Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

21947937 .. 21950987

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCGGTCAAATCGGCGAGGCGGGTGAAGCCCTCGCAGCAGCGGAGTTCTAAGGCTTCAAATATCAAGCTATTCAAAAATCCTAAGGTAGCTTTTGCTTTCGCTTTGCTCCTCTGCGATGCGGTCCTCGTCGCCCTCATCATTGCATATTGTTTGGTTTCAGATACGAAGATAGATTGGGACGCTTACATGTCACAAGTTAGTGGGTTTCTTGATGGAGAAAGAGATTATGGTAACTTAAAAGGCGACACAGGGCCACTGGTCTATCCTGCTGGTTTCCTATACTTTTATTCTGCTGTTCGGTATGTTACAGGAGGCGAAGTTTATCCAGCTCAGATTTTGTTCGGGGTTTTGTACATTATAAACTTGGGAATCATATTATTCATCTATGGGAAGACAGATGTGGTTCCGTGGTGGGCTATGAGCTTGCTTTGCCTATCAAAAAGAATGCATTCTATTTTTGTGCTCCGTCTTTTTAATGACTGTTTGGCCATGATGCTCCTGCATGCTTCGTTGGTATCACTTCTTCACCAAAGGTGGCATCTAGGGCTGATCATTTTCAGTGGAGCTGTTTCGGTTAAGATGAATGTGCTCCTCTATGCTCCACTTCTACTACTCCTTATGTTAAAGGCTATGAATATAGGTGGAGTGATATCAGCTTTATCTGGTGCAGCGCTGGTCCAGATACTTTTGGGAATACCTTTCATCATGTCTCATCCATTTGCATACATCTCAAGAGCGTTTAATCTTGGGCGTGTCTTTATCCACTTCTGGTCTGTCAATTTCAAGTTCGTTCCTGAGCCAATATTTGTTTCAAAGGCATTTGCAATCTCTTTGCTGATTGCGCACCTTGGTTTACTTACAGCTTTTGCTCATTATAGATGGTGCATGCATGAAGGTGGACTTTTCAAATTTTTGTACTCTAGACTTGATCCTATAAAACTCAAACTTGCTCTTACAAGTTCATTCTCTTTGAAGAAGTCCTACAATAGCCATTCATCCATCAAGGTTCTTAGAAAAGAATATATTGTGACAACGATGTTTGTCGGGAATTTCATCGGCATCCTATGTGCTCGATCGTTGCATTATCAGTTCTACTCTTGGTATTTCCATAGCTTACCTTATCTGTTGTGGAAAACGCCTTTTCCTACATTACTACGTGTAATGTTGTTTATCGGGGTGGAGTTCTGCTGGAATGTGTATCCTTCAAGCCTTTACTCATCGGCATTGCTTCTTTGCCTCCACCTAGTAATACTGGTTGGTCTATGGTCTGCCCCACCTGAATATCCTTATGTGGACAACAAACCATTGACCGAAGACAAAGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

444

Amino Acids

50.15

Weight (kDa)

9.5

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
Acc16I	TGCGCA	1 cut(s)	846
AciI	CCGC	4 cut(s)	5, 22, 43, 122
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	911, 1051
AfaI	GTAC	2 cut(s)	356, 920
AfeI	AGCGCT	1 cut(s)	675
AflIII	ACRYGT	2 cut(s)	189, 1159
AgsI	TTSAA	7 cut(s)	60, 76, 787, 816, 910, 976, 1209
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	8 cut(s)	70, 92, 332, 426, 569, 659, 866, 1116
AluI	AGCT	8 cut(s)	70, 92, 332, 426, 569, 659, 866, 1116
Alw21I	GWGCWC	3 cut(s)	468, 594, 1075
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	926
Aor51HI	AGCGCT	1 cut(s)	675
AoxI	GGCC	2 cut(s)	254, 489
ApeKI	GCWGC	3 cut(s)	37, 40, 671
ApoI	RAATTY	2 cut(s)	911, 1051
Asp700I	GAANNNNTTC	1 cut(s)	451
AspLEI	GCGC	2 cut(s)	676, 847
AspS9I	GGNCC	3 cut(s)	124, 254, 679
AsuHPI	GGTGA	2 cut(s)	37, 521
AvaII	GGWCC	2 cut(s)	124, 679
AxyI	CCTNAGG	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	491
BarI	GAAGNNNNNNTAC	4 cut(s)	510, 542, 968, 1000
BbsI	GAAGAC	2 cut(s)	401, 1323
Bbv12I	GWGCWC	3 cut(s)	468, 594, 1075
BbvI	GCAGC	3 cut(s)	49, 52, 683
BccI	CCATC	3 cut(s)	209, 876, 1010
BciVI	GTATCC	1 cut(s)	1212
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	3 cut(s)	545, 924, 1247
BfoI	RGCGCY	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	1212
BisI	GCNGC	3 cut(s)	38, 41, 672
BlsI	GCNGC	3 cut(s)	39, 42, 673
Bme18I	GGWCC	2 cut(s)	124, 679
BmgT120I	GGNCC	3 cut(s)	124, 254, 679
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	4 cut(s)	109, 486, 550, 1071
BpiI	GAAGAC	2 cut(s)	401, 1323
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	718
BsaAI	YACGTR	1 cut(s)	1160
BsaJI	CCNNGG	2 cut(s)	410, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bse1I	ACTGG	2 cut(s)	264, 1260
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	2 cut(s)	141, 1226
BseDI	CCNNGG	2 cut(s)	410, 850
BseGI	GGATG	3 cut(s)	715, 998, 1062
BseMI	GCAATG	2 cut(s)	141, 1226
BseMII	CTCAG	2 cut(s)	347, 789
BseNI	ACTGG	2 cut(s)	264, 1260
BseRI	GAGGAG	2 cut(s)	101, 584
BseXI	GCAGC	3 cut(s)	49, 52, 683
BsgI	GTGCAG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	1079
BshFI	GGCC	2 cut(s)	256, 491
BsiEI	CGRYCG	1 cut(s)	1079
BsiHKAI	GWGCWC	3 cut(s)	468, 594, 1075
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	2 cut(s)	451, 453
BsnI	GGCC	2 cut(s)	256, 491
Bsp1286I	GDGCHC	3 cut(s)	468, 594, 1075
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	552, 931, 1076
BspACI	CCGC	4 cut(s)	5, 22, 43, 122
BspANI	GGCC	2 cut(s)	256, 491
BspCNI	CTCAG	2 cut(s)	346, 790
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	926
BsrDI	GCAATG	2 cut(s)	141, 1226
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	264, 1260
BssECI	CCNNGG	2 cut(s)	410, 850
BssMI	GATC	3 cut(s)	552, 931, 1076
BssT1I	CCWWGG	1 cut(s)	850
Bst4CI	ACNGT	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	1160
BstC8I	GCNNGC	3 cut(s)	428, 507, 890
BstDEI	CTNAG	5 cut(s)	51, 84, 333, 798, 1013
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	715, 998, 1062
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	2 cut(s)	676, 847
BstKTI	GATC	3 cut(s)	555, 934, 1079
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	3 cut(s)	552, 931, 1076
BstMCI	CGRYCG	1 cut(s)	1079
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 37, 432, 547, 844
BstNSI	RCATGY	3 cut(s)	193, 509, 892
BstV1I	GCAGC	3 cut(s)	49, 52, 683
BstV2I	GAAGAC	2 cut(s)	401, 1323
Bsu36I	CCTNAGG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	1212
BsuRI	GGCC	2 cut(s)	256, 491
BtgI	CCRYGG	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	715, 998, 1062
BtsIMutI	CAGTG	2 cut(s)	257, 568
Cac8I	GCNNGC	3 cut(s)	428, 507, 890
CfoI	GCGC	2 cut(s)	676, 847
Cfr13I	GGNCC	3 cut(s)	124, 254, 679
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	355, 919
CviAII	CATG	6 cut(s)	190, 493, 506, 709, 889, 893
CviQI	GTAC	2 cut(s)	355, 919
DdeI	CTNAG	5 cut(s)	51, 84, 333, 798, 1013
DpnI	GATC	3 cut(s)	554, 933, 1078
DpnII	GATC	3 cut(s)	552, 931, 1076
EaeI	YGGCCR	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	850
Eco32I	GATATC	1 cut(s)	654
Eco47I	GGWCC	2 cut(s)	124, 679
Eco47III	AGCGCT	1 cut(s)	675
Eco81I	CCTNAGG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	850
EcoT22I	ATGCAT	2 cut(s)	453, 894
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	6 cut(s)	193, 496, 509, 712, 892, 896
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	6 cut(s)	189, 492, 505, 708, 888, 892
FauI	CCCGC	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	38, 41, 672
FokI	GGATG	3 cut(s)	702, 985, 1049
Fsp4HI	GCNGC	3 cut(s)	38, 41, 672
FspBI	CTAG	3 cut(s)	545, 924, 1247
FspI	TGCGCA	1 cut(s)	846
GlaI	GCGC	2 cut(s)	675, 846
GluI	GCNGC	3 cut(s)	38, 41, 672
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	256, 491
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	676, 847
Hin1II	CATG	6 cut(s)	193, 496, 509, 712, 892, 896
Hin6I	GCGC	2 cut(s)	674, 845
HinP1I	GCGC	2 cut(s)	674, 845
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	2 cut(s)	37, 521
Hpy166II	GTNNAC	3 cut(s)	857, 902, 1297
Hpy188I	TCNGA	2 cut(s)	163, 336
Hpy188III	TCNNGA	6 cut(s)	212, 682, 735, 797, 924, 1048
Hpy8I	GTNNAC	3 cut(s)	857, 902, 1297
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	890, 1215
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	1159
HpyCH4V	TGCA	9 cut(s)	146, 451, 505, 671, 725, 827, 888, 892, 1084
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 37, 432, 547, 844
HpyF3I	CTNAG	5 cut(s)	51, 84, 333, 798, 1013
HpySE526I	ACGT	1 cut(s)	1159
Hsp92II	CATG	6 cut(s)	193, 496, 509, 712, 892, 896
HspAI	GCGC	2 cut(s)	674, 845
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	552, 931, 1076
LmnI	GCTCC	6 cut(s)	114, 471, 504, 566, 597, 607
Lsp1109I	GCAGC	3 cut(s)	49, 52, 683
LweI	GCATC	4 cut(s)	109, 486, 550, 1071
MaeI	CTAG	3 cut(s)	545, 924, 1247
MaeII	ACGT	1 cut(s)	1159
MaeIII	GTNAC	4 cut(s)	192, 233, 307, 1030
MalI	GATC	3 cut(s)	554, 933, 1078
MboI	GATC	3 cut(s)	552, 931, 1076
MboII	GAAGA	5 cut(s)	181, 406, 518, 988, 1328
MhlI	GDGCHC	3 cut(s)	468, 594, 1075
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	3 cut(s)	781, 911, 1051
MluNI	TGGCCA	1 cut(s)	491
MnlI	CCTC	8 cut(s)	12, 43, 122, 137, 146, 308, 605, 1250
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	2 cut(s)	453, 894
MroXI	GAANNNNTTC	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	5 cut(s)	239, 477, 579, 626, 744
MslI	CAYNNNNRTG	1 cut(s)	897
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	43
Mva1269I	GAATGC	2 cut(s)	451, 453
MwoI	GCNNNNNNNGC	5 cut(s)	28, 37, 432, 547, 844
NdeII	GATC	3 cut(s)	552, 931, 1076
NlaIII	CATG	6 cut(s)	193, 496, 509, 712, 892, 896
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	192, 1030
NsbI	TGCGCA	1 cut(s)	846
NsiI	ATGCAT	2 cut(s)	453, 894
NspI	RCATGY	3 cut(s)	193, 509, 892
PaeI	GCATGC	2 cut(s)	509, 892
PciI	ACATGT	1 cut(s)	189
PctI	GAATGC	2 cut(s)	451, 453
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	39, 42, 673
Ple19I	CGATCG	1 cut(s)	1079
Ppu21I	YACGTR	1 cut(s)	1160
PscI	ACATGT	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	124, 254, 679
PvuI	CGATCG	1 cut(s)	1079
RsaI	GTAC	2 cut(s)	356, 920
RsaNI	GTAC	2 cut(s)	355, 919
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	5 cut(s)	239, 477, 579, 626, 744
SatI	GCNGC	3 cut(s)	38, 41, 672
Sau3AI	GATC	3 cut(s)	552, 931, 1076
Sau96I	GGNCC	3 cut(s)	124, 254, 679
SduI	GDGCHC	3 cut(s)	468, 594, 1075
SfaNI	GCATC	4 cut(s)	109, 486, 550, 1071
SinI	GGWCC	2 cut(s)	124, 679
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SphI	GCATGC	2 cut(s)	509, 892
Sse9I	AATT	3 cut(s)	781, 911, 1051
SsiI	CCGC	4 cut(s)	5, 22, 43, 122
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	3 cut(s)	545, 924, 1247
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	1162
TaqI	TCGA	1 cut(s)	1075
TaqII	GACCGA	1 cut(s)	1328
TasI	AATT	3 cut(s)	781, 911, 1051
TatI	WGTACW	2 cut(s)	354, 918
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	5 cut(s)	239, 477, 579, 626, 744
Tru9I	TTAA	5 cut(s)	239, 477, 579, 626, 744
TscAI	CASTG	2 cut(s)	264, 568
TseFI	GTSAC	2 cut(s)	192, 1030
TseI	GCWGC	3 cut(s)	37, 40, 671
Tsp45I	GTSAC	2 cut(s)	192, 1030
TspDTI	ATGAA	8 cut(s)	373, 599, 650, 694, 909, 954, 987, 1045
TspGWI	ACGGA	2 cut(s)	399, 458
TspRI	CASTG	2 cut(s)	264, 568
VpaK11BI	GGWCC	2 cut(s)	124, 679
XapI	RAATTY	2 cut(s)	911, 1051
XbaI	TCTAGA	1 cut(s)	923
XceI	RCATGY	3 cut(s)	193, 509, 892
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	3 cut(s)	545, 924, 1247
Zsp2I	ATGCAT	2 cut(s)	453, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.