC	1 cut(s)	404
BstZI	CGGCCG	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	31, 259, 321, 521
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	2 cut(s)	136, 141
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	469, 679
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	2 cut(s)	34, 194
Csp6I	GTAC	3 cut(s)	190, 358, 683
CviAII	CATG	4 cut(s)	193, 414, 496, 625
CviJI	RGCY	9 cut(s)	31, 259, 321, 335, 422, 521, 572, 635, 662
CviKI_1	RGCY	9 cut(s)	31, 259, 321, 335, 422, 521, 572, 635, 662
CviQI	GTAC	3 cut(s)	190, 358, 683
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	13, 134, 377, 557
DpnII	GATC	4 cut(s)	11, 132, 375, 555
EaeI	YGGCCR	1 cut(s)	29
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	107, 112
EarI	CTCTTC	2 cut(s)	107, 112
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	678
Eco52I	CGGCCG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	196, 417, 499, 628
FaqI	GGGAC	3 cut(s)	146, 197, 564
FatI	CATG	4 cut(s)	192, 413, 495, 624
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	468, 678
GluI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	4 cut(s)	31, 259, 321, 521
HgaI	GACGC	2 cut(s)	34, 194
HhaI	GCGC	2 cut(s)	469, 679
Hin1II	CATG	4 cut(s)	196, 417, 499, 628
Hin6I	GCGC	2 cut(s)	467, 677
HinP1I	GCGC	2 cut(s)	467, 677
Hpy188I	TCNGA	2 cut(s)	339, 694
Hpy188III	TCNNGA	1 cut(s)	349
Hpy99I	CGWCG	2 cut(s)	19, 28
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	1 cut(s)	674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 518
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	196, 417, 499, 628
HspAI	GCGC	2 cut(s)	467, 677
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	11, 132, 375, 555
LmnI	GCTCC	4 cut(s)	123, 507, 569, 610
LpnPI	CCDG	8 cut(s)	248, 261, 285, 300, 345, 518, 533, 654
Lsp1109I	GCAGC	2 cut(s)	55, 686
LweI	GCATC	3 cut(s)	118, 489, 553
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	195, 310
MalI	GATC	4 cut(s)	13, 134, 377, 557
MboI	GATC	4 cut(s)	11, 132, 375, 555
MboII	GAAGA	4 cut(s)	94, 99, 184, 409
MluCI	AATT	3 cut(s)	77, 95, 688
MluI	ACGCGT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	76, 293, 532, 621, 632
MseI	TTAA	3 cut(s)	242, 480, 629
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	46, 262
MvnI	CGCG	2 cut(s)	28, 188
MwoI	GCNNNNNNNGC	2 cut(s)	49, 518
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	4 cut(s)	11, 132, 375, 555
NlaIII	CATG	4 cut(s)	196, 417, 499, 628
NlaIV	GGNNCC	2 cut(s)	320, 411
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	22, 30, 45, 48, 51, 261, 676
PscI	ACATGT	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	320, 411
PspPI	GGNCC	1 cut(s)	319
RsaI	GTAC	3 cut(s)	191, 359, 684
RsaNI	GTAC	3 cut(s)	190, 358, 683
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	242, 480, 629
SatI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
Sau3AI	GATC	4 cut(s)	11, 132, 375, 555
Sau96I	GGNCC	1 cut(s)	319
SetI	ASST	4 cut(s)	337, 574, 613, 664
SfaNI	GCATC	3 cut(s)	118, 489, 553
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	77, 95, 688
SsiI	CCGC	8 cut(s)	5, 20, 28, 41, 46, 49, 52, 260
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	14, 68, 443
TasI	AATT	3 cut(s)	77, 95, 688
TatI	WGTACW	2 cut(s)	357, 682
TauI	GCSGC	5 cut(s)	23, 31, 49, 52, 262
Tru1I	TTAA	3 cut(s)	242, 480, 629
Tru9I	TTAA	3 cut(s)	242, 480, 629
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	2 cut(s)	43, 674
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	5 cut(s)	317, 376, 415, 443, 602
TspRI	CASTG	1 cut(s)	571
XapI	RAATTY	2 cut(s)	77, 688
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.