Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425979.1

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1300

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

cgcggcgggcgaaatcgtcgcagcggcaccaaatttccaagccctggatccccacactgttccaaaaccctaaggtagcctccgcctccgctttgctcgtcttcgatgcggtcctcaccgccctcatcattgcctacgtcccttatacgaagatcgattgggacgcgtacatgtctcaggtcaatgggtttcttggtggagaaagagactatagtaacttgaaaggagacacagggccactggtgtatcctgctggttttttatatgcttattctgctattcagtatgttacaggaggccaagttcatccagctcagattttgtttggggttctgtacactataaacttgggaatcatgttttacatctatgtgaagactgatgtggttccatggtgggctcttgcgttgctttgtctatcaaaaagagtgcattctatttttgtgctccgactttttaatgactgtttggccatgttgctactgcatgcttcattagcctcatttcttcaccaaaggtggcatcttggattgatcattttcagcggtgctgtttcgataaagatgaatgtgctcctctatgctccacctcttctactcctcatgttaaaggctatggatatcagtggagtgatatcagctttgtttggtgcagctcttgtccaggtgcttatcttgtcccttttgtttttaagagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

232

Amino Acids

25.82

Weight (kDa)

9.44

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccII	CGCG	2 cut(s)	3, 166
AciI	CCGC	8 cut(s)	3, 6, 24, 83, 89, 109, 119, 545
AclWI	GGATC	2 cut(s)	42, 55
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	2 cut(s)	169, 337
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	2 cut(s)	164, 170
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	43, 662
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	3 cut(s)	313, 640, 655
AluI	AGCT	3 cut(s)	313, 640, 655
Alw21I	GWGCWC	2 cut(s)	449, 575
Alw26I	GTCTC	4 cut(s)	179, 200, 221, 689
AlwI	GGATC	2 cut(s)	42, 55
AoxI	GGCC	3 cut(s)	235, 297, 470
ApeKI	GCWGC	2 cut(s)	21, 652
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	111, 235
AsuHPI	GGTGA	2 cut(s)	108, 502
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BalI	TGGCCA	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	93, 382
Bbv12I	GWGCWC	2 cut(s)	449, 575
BbvI	GCAGC	2 cut(s)	33, 664
BciT130I	CCWGG	2 cut(s)	45, 664
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	533
BcoDI	GTCTC	4 cut(s)	179, 200, 221, 689
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	4 cut(s)	4, 22, 25, 653
BlsI	GCNGC	4 cut(s)	5, 23, 26, 654
Bme1390I	CCNGG	2 cut(s)	45, 664
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	111, 235
BmiI	GGNNCC	3 cut(s)	28, 49, 389
BmrFI	CCNGG	2 cut(s)	45, 664
BmsI	GCATC	2 cut(s)	96, 531
BpiI	GAAGAC	2 cut(s)	93, 382
Bsa29I	ATCGAT	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	43, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	45, 664
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	43, 391
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	190, 328
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	565, 589
BseXI	GCAGC	2 cut(s)	33, 664
BsgI	GTGCAG	1 cut(s)	671
Bsh1236I	CGCG	2 cut(s)	3, 166
BshFI	GGCC	3 cut(s)	237, 299, 472
BshNI	GGYRCC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	449, 575
BslFI	GGGAC	3 cut(s)	124, 175, 663
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	4 cut(s)	179, 200, 221, 689
BsmFI	GGGAC	3 cut(s)	124, 175, 663
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	237, 299, 472
Bsp1286I	GDGCHC	3 cut(s)	402, 449, 575
Bsp1407I	TGTACA	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	47, 152, 533
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	8 cut(s)	3, 6, 24, 83, 89, 109, 119, 545
BspANI	GGCC	3 cut(s)	237, 299, 472
BspCNI	CTCAG	2 cut(s)	189, 327
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	2 cut(s)	3, 166
BspLI	GGNNCC	3 cut(s)	28, 49, 389
BspPI	GGATC	2 cut(s)	42, 55
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	43, 391
BssMI	GATC	3 cut(s)	47, 152, 533
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	45, 664
Bst4CI	ACNGT	2 cut(s)	59, 466
Bst6I	CTCTTC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	8, 488
BstDEI	CTNAG	3 cut(s)	71, 176, 314
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	306
BstFNI	CGCG	2 cut(s)	3, 166
BstKTI	GATC	3 cut(s)	50, 155, 536
BstMAI	GTCTC	4 cut(s)	179, 200, 221, 689
BstMBI	GATC	3 cut(s)	47, 152, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 496
BstNI	CCWGG	2 cut(s)	45, 664
BstNSI	RCATGY	2 cut(s)	174, 490
BstSCI	CCNGG	2 cut(s)	43, 662
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	3, 166
BstV1I	GCAGC	2 cut(s)	33, 664
BstV2I	GAAGAC	2 cut(s)	93, 382
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	237, 299, 472
BsuTUI	ATCGAT	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	55, 238, 630
Cac8I	GCNNGC	2 cut(s)	8, 488
Cfr13I	GGNCC	2 cut(s)	111, 235
ClaI	ATCGAT	1 cut(s)	155
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	168, 336
CviAII	CATG	6 cut(s)	171, 357, 392, 474, 487, 603
CviQI	GTAC	2 cut(s)	168, 336
DdeI	CTNAG	3 cut(s)	71, 176, 314
DpnI	GATC	3 cut(s)	49, 154, 535
DpnII	GATC	3 cut(s)	47, 152, 533
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	402
Eco32I	GATATC	2 cut(s)	621, 635
Eco47I	GGWCC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	43, 662
EcoRV	GATATC	2 cut(s)	621, 635
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	6 cut(s)	174, 360, 395, 477, 490, 606
FaqI	GGGAC	3 cut(s)	124, 175, 663
FatI	CATG	6 cut(s)	170, 356, 391, 473, 486, 602
FbaI	TGATCA	1 cut(s)	533
Fnu4HI	GCNGC	4 cut(s)	4, 22, 25, 653
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	4 cut(s)	4, 22, 25, 653
GluI	GCNGC	4 cut(s)	4, 22, 25, 653
HaeIII	GGCC	3 cut(s)	237, 299, 472
HgaI	GACGC	1 cut(s)	172
Hin1II	CATG	6 cut(s)	174, 360, 395, 477, 490, 606
HinfI	GANTC	1 cut(s)	353
HphI	GGTGA	2 cut(s)	108, 502
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	317, 451
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	59, 466
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	432, 486, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 496
HpyF3I	CTNAG	3 cut(s)	71, 176, 314
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	6 cut(s)	174, 360, 395, 477, 490, 606
Ksp22I	TGATCA	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	47, 152, 533
LmnI	GCTCC	3 cut(s)	452, 578, 588
Lsp1109I	GCAGC	2 cut(s)	33, 664
LweI	GCATC	2 cut(s)	96, 531
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	214, 288
MalI	GATC	3 cut(s)	49, 154, 535
MboI	GATC	3 cut(s)	47, 152, 533
MboII	GAAGA	5 cut(s)	93, 162, 387, 499, 583
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	402, 449, 575
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	1 cut(s)	32
MluI	ACGCGT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	9 cut(s)	90, 96, 124, 133, 289, 510, 586, 599, 610
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	3 cut(s)	458, 607, 691
MslI	CAYNNNNRTG	1 cut(s)	370
Msp20I	TGGCCA	1 cut(s)	472
MspA1I	CMGCKG	2 cut(s)	24, 545
MspR9I	CCNGG	2 cut(s)	45, 664
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	45, 664
MvnI	CGCG	2 cut(s)	3, 166
MwoI	GCNNNNNNNGC	2 cut(s)	274, 496
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	47, 152, 533
NlaIII	CATG	6 cut(s)	174, 360, 395, 477, 490, 606
NlaIV	GGNNCC	3 cut(s)	28, 49, 389
NspI	RCATGY	2 cut(s)	174, 490
PaeI	GCATGC	1 cut(s)	490
PciI	ACATGT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	5, 23, 26, 654
PscI	ACATGT	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	43, 662
PspGI	CCWGG	2 cut(s)	43, 662
PspN4I	GGNNCC	3 cut(s)	28, 49, 389
PspPI	GGNCC	2 cut(s)	111, 235
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	169, 337
RsaNI	GTAC	2 cut(s)	168, 336
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	458, 607, 691
SatI	GCNGC	4 cut(s)	4, 22, 25, 653
Sau3AI	GATC	3 cut(s)	47, 152, 533
Sau96I	GGNCC	2 cut(s)	111, 235
ScrFI	CCNGG	2 cut(s)	45, 664
SduI	GDGCHC	3 cut(s)	402, 449, 575
SetI	ASST	9 cut(s)	77, 140, 182, 315, 520, 591, 642, 657, 668
SfaNI	GCATC	2 cut(s)	96, 531
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	370
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	8 cut(s)	3, 6, 24, 83, 89, 109, 119, 545
StyD4I	CCNGG	2 cut(s)	43, 662
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	59, 466
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	104, 155, 556
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	2 cut(s)	6, 27
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	458, 607, 691
Tru9I	TTAA	3 cut(s)	458, 607, 691
TscAI	CASTG	3 cut(s)	62, 245, 630
TseI	GCWGC	2 cut(s)	21, 652
TspDTI	ATGAA	3 cut(s)	295, 482, 580
TspRI	CASTG	3 cut(s)	62, 245, 630
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	174, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.