RchiOBHm_Chr6g0293561
NAC Family

Dol-P-Man Man(5)GlcNAc(2)-PP-Dol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006111
Physical Location & Seq
Reverse (-)
56200558 .. 56204283
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26341

Sequence Viewer

Length: 1314 bp
ATGAGCAATTCAACCATGGCGGTCAAACCGGCGCGGCGGGCGAAATCGTCGGAGCGGCACCAAATTTCCAAGCCCTGGATCCCCACACTGTTCCAAAACCCTAAGGTAGCCTCCGCCTCCGCTTTGCTCGTCTTCGATGCGGTCCTCACCGCCCTTATCATTGCCTACGTCCCTTATACGAAGATCGATTGGGACGCGTACATGTCTCAGGTCAATGGGTTTCTTGGTGGAGAAAGAGACTATAGTAACTTGAAAGGAGACACAGGGCCACTGGTGTATCCTGCTGGTTTTTTATATGCTTATTCTGCTATTCAGTATGTTACAGGAAGCCAAGTTCATCCAGCTCAGATTTTGTTTGGGGTTCTGTACACTATAAACTTGGGAATCATGTTTTACATCTATGTGAAGACTGATGTGGTTCCATGGTGGGCTCTTGCGTTGCTTTGTCTATCGAAAAGAGTGCATTCTATTTTTGTGCTCCGACTTTTTAATGACTGTTTGGCCATGTTGCTACTGCATGCTTCATTAGCCTCATTTCTTCACCAAAGGTGGCATCTTGGATTGATCATTTTCAGTGGTGCTGTTTCGATAAAGATGAATGTGCTCCTCTATGCTCCACCTCTTCTACTCCTCATGTTAAAGGCTATGGATATCAGTGGAGTGATATCAGCTTTGTTTGGTGCAGCTCTTGTCCAGATACTGCTGGGGTTACCTTTCATCATGTCTCATCCATTTGCATACATCTCAGGAGCCTTTAATCTTGGCCGTGTATTCATCCACTTCTGGTCTGTTAATTTCAAGTTCCTTCCTGAGTCAATATTCGTCTCCAAGGCATTTGCGATCTCTTTGCTGGTTGTACACCTTGTTTTACTTGCAGCTTTTGCTCACTATCGATGGTGCAAGCATGAAGGAGGAGTTTTCAAATTTTTGTATTCTAGACTTGTTTCTATAAAACTCAAATTTTCTCTAACAAATACCCATTCCTACAAGGCTCTTAAGAGAGAACATATTCTGACAACTATGTTCGTTGGAAATTTCATCGGCATTCTATGTGCCCGATCACTGCATTATCAATTCTACTCTTGGTATTTCCACACATTACCTTATTTATTGTGGAAAACACCTTTTCCTTTGTTTCTACGGGTAATATTGTTTACTGGGGTGGAGCTTTGCTGGAATGTGTATCCTTCCAACCTTTACTCATCAGCATTGCTTCTTGGTCTCCACTTAGTAATACTATTTGGTCTGTGGTCTGCCCCATCTGAATATCCTTACGTGGACAAGAAAGTATCGACTGAAGACAAACACAAATGA

Protein Analysis

437

Amino Acids

49.54

Weight (kDa)

9.58

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALG3 PF05208 41 - 402 2.3e-137 ALG3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 55
AccII CGCG 2 cut(s) 34, 197
AciI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
AclWI GGATC 2 cut(s) 73, 86
AcoI YGGCCR 2 cut(s) 501, 763
AcsI RAATTY 4 cut(s) 63, 923, 959, 1033
AfaI GTAC 3 cut(s) 200, 368, 858
AfiI CCNNNNNNNGG 1 cut(s) 75
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 2 cut(s) 195, 201
AgsI TTSAA 4 cut(s) 12, 253, 799, 922
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 5 cut(s) 344, 671, 686, 878, 1168
AluI AGCT 5 cut(s) 344, 671, 686, 878, 1168
Alw21I GWGCWC 2 cut(s) 480, 606
Alw26I GTCTC 6 cut(s) 210, 231, 252, 729, 829, 1226
AlwI GGATC 2 cut(s) 73, 86
AlwNI CAGNNNCTG 1 cut(s) 700
AoxI GGCC 3 cut(s) 266, 501, 763
ApeKI GCWGC 2 cut(s) 683, 875
ApoI RAATTY 4 cut(s) 63, 923, 959, 1033
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 142, 266
AsuHPI GGTGA 2 cut(s) 139, 533
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 1057
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BalI TGGCCA 1 cut(s) 503
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 433
BbsI GAAGAC 3 cut(s) 124, 413, 1305
Bbv12I GWGCWC 2 cut(s) 480, 606
BbvI GCAGC 2 cut(s) 695, 887
BccI CCATC 2 cut(s) 888, 1267
BceAI ACGGC 1 cut(s) 750
BcgI CGANNNNNNTGC 4 cut(s) 442, 476, 829, 863
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 2 cut(s) 288, 1194
BclI TGATCA 1 cut(s) 564
BcoDI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 1226
BfaI CTAG 1 cut(s) 936
BfmI CTRYAG 1 cut(s) 241
BfrI CTTAAG 1 cut(s) 995
BfuI GTATCC 2 cut(s) 288, 1194
BisI GCNGC 4 cut(s) 35, 56, 684, 876
BlsI GCNGC 4 cut(s) 36, 57, 685, 877
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 266
BmiI GGNNCC 4 cut(s) 59, 80, 420, 751
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 1167
BmsI GCATC 2 cut(s) 127, 562
BmuI ACTGGG 1 cut(s) 1167
BpiI GAAGAC 3 cut(s) 124, 413, 1305
Bsa29I ATCGAT 2 cut(s) 186, 892
BsaAI YACGTR 1 cut(s) 1276
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 4 cut(s) 15, 74, 422, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 276, 1162
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 159, 1208
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 2 cut(s) 186, 892
BseDI CCNNGG 4 cut(s) 15, 74, 422, 828
BseGI GGATG 3 cut(s) 337, 727, 774
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 2 cut(s) 159, 1208
BseMII CTCAG 4 cut(s) 221, 359, 759, 801
BseNI ACTGG 2 cut(s) 276, 1162
BseRI GAGGAG 3 cut(s) 596, 620, 927
BseSI GKGCMC 1 cut(s) 1057
BseXI GCAGC 2 cut(s) 695, 887
BseYI CCCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 2 cut(s) 34, 197
BshFI GGCC 3 cut(s) 268, 503, 765
BshNI GGYRCC 1 cut(s) 57
BshVI ATCGAT 2 cut(s) 186, 892
BsiHKAI GWGCWC 2 cut(s) 480, 606
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 155, 206
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 1226
BsmBI CGTCTC 1 cut(s) 829
BsmFI GGGAC 2 cut(s) 155, 206
BsmI GAATGC 2 cut(s) 463, 1044
BsnI GGCC 3 cut(s) 268, 503, 765
Bso31I GGTCTC 1 cut(s) 1226
Bsp1286I GDGCHC 4 cut(s) 433, 480, 606, 1057
Bsp1407I TGTACA 2 cut(s) 366, 856
Bsp143I GATC 5 cut(s) 78, 183, 564, 840, 1058
Bsp19I CCATGG 2 cut(s) 15, 422
BspACI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
BspANI GGCC 3 cut(s) 268, 503, 765
BspCNI CTCAG 4 cut(s) 220, 358, 758, 802
BspDI ATCGAT 2 cut(s) 186, 892
BspFNI CGCG 2 cut(s) 34, 197
BspLI GGNNCC 4 cut(s) 59, 80, 420, 751
BspPI GGATC 2 cut(s) 73, 86
BspT107I GGYRCC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 1226
BsrBI CCGCTC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 159, 1208
BsrFI RCCGGY 1 cut(s) 28
BsrGI TGTACA 2 cut(s) 366, 856
BsrI ACTGG 2 cut(s) 276, 1162
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 15, 74, 422, 828
BssMI GATC 5 cut(s) 78, 183, 564, 840, 1058
BssT1I CCWWGG 3 cut(s) 15, 422, 828
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 90, 497
Bst6I CTCTTC 1 cut(s) 627
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 2 cut(s) 366, 856
BstBAI YACGTR 1 cut(s) 1276
BstC8I GCNNGC 3 cut(s) 39, 519, 902
BstDEI CTNAG 6 cut(s) 102, 207, 345, 745, 810, 1228
BstDSI CCRYGG 2 cut(s) 15, 422
BstEII GGTNACC 1 cut(s) 708
BstF5I GGATG 3 cut(s) 337, 727, 774
BstFNI CGCG 2 cut(s) 34, 197
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 5 cut(s) 81, 186, 567, 843, 1061
BstMAI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 1226
BstMBI GATC 5 cut(s) 78, 183, 564, 840, 1058
BstMWI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 2 cut(s) 205, 521
BstPI GGTNACC 1 cut(s) 708
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 1057
BstUI CGCG 2 cut(s) 34, 197
BstV1I GCAGC 2 cut(s) 695, 887
BstV2I GAAGAC 3 cut(s) 124, 413, 1305
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 2 cut(s) 186, 892
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 2 cut(s) 288, 1194
BsuRI GGCC 3 cut(s) 268, 503, 765
BsuTUI ATCGAT 2 cut(s) 186, 892
BtgI CCRYGG 2 cut(s) 15, 422
BtsCI GGATG 3 cut(s) 337, 727, 774
BtsI GCAGTG 1 cut(s) 1061
BtsIMutI CAGTG 5 cut(s) 86, 269, 580, 661, 1061
Cac8I GCNNGC 3 cut(s) 39, 519, 902
CaiI CAGNNNCTG 1 cut(s) 700
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 142, 266
ClaI ATCGAT 2 cut(s) 186, 892
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 199, 367, 857
CviAII CATG 9 cut(s) 16, 202, 388, 423, 505, 518, 634, 721, 905
CviQI GTAC 3 cut(s) 199, 367, 857
DdeI CTNAG 6 cut(s) 102, 207, 345, 745, 810, 1228
DpnI GATC 5 cut(s) 80, 185, 566, 842, 1060
DpnII GATC 5 cut(s) 78, 183, 564, 840, 1058
EaeI YGGCCR 2 cut(s) 501, 763
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 15, 422, 828
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 1226
Eco32I GATATC 2 cut(s) 652, 666
Eco47I GGWCC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 708
EcoO65I GGTNACC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 74
EcoRV GATATC 2 cut(s) 652, 666
EcoT14I CCWWGG 3 cut(s) 15, 422, 828
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 3 cut(s) 15, 422, 828
Esp3I CGTCTC 1 cut(s) 829
FaeI CATG 9 cut(s) 19, 205, 391, 426, 508, 521, 637, 724, 908
FaqI GGGAC 2 cut(s) 155, 206
FatI CATG 9 cut(s) 15, 201, 387, 422, 504, 517, 633, 720, 904
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 35, 56, 684, 876
FokI GGATG 3 cut(s) 324, 714, 761
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 35, 56, 684, 876
FspBI CTAG 1 cut(s) 936
GlaI GCGC 1 cut(s) 33
GluI GCNGC 4 cut(s) 35, 56, 684, 876
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 3 cut(s) 268, 503, 765
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 34
Hin1II CATG 9 cut(s) 19, 205, 391, 426, 508, 521, 637, 724, 908
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 384, 812
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 139, 533
Hpy166II GTNNAC 4 cut(s) 369, 859, 1155, 1279
Hpy188I TCNGA 5 cut(s) 52, 348, 482, 1014, 1264
Hpy188III TCNNGA 4 cut(s) 694, 747, 809, 936
Hpy8I GTNNAC 4 cut(s) 369, 859, 1155, 1279
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 815, 902, 1197
HpyCH4III ACNGT 2 cut(s) 90, 497
HpyCH4IV ACGT 2 cut(s) 168, 1275
HpyCH4V TGCA 7 cut(s) 463, 517, 683, 737, 875, 900, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
HpyF3I CTNAG 6 cut(s) 102, 207, 345, 745, 810, 1228
HpySE526I ACGT 2 cut(s) 168, 1275
Hsp92II CATG 9 cut(s) 19, 205, 391, 426, 508, 521, 637, 724, 908
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 5 cut(s) 78, 183, 564, 840, 1058
LmnI GCTCC 6 cut(s) 52, 483, 609, 619, 749, 1165
Lsp1109I GCAGC 2 cut(s) 695, 887
LweI GCATC 2 cut(s) 127, 562
MaeI CTAG 1 cut(s) 936
MaeII ACGT 2 cut(s) 168, 1275
MaeIII GTNAC 3 cut(s) 245, 319, 708
MalI GATC 5 cut(s) 80, 185, 566, 842, 1060
MbiI CCGCTC 1 cut(s) 55
MboI GATC 5 cut(s) 78, 183, 564, 840, 1058
MboII GAAGA 6 cut(s) 124, 193, 418, 530, 614, 1310
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 4 cut(s) 433, 480, 606, 1057
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
MluI ACGCGT 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 4 cut(s) 30, 505, 1009, 1215
MnlI CCTC 8 cut(s) 121, 127, 155, 541, 617, 630, 641, 905
Mox20I TGGCCA 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 503
MseI TTAA 5 cut(s) 489, 638, 756, 792, 996
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 2 cut(s) 463, 1044
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 2 cut(s) 34, 197
MwoI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
NcoI CCATGG 2 cut(s) 15, 422
NdeII GATC 5 cut(s) 78, 183, 564, 840, 1058
NlaIII CATG 9 cut(s) 19, 205, 391, 426, 508, 521, 637, 724, 908
NlaIV GGNNCC 4 cut(s) 59, 80, 420, 751
NspI RCATGY 2 cut(s) 205, 521
PaeI GCATGC 1 cut(s) 521
PciI ACATGT 1 cut(s) 201
PctI GAATGC 2 cut(s) 463, 1044
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 4 cut(s) 36, 57, 685, 877
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 1276
PscI ACATGT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 708
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 4 cut(s) 59, 80, 420, 751
PspPI GGNCC 2 cut(s) 142, 266
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 3 cut(s) 200, 368, 858
RsaNI GTAC 3 cut(s) 199, 367, 857
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 5 cut(s) 489, 638, 756, 792, 996
SatI GCNGC 4 cut(s) 35, 56, 684, 876
Sau3AI GATC 5 cut(s) 78, 183, 564, 840, 1058
Sau96I GGNCC 2 cut(s) 142, 266
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 4 cut(s) 433, 480, 606, 1057
SfaNI GCATC 2 cut(s) 127, 562
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
SphI GCATGC 1 cut(s) 521
Sse9I AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
SsiI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
SspI AATATT 2 cut(s) 819, 1149
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 3 cut(s) 15, 422, 828
TaaI ACNGT 2 cut(s) 90, 497
TaiI ACGT 2 cut(s) 171, 1278
TaqI TCGA 6 cut(s) 135, 186, 452, 587, 892, 1292
TasI AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
TatI WGTACW 2 cut(s) 366, 856
TauI GCSGC 2 cut(s) 37, 58
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 5 cut(s) 489, 638, 756, 792, 996
Tru9I TTAA 5 cut(s) 489, 638, 756, 792, 996
TscAI CASTG 5 cut(s) 93, 276, 580, 661, 1068
TseI GCWGC 2 cut(s) 683, 875
TspDTI ATGAA 7 cut(s) 326, 513, 611, 706, 763, 921, 1027
TspRI CASTG 5 cut(s) 93, 276, 580, 661, 1068
Van91I CCANNNNNTGG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 4 cut(s) 63, 923, 959, 1033
XbaI TCTAGA 1 cut(s) 935
XceI RCATGY 2 cut(s) 205, 521
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.